Wall clock time and date at job start Mon Mar 30 2020 07:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00093 * 2 1 4 4 H 1.48505 * 109.46650 * 239.99589 * 3 2 1 5 5 H 1.48501 * 109.46828 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47381 * 119.99527 * 3 2 1 7 7 C 1.37878 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99644 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00061 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.64990 * 298.30464 * 9 7 2 11 11 C 1.54599 * 110.72089 * 61.45862 * 9 7 2 12 12 C 1.53993 * 105.13745 * 140.49353 * 11 9 7 13 13 N 1.47900 * 107.06193 * 1.22245 * 12 11 9 14 14 C 1.46897 * 110.99752 * 214.15613 * 13 12 11 15 15 C 1.53005 * 109.46745 * 175.70996 * 14 13 12 16 16 C 1.53005 * 109.47032 * 174.86099 * 15 14 13 17 17 C 1.50699 * 109.47225 * 180.02562 * 16 15 14 18 18 C 1.38239 * 119.99382 * 269.72646 * 17 16 15 19 19 C 1.38235 * 119.99211 * 179.78940 * 18 17 16 20 20 C 1.38231 * 120.00314 * 0.43457 * 19 18 17 21 21 C 1.38235 * 119.99982 * 359.81632 * 20 19 18 22 22 C 1.38227 * 120.00001 * 359.97438 * 21 20 19 23 23 C 1.48531 * 105.81862 * 334.67068 * 13 12 11 24 24 H 0.97000 * 120.00291 * 0.02562 * 1 2 3 25 25 H 1.08995 * 110.31340 * 21.57205 * 11 9 7 26 26 H 1.09001 * 110.38659 * 259.44674 * 11 9 7 27 27 H 1.09004 * 109.91536 * 241.86357 * 12 11 9 28 28 H 1.09004 * 110.07911 * 120.67118 * 12 11 9 29 29 H 1.09002 * 109.47036 * 55.71180 * 14 13 12 30 30 H 1.08999 * 109.47424 * 295.70685 * 14 13 12 31 31 H 1.08996 * 109.47408 * 54.85999 * 15 14 13 32 32 H 1.09004 * 109.47095 * 294.85650 * 15 14 13 33 33 H 1.09004 * 109.46813 * 299.99723 * 16 15 14 34 34 H 1.08996 * 109.47106 * 59.99714 * 16 15 14 35 35 H 1.07992 * 120.00247 * 359.97438 * 18 17 16 36 36 H 1.08000 * 119.99913 * 180.27738 * 19 18 17 37 37 H 1.08004 * 120.00277 * 179.83635 * 20 19 18 38 38 H 1.08002 * 120.00030 * 179.97438 * 21 20 19 39 39 H 1.08004 * 120.00375 * 179.97438 * 22 21 20 40 40 H 1.08997 * 110.66764 * 157.64289 * 23 13 12 41 41 H 1.09002 * 110.66948 * 280.77256 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6396 -2.5900 0.8983 11 6 0.3797 -2.6277 -1.2700 12 6 0.5041 -4.1025 -1.6954 13 7 1.3715 -4.7695 -0.7003 14 6 2.1911 -5.8124 -1.3315 15 6 3.1488 -6.4048 -0.2957 16 6 3.9118 -7.5761 -0.9177 17 6 4.8546 -8.1600 0.1026 18 6 6.1470 -7.6799 0.2038 19 6 7.0105 -8.2126 1.1427 20 6 6.5845 -9.2313 1.9742 21 6 5.2938 -9.7149 1.8695 22 6 4.4289 -9.1794 0.9336 23 6 2.2240 -3.6985 -0.1239 24 1 -0.4850 0.8400 -0.0004 25 1 0.7579 -1.9740 -2.0559 26 1 -0.6588 -2.3854 -1.0444 27 1 0.9567 -4.1666 -2.6850 28 1 -0.4791 -4.5731 -1.7059 29 1 2.7648 -5.3778 -2.1502 30 1 1.5434 -6.5988 -1.7190 31 1 2.5805 -6.7574 0.5649 32 1 3.8561 -5.6397 0.0246 33 1 3.2045 -8.3412 -1.2380 34 1 4.4801 -7.2235 -1.7783 35 1 6.4811 -6.8868 -0.4486 36 1 8.0189 -7.8345 1.2248 37 1 7.2600 -9.6492 2.7060 38 1 4.9611 -10.5111 2.5189 39 1 3.4205 -9.5574 0.8515 40 1 2.6002 -3.9919 0.8561 41 1 3.0471 -3.4579 -0.7968 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260038585.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:15 Heat of formation + Delta-G solvation = 7.874255 kcal Electronic energy + Delta-G solvation = -18587.368237 eV Core-core repulsion = 15851.918113 eV Total energy + Delta-G solvation = -2735.450123 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.40311 -38.10644 -34.83016 -32.95156 -31.12548 -30.96750 -28.94718 -27.97776 -25.37120 -24.17913 -22.65152 -21.76513 -20.80273 -19.87124 -19.24951 -16.88427 -16.30635 -15.61384 -15.31780 -15.02459 -14.68071 -14.15937 -14.14348 -13.54014 -13.45482 -13.03073 -12.93103 -12.31879 -12.18267 -12.09566 -11.52552 -11.36429 -11.24356 -11.05006 -11.02391 -10.69367 -10.62357 -10.43488 -10.35516 -10.10214 -9.60713 -9.17432 -9.00427 -8.75226 -8.72915 -8.37271 -7.69696 -5.99796 -4.03212 1.28168 1.31764 3.32584 3.37342 3.39706 3.69925 4.43349 4.60183 4.75177 4.81798 4.92382 5.03421 5.14624 5.33482 5.37200 5.43697 5.48961 5.54755 5.70012 5.79332 5.88417 5.93847 5.97037 6.01494 6.12483 6.24561 6.31064 6.38452 6.42141 6.47063 6.51085 6.60041 6.61850 6.90245 6.93293 7.18347 7.21437 7.62734 7.70248 7.79502 7.91654 8.06882 8.47444 8.99156 9.60777 11.09985 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.025965 B = 0.003754 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.120151 B = 7456.458543 C = 8176.501210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.052 3.948 10 H 0.035 0.965 11 C -0.102 4.102 12 C 0.034 3.966 13 N -0.523 5.523 14 C 0.049 3.951 15 C -0.109 4.109 16 C -0.081 4.081 17 C -0.074 4.074 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.130 4.130 21 C -0.120 4.120 22 C -0.118 4.118 23 C 0.042 3.958 24 H 0.260 0.740 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.026 0.974 28 H 0.060 0.940 29 H 0.027 0.973 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.062 0.938 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.179 -17.275 -0.613 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.033 3.967 10 H 0.053 0.947 11 C -0.140 4.140 12 C -0.094 4.094 13 N -0.247 5.247 14 C -0.080 4.080 15 C -0.147 4.147 16 C -0.119 4.119 17 C -0.074 4.074 18 C -0.136 4.136 19 C -0.137 4.137 20 C -0.148 4.148 21 C -0.138 4.138 22 C -0.136 4.136 23 C -0.085 4.085 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.080 0.920 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 8.697 -17.413 -0.223 19.466 hybrid contribution 0.968 1.310 -0.676 1.764 sum 9.666 -16.103 -0.899 18.803 Atomic orbital electron populations 1.69968 1.05867 1.26568 1.50187 1.24964 0.94836 0.98975 0.95067 0.86693 0.79625 0.83283 0.78590 1.20362 1.21308 1.20241 1.21063 0.92733 0.90463 1.51276 0.92737 1.19529 0.92132 0.90930 0.94129 0.94671 1.22306 1.01422 0.90509 0.99786 1.22961 0.96449 0.97228 0.92746 1.64777 1.19146 1.11360 1.29453 1.22230 0.94870 0.95542 0.95338 1.21567 0.97720 0.96510 0.98918 1.20629 0.96956 0.98010 0.96272 1.19967 0.94532 0.95721 0.97172 1.21103 0.93511 0.99954 0.99027 1.21142 0.99668 0.96918 0.95992 1.21115 0.96308 0.97713 0.99696 1.21132 0.94023 1.00097 0.98546 1.21078 0.99657 0.96868 0.95984 1.23351 0.95681 0.91831 0.97646 0.92999 0.92834 0.92123 0.95551 0.92132 0.95461 0.91713 0.91060 0.91642 0.91024 0.91162 0.86089 0.86239 0.86388 0.86265 0.86075 0.91988 0.94921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 12.44 55.43 0.69 -25.01 16 2 C 0.06 1.78 5.33 -17.82 -0.10 1.68 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.33 8.43 -34.44 -0.29 -14.62 16 8 H 0.05 1.49 7.78 -52.48 -0.41 1.08 16 9 C 0.05 1.33 2.98 -89.91 -0.27 1.06 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 11 C -0.10 -2.43 5.51 -25.37 -0.14 -2.57 16 12 C 0.03 0.68 6.70 -2.76 -0.02 0.66 16 13 N -0.52 -10.17 5.35 -230.45 -1.23 -11.40 16 14 C 0.05 0.76 4.84 -3.82 -0.02 0.74 16 15 C -0.11 -1.51 4.88 -26.73 -0.13 -1.64 16 16 C -0.08 -0.91 5.35 -27.88 -0.15 -1.05 16 17 C -0.07 -0.85 5.13 -104.62 -0.54 -1.39 16 18 C -0.12 -1.32 9.70 -39.58 -0.38 -1.71 16 19 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 20 C -0.13 -1.28 10.05 -39.58 -0.40 -1.67 16 21 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 22 C -0.12 -1.28 9.70 -39.59 -0.38 -1.66 16 23 C 0.04 0.91 4.78 -1.90 -0.01 0.90 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.05 1.35 7.84 -51.93 -0.41 0.94 16 26 H 0.06 1.53 8.05 -51.93 -0.42 1.11 16 27 H 0.03 0.49 7.67 -51.93 -0.40 0.09 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.03 0.43 7.97 -51.93 -0.41 0.02 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.98 7.18 -51.93 -0.37 0.61 16 33 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 34 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 40 H 0.06 1.30 7.77 -51.93 -0.40 0.90 16 41 H 0.03 0.71 7.92 -51.93 -0.41 0.30 16 LS Contribution 331.64 15.07 5.00 5.00 Total: -1.00 -29.17 331.64 -11.20 -40.36 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.01 Total: -0.80 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -3.62 Total: -24.50 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.54 Total: -36.41 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.17 -11.20 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260038585.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.237 kcal (2) G-P(sol) polarization free energy of solvation -29.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds