Wall clock time and date at job start Mon Mar 30 2020 07:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38256 * 119.99618 * 2 1 4 4 C 1.38210 * 119.99862 * 179.79277 * 3 2 1 5 5 C 1.38259 * 119.99992 * 0.45863 * 4 3 2 6 6 C 1.50705 * 119.99836 * 179.79198 * 5 4 3 7 7 N 1.46900 * 109.47143 * 269.72305 * 6 5 4 8 8 C 1.48562 * 111.00083 * 290.12957 * 7 6 5 9 9 C 1.54380 * 104.59155 * 200.95456 * 8 7 6 10 10 C 1.54257 * 105.05946 * 23.85811 * 9 8 7 11 11 H 1.09006 * 110.31957 * 240.99747 * 10 9 8 12 12 C 1.50703 * 110.32584 * 118.89300 * 10 9 8 13 13 H 1.07994 * 119.99603 * 242.82416 * 12 10 9 14 14 C 1.37875 * 119.99838 * 62.82560 * 12 10 9 15 15 N 1.31513 * 120.00380 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99848 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47261 * 239.99776 * 16 14 12 19 19 H 1.48500 * 109.47454 * 119.99769 * 16 14 12 20 20 C 1.48715 * 111.01673 * 174.61743 * 7 6 5 21 21 C 1.38212 * 120.00028 * 359.51531 * 5 4 3 22 22 C 1.38208 * 120.00256 * 180.02562 * 2 1 3 23 23 C 1.50697 * 120.00126 * 359.97438 * 22 2 1 24 24 H 1.08997 * 109.47154 * 269.97531 * 1 2 3 25 25 H 1.08993 * 109.47593 * 29.98386 * 1 2 3 26 26 H 1.09000 * 109.46876 * 149.98121 * 1 2 3 27 27 H 1.08003 * 120.00290 * 359.97438 * 3 2 1 28 28 H 1.08003 * 120.00395 * 180.25549 * 4 3 2 29 29 H 1.09003 * 109.46820 * 149.72854 * 6 5 4 30 30 H 1.08994 * 109.47226 * 29.73004 * 6 5 4 31 31 H 1.09006 * 110.40904 * 82.18150 * 8 7 6 32 32 H 1.08996 * 110.41333 * 319.73816 * 8 7 6 33 33 H 1.08992 * 110.32593 * 264.95139 * 9 8 7 34 34 H 1.09001 * 110.31855 * 142.74743 * 9 8 7 35 35 H 0.97001 * 119.99667 * 0.02562 * 15 14 12 36 36 H 1.09003 * 110.38970 * 40.24586 * 20 7 6 37 37 H 1.09002 * 110.51277 * 277.75657 * 20 7 6 38 38 H 1.07994 * 119.99802 * 180.25264 * 21 5 4 39 39 H 1.08996 * 109.47416 * 270.02438 * 23 22 2 40 40 H 1.08996 * 109.46956 * 30.02342 * 23 22 2 41 41 H 1.09006 * 109.47080 * 150.02400 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0043 5 6 4.2717 0.0001 -0.0009 6 6 5.7787 0.0003 -0.0009 7 7 6.2684 -0.0003 -1.3859 8 6 5.9959 -1.3028 -2.0464 9 6 6.9940 -1.3586 -3.2229 10 6 8.1465 -0.4176 -2.8158 11 1 8.2399 0.3985 -3.5323 12 6 9.4409 -1.1840 -2.7251 13 1 9.9574 -1.2615 -1.7798 14 6 9.9656 -1.7862 -3.8489 15 7 9.3364 -1.6922 -4.9999 16 14 11.5697 -2.7368 -3.7364 17 1 12.0739 -2.6935 -2.3402 18 1 12.5730 -2.1241 -4.6437 19 1 11.3378 -4.1482 -4.1358 20 6 7.7492 0.1300 -1.4282 21 6 3.5807 -1.1969 -0.0004 22 6 2.1981 -1.1969 -0.0005 23 6 1.4447 -2.5020 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3634 0.8900 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6582 2.1327 -0.0004 28 1 4.1203 2.1328 0.0085 29 1 6.1421 -0.8895 0.5132 30 1 6.1420 0.8904 0.5126 31 1 4.9708 -1.3348 -2.4157 32 1 6.1775 -2.1253 -1.3545 33 1 6.5205 -1.0035 -4.1382 34 1 7.3645 -2.3749 -3.3571 35 1 8.5032 -1.1989 -5.0582 36 1 8.2057 -0.4673 -0.6388 37 1 8.0435 1.1753 -1.3334 38 1 4.1208 -2.1321 -0.0004 39 1 1.2631 -2.8167 1.0271 40 1 0.4923 -2.3717 -0.5143 41 1 2.0339 -3.2617 -0.5144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259651985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:11 Heat of formation + Delta-G solvation = -8.711683 kcal Electronic energy + Delta-G solvation = -19108.295986 eV Core-core repulsion = 16372.126642 eV Total energy + Delta-G solvation = -2736.169343 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.82872 -39.58481 -35.99417 -34.45314 -33.11537 -31.78693 -30.04932 -28.74700 -27.79856 -26.13535 -25.00662 -22.97196 -22.14303 -21.59751 -20.73768 -18.90067 -17.14757 -16.74247 -16.63632 -16.21005 -15.87739 -15.65575 -15.07037 -15.03977 -14.79836 -14.06359 -13.87669 -13.69461 -13.58101 -13.54012 -13.27419 -12.94739 -12.77164 -12.60440 -12.53707 -12.24443 -12.21808 -11.94353 -11.88411 -11.74501 -11.68418 -11.37204 -10.58409 -10.46714 -9.68433 -9.50981 -9.26849 -8.60545 -6.33615 0.40984 0.49970 1.52469 1.61407 1.77424 2.55979 2.71909 3.19427 3.27362 3.74679 3.85974 3.92664 4.00860 4.08130 4.16968 4.27582 4.31751 4.39473 4.44388 4.56042 4.62581 4.68202 4.72671 4.74913 4.84529 4.86748 4.89009 5.01287 5.03622 5.05344 5.09758 5.26815 5.32811 5.39456 5.53720 5.58595 5.66858 5.75313 5.79012 6.07172 6.14120 6.17431 6.22272 6.64811 7.47610 8.78667 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.038634 B = 0.004076 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.580296 B = 6867.973670 C = 7129.440052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.124 4.124 4 C -0.115 4.115 5 C -0.087 4.087 6 C 0.084 3.916 7 N -0.512 5.512 8 C 0.056 3.944 9 C -0.105 4.105 10 C 0.022 3.978 11 H -0.005 1.005 12 C -0.607 4.607 13 H 0.046 0.954 14 C -0.030 4.030 15 N -0.936 5.936 16 Si 1.119 2.881 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.059 3.941 21 C -0.124 4.124 22 C -0.099 4.099 23 C -0.114 4.114 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.141 0.859 28 H 0.126 0.874 29 H 0.039 0.961 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.040 0.960 35 H 0.262 0.738 36 H 0.034 0.966 37 H 0.071 0.929 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.147 1.817 12.472 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.142 4.142 4 C -0.134 4.134 5 C -0.087 4.087 6 C -0.044 4.044 7 N -0.235 5.235 8 C -0.072 4.072 9 C -0.144 4.144 10 C 0.003 3.997 11 H 0.013 0.987 12 C -0.645 4.645 13 H 0.064 0.936 14 C -0.229 4.229 15 N -0.573 5.573 16 Si 0.941 3.059 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.069 4.069 21 C -0.142 4.142 22 C -0.099 4.099 23 C -0.171 4.171 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.159 0.841 28 H 0.144 0.856 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.132 0.868 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.339 1.393 11.342 19.939 hybrid contribution -0.273 0.360 0.949 1.051 sum -16.613 1.753 12.291 20.739 Atomic orbital electron populations 1.20884 0.89239 1.03646 1.03148 1.20118 0.97528 0.92295 0.99958 1.21271 0.93740 0.98520 1.00655 1.21140 0.94755 0.97490 1.00003 1.19717 0.94379 0.93964 1.00638 1.21208 0.91940 1.01655 0.89562 1.65440 1.11670 1.31060 1.15374 1.22904 0.98703 0.90150 0.95452 1.22299 0.96093 0.99591 0.96379 1.19534 0.93869 0.93578 0.92753 0.98711 1.22392 1.08292 1.36434 0.97428 0.93605 1.27209 1.06145 0.97555 0.91975 1.70824 1.18268 1.41253 1.26940 0.82906 0.71561 0.75343 0.76105 1.19764 1.20581 1.20584 1.22981 0.86799 0.99745 0.97368 1.21033 0.94345 0.97336 1.01528 1.20028 0.93190 0.96390 1.00272 1.20884 1.00300 0.92810 1.03070 0.90100 0.90814 0.90401 0.84118 0.85631 0.94278 0.89304 0.90649 0.94449 0.94664 0.94087 0.92787 0.94736 0.91066 0.86832 0.90135 0.89771 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.60 71.24 0.68 -0.91 16 2 C -0.10 -2.10 5.88 -19.87 -0.12 -2.22 16 3 C -0.12 -2.77 9.70 22.27 0.22 -2.56 16 4 C -0.12 -3.02 9.70 22.27 0.22 -2.80 16 5 C -0.09 -2.51 5.10 -19.86 -0.10 -2.61 16 6 C 0.08 2.65 4.97 85.56 0.43 3.08 16 7 N -0.51 -19.75 5.36 -885.60 -4.75 -24.49 16 8 C 0.06 2.24 5.48 86.45 0.47 2.72 16 9 C -0.10 -5.13 5.09 31.49 0.16 -4.97 16 10 C 0.02 1.14 2.62 -10.65 -0.03 1.11 16 11 H -0.01 -0.30 8.00 -2.38 -0.02 -0.32 16 12 C -0.61 -34.60 8.35 25.60 0.21 -34.39 16 13 H 0.05 2.58 7.57 -2.91 -0.02 2.56 16 14 C -0.03 -1.74 5.11 84.65 0.43 -1.31 16 15 N -0.94 -57.53 13.33 21.45 0.29 -57.24 16 16 Si 1.12 50.73 29.90 68.60 2.05 52.78 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 20 C 0.06 2.54 6.03 86.42 0.52 3.07 16 21 C -0.12 -3.39 8.39 22.27 0.19 -3.20 16 22 C -0.10 -2.30 5.88 -19.87 -0.12 -2.42 16 23 C -0.11 -1.97 9.60 71.24 0.68 -1.29 16 24 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 26 H 0.08 0.96 5.95 -2.39 -0.01 0.95 16 27 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 28 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 29 H 0.04 1.24 7.82 -2.39 -0.02 1.22 16 30 H 0.09 2.56 8.07 -2.39 -0.02 2.54 16 31 H 0.08 2.85 7.81 -2.38 -0.02 2.83 16 32 H 0.04 1.46 7.82 -2.39 -0.02 1.44 16 33 H 0.03 1.73 7.95 -2.39 -0.02 1.71 16 34 H 0.04 2.18 7.33 -2.39 -0.02 2.17 16 35 H 0.26 16.27 6.07 -92.71 -0.56 15.71 16 36 H 0.03 1.51 7.55 -2.39 -0.02 1.49 16 37 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.11 3.08 8.06 -2.91 -0.02 3.06 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.17 5.95 -2.39 -0.01 1.16 16 41 H 0.06 1.11 8.09 -2.38 -0.02 1.09 16 Total: -1.00 -65.36 324.08 2.63 -62.72 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 1.19 Total: 14.93 kcal Atomic # 6 Polarization: -52.55 SS G_CDS: 3.85 Total: -48.69 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -4.46 Total: -81.74 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 2.05 Total: 52.78 kcal Total: -65.36 2.63 -62.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259651985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.011 kcal (2) G-P(sol) polarization free energy of solvation -65.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds