Wall clock time and date at job start Mon Mar 30 2020 07:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00093 * 2 1 4 4 H 1.48505 * 109.46650 * 239.99589 * 3 2 1 5 5 H 1.48501 * 109.46828 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47381 * 119.99527 * 3 2 1 7 7 C 1.37878 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99644 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00061 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.64990 * 298.30464 * 9 7 2 11 11 C 1.54599 * 110.72089 * 61.45862 * 9 7 2 12 12 C 1.53993 * 105.13745 * 140.49353 * 11 9 7 13 13 N 1.47900 * 107.06193 * 1.22245 * 12 11 9 14 14 C 1.46897 * 110.99752 * 214.15613 * 13 12 11 15 15 C 1.53005 * 109.46745 * 175.70996 * 14 13 12 16 16 C 1.53005 * 109.47032 * 174.86099 * 15 14 13 17 17 C 1.50699 * 109.47225 * 180.02562 * 16 15 14 18 18 C 1.38239 * 119.99382 * 269.72646 * 17 16 15 19 19 C 1.38235 * 119.99211 * 179.78940 * 18 17 16 20 20 C 1.38231 * 120.00314 * 0.43457 * 19 18 17 21 21 C 1.38235 * 119.99982 * 359.81632 * 20 19 18 22 22 C 1.38227 * 120.00001 * 359.97438 * 21 20 19 23 23 C 1.48531 * 105.81862 * 334.67068 * 13 12 11 24 24 H 0.97000 * 120.00291 * 0.02562 * 1 2 3 25 25 H 1.08995 * 110.31340 * 21.57205 * 11 9 7 26 26 H 1.09001 * 110.38659 * 259.44674 * 11 9 7 27 27 H 1.09004 * 109.91536 * 241.86357 * 12 11 9 28 28 H 1.09004 * 110.07911 * 120.67118 * 12 11 9 29 29 H 1.09002 * 109.47036 * 55.71180 * 14 13 12 30 30 H 1.08999 * 109.47424 * 295.70685 * 14 13 12 31 31 H 1.08996 * 109.47408 * 54.85999 * 15 14 13 32 32 H 1.09004 * 109.47095 * 294.85650 * 15 14 13 33 33 H 1.09004 * 109.46813 * 299.99723 * 16 15 14 34 34 H 1.08996 * 109.47106 * 59.99714 * 16 15 14 35 35 H 1.07992 * 120.00247 * 359.97438 * 18 17 16 36 36 H 1.08000 * 119.99913 * 180.27738 * 19 18 17 37 37 H 1.08004 * 120.00277 * 179.83635 * 20 19 18 38 38 H 1.08002 * 120.00030 * 179.97438 * 21 20 19 39 39 H 1.08004 * 120.00375 * 179.97438 * 22 21 20 40 40 H 1.08997 * 110.66764 * 157.64289 * 23 13 12 41 41 H 1.09002 * 110.66948 * 280.77256 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6396 -2.5900 0.8983 11 6 0.3797 -2.6277 -1.2700 12 6 0.5041 -4.1025 -1.6954 13 7 1.3715 -4.7695 -0.7003 14 6 2.1911 -5.8124 -1.3315 15 6 3.1488 -6.4048 -0.2957 16 6 3.9118 -7.5761 -0.9177 17 6 4.8546 -8.1600 0.1026 18 6 6.1470 -7.6799 0.2038 19 6 7.0105 -8.2126 1.1427 20 6 6.5845 -9.2313 1.9742 21 6 5.2938 -9.7149 1.8695 22 6 4.4289 -9.1794 0.9336 23 6 2.2240 -3.6985 -0.1239 24 1 -0.4850 0.8400 -0.0004 25 1 0.7579 -1.9740 -2.0559 26 1 -0.6588 -2.3854 -1.0444 27 1 0.9567 -4.1666 -2.6850 28 1 -0.4791 -4.5731 -1.7059 29 1 2.7648 -5.3778 -2.1502 30 1 1.5434 -6.5988 -1.7190 31 1 2.5805 -6.7574 0.5649 32 1 3.8561 -5.6397 0.0246 33 1 3.2045 -8.3412 -1.2380 34 1 4.4801 -7.2235 -1.7783 35 1 6.4811 -6.8868 -0.4486 36 1 8.0189 -7.8345 1.2248 37 1 7.2600 -9.6492 2.7060 38 1 4.9611 -10.5111 2.5189 39 1 3.4205 -9.5574 0.8515 40 1 2.6002 -3.9919 0.8561 41 1 3.0471 -3.4579 -0.7968 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260038585.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:15 Heat of formation + Delta-G solvation = -7.147968 kcal Electronic energy + Delta-G solvation = -18588.019649 eV Core-core repulsion = 15851.918113 eV Total energy + Delta-G solvation = -2736.101536 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.25376 -39.67592 -36.10397 -34.71776 -32.57442 -31.72434 -30.48108 -29.56723 -26.97035 -25.72264 -23.41703 -23.05543 -21.82340 -21.50520 -20.99401 -18.41507 -17.61240 -16.83795 -16.71921 -16.27527 -16.16174 -15.65154 -15.39829 -14.79075 -14.34904 -14.22869 -14.09717 -13.81231 -13.68395 -13.48932 -13.02122 -12.87430 -12.68082 -12.56444 -12.34259 -12.26016 -12.05620 -11.83119 -11.61394 -11.49190 -11.44800 -11.11189 -10.82657 -10.50775 -9.78043 -9.54417 -9.25610 -8.14056 -6.25110 0.49383 0.54107 1.41066 1.42659 1.50411 2.42035 2.89800 3.16092 3.24776 3.81407 3.95847 4.09931 4.18132 4.20252 4.24839 4.33803 4.42650 4.49721 4.53969 4.58834 4.64600 4.68600 4.76449 4.84451 4.85439 4.92256 5.04378 5.15357 5.21417 5.25506 5.26302 5.33786 5.39610 5.60107 5.62150 5.66341 5.79093 5.80472 5.86375 6.02734 6.17772 6.31839 6.40339 6.84768 7.42792 8.95258 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.025965 B = 0.003754 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.120151 B = 7456.458543 C = 8176.501210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.040 3.960 10 H -0.001 1.001 11 C -0.093 4.093 12 C 0.043 3.957 13 N -0.529 5.529 14 C 0.049 3.951 15 C -0.100 4.100 16 C -0.071 4.071 17 C -0.091 4.091 18 C -0.135 4.135 19 C -0.130 4.130 20 C -0.136 4.136 21 C -0.128 4.128 22 C -0.130 4.130 23 C 0.059 3.941 24 H 0.261 0.739 25 H 0.033 0.967 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.030 0.970 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.132 0.868 40 H 0.063 0.937 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.384 -18.493 -0.966 21.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.575 4.575 8 H 0.072 0.928 9 C 0.021 3.979 10 H 0.018 0.982 11 C -0.132 4.132 12 C -0.085 4.085 13 N -0.254 5.254 14 C -0.079 4.079 15 C -0.138 4.138 16 C -0.109 4.109 17 C -0.091 4.091 18 C -0.153 4.153 19 C -0.147 4.147 20 C -0.154 4.154 21 C -0.145 4.145 22 C -0.148 4.148 23 C -0.068 4.068 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.049 0.951 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.150 0.850 40 H 0.082 0.918 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 9.913 -18.648 -0.580 21.127 hybrid contribution 0.593 1.645 -0.522 1.825 sum 10.505 -17.003 -1.102 20.017 Atomic orbital electron populations 1.70099 1.07313 1.27400 1.50861 1.25778 0.95685 1.02509 0.94608 0.85641 0.78400 0.78879 0.78926 1.19518 1.20899 1.19535 1.21414 0.92955 0.91795 1.51363 0.92767 1.19503 0.92883 0.92170 0.93305 0.98232 1.22089 0.99419 0.93289 0.98427 1.22854 0.97806 0.94304 0.93507 1.64769 1.19446 1.11070 1.30078 1.22355 0.95160 0.94754 0.95645 1.21452 0.97059 0.96982 0.98310 1.20531 0.96984 0.97180 0.96191 1.20078 0.94808 0.96428 0.97781 1.21306 0.93890 1.00433 0.99696 1.21435 1.00438 0.97073 0.95798 1.21461 0.96724 0.97377 0.99830 1.21460 0.94075 1.00479 0.98533 1.21320 1.00447 0.96914 0.96149 1.23053 0.94761 0.91001 0.98028 0.92984 0.94808 0.94396 0.93749 0.90433 0.95131 0.89479 0.91908 0.93292 0.89606 0.90559 0.85768 0.84601 0.84212 0.84227 0.85039 0.91810 0.95123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.34 12.44 21.45 0.27 -54.07 16 2 C 0.01 0.76 5.33 84.66 0.45 1.21 16 3 Si 0.96 44.06 29.54 68.60 2.03 46.08 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.54 -30.32 8.43 25.60 0.22 -30.11 16 8 H 0.05 2.98 7.78 -2.91 -0.02 2.96 16 9 C 0.04 2.13 2.98 -10.33 -0.03 2.10 16 10 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 11 C -0.09 -4.57 5.51 31.47 0.17 -4.39 16 12 C 0.04 1.66 6.70 86.45 0.58 2.24 16 13 N -0.53 -19.96 5.35 -883.00 -4.73 -24.68 16 14 C 0.05 1.41 4.84 86.31 0.42 1.83 16 15 C -0.10 -2.63 4.88 30.60 0.15 -2.48 16 16 C -0.07 -1.46 5.35 29.85 0.16 -1.30 16 17 C -0.09 -1.97 5.13 -19.87 -0.10 -2.08 16 18 C -0.14 -2.90 9.70 22.27 0.22 -2.68 16 19 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 20 C -0.14 -2.40 10.05 22.27 0.22 -2.18 16 21 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 22 C -0.13 -2.62 9.70 22.27 0.22 -2.40 16 23 C 0.06 2.56 4.78 86.65 0.41 2.97 16 24 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 25 H 0.03 1.73 7.84 -2.39 -0.02 1.71 16 26 H 0.04 1.97 8.05 -2.39 -0.02 1.95 16 27 H 0.04 1.56 7.67 -2.39 -0.02 1.54 16 28 H 0.08 2.75 8.14 -2.38 -0.02 2.73 16 29 H 0.03 0.89 7.97 -2.39 -0.02 0.87 16 30 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.05 1.43 7.18 -2.39 -0.02 1.42 16 33 H 0.09 1.51 8.09 -2.39 -0.02 1.49 16 34 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 35 H 0.12 2.45 8.06 -2.91 -0.02 2.42 16 36 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 38 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 39 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.06 2.70 7.77 -2.39 -0.02 2.68 16 41 H 0.03 1.33 7.92 -2.39 -0.02 1.31 16 Total: -1.00 -63.03 331.64 2.06 -60.97 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.96 Total: 13.31 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 3.53 Total: -41.60 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -4.46 Total: -78.76 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -63.03 2.06 -60.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260038585.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.818 kcal (2) G-P(sol) polarization free energy of solvation -63.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds