Wall clock time and date at job start Mon Mar 30 2020 07:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00216 * 2 1 4 4 H 1.48503 * 109.47524 * 270.00073 * 3 2 1 5 5 H 1.48500 * 109.47223 * 30.00081 * 3 2 1 6 6 H 1.48504 * 109.47240 * 150.00213 * 3 2 1 7 7 C 1.37876 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00320 * 359.97438 * 7 2 1 9 9 C 1.50710 * 120.00056 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.71599 * 55.08859 * 9 7 2 11 11 C 1.53979 * 109.69304 * 294.52596 * 9 7 2 12 12 C 1.45875 * 112.66214 * 158.90229 * 11 9 7 13 13 C 1.54520 * 111.67526 * 61.49533 * 12 11 9 14 14 C 1.50536 * 108.85750 * 282.75362 * 13 12 11 15 15 C 1.53913 * 112.85179 * 91.81203 * 14 13 12 16 16 N 1.44301 * 109.69258 * 175.65928 * 9 7 2 17 17 C 1.46903 * 110.99876 * 341.05109 * 16 9 7 18 18 C 1.50701 * 109.46919 * 179.28204 * 17 16 9 19 19 C 1.38237 * 120.00100 * 269.73049 * 18 17 16 20 20 C 1.38235 * 120.00206 * 179.81021 * 19 18 17 21 21 C 1.38244 * 119.99536 * 0.41546 * 20 19 18 22 22 C 1.38230 * 120.00069 * 359.81555 * 21 20 19 23 23 C 1.38231 * 119.99987 * 90.00003 * 18 17 16 24 24 H 0.97000 * 119.99878 * 0.02562 * 1 2 3 25 25 H 1.09007 * 108.84658 * 38.08220 * 11 9 7 26 26 H 1.09007 * 108.84568 * 279.72603 * 11 9 7 27 27 H 1.09005 * 109.03994 * 300.93636 * 12 11 9 28 28 H 1.08995 * 109.04374 * 182.06518 * 12 11 9 29 29 H 1.09001 * 109.57342 * 162.93492 * 13 12 11 30 30 H 1.09000 * 109.57142 * 42.56621 * 13 12 11 31 31 H 1.09001 * 108.78356 * 212.64571 * 14 13 12 32 32 H 1.08994 * 108.78871 * 330.97248 * 14 13 12 33 33 H 1.09008 * 108.71420 * 78.69479 * 15 14 13 34 34 H 1.08999 * 108.71468 * 196.70031 * 15 14 13 35 35 H 1.08994 * 109.47285 * 299.28243 * 17 16 9 36 36 H 1.08997 * 109.47015 * 59.28600 * 17 16 9 37 37 H 1.08003 * 119.99978 * 359.97438 * 19 18 17 38 38 H 1.07996 * 120.00561 * 180.20882 * 20 19 18 39 39 H 1.08001 * 119.99594 * 179.78653 * 21 20 19 40 40 H 1.08000 * 120.00126 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.00308 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 1 3.8796 -0.6071 0.8403 11 6 4.0300 -0.5921 -1.3201 12 6 5.4019 -0.1073 -1.2158 13 6 6.3851 -1.2475 -0.8683 14 6 6.2654 -1.5630 0.5988 15 6 5.2426 -2.6758 0.8893 16 7 3.9978 -2.5489 0.1012 17 6 2.9541 -3.4453 0.6161 18 6 3.4920 -4.8510 0.6923 19 6 3.3578 -5.7020 -0.3888 20 6 3.8547 -6.9901 -0.3204 21 6 4.4782 -7.4300 0.8324 22 6 4.6081 -6.5806 1.9152 23 6 4.1146 -5.2912 1.8453 24 1 -0.4850 0.8401 -0.0004 25 1 3.3840 0.2381 -1.6061 26 1 3.9842 -1.3550 -2.0974 27 1 5.4516 0.6545 -0.4378 28 1 5.6951 0.3376 -2.1666 29 1 7.4042 -0.9318 -1.0920 30 1 6.1386 -2.1334 -1.4536 31 1 7.2407 -1.8766 0.9711 32 1 5.9618 -0.6601 1.1284 33 1 5.7016 -3.6394 0.6676 34 1 4.9877 -2.6486 1.9487 35 1 2.6518 -3.1176 1.6107 36 1 2.0929 -3.4216 -0.0517 37 1 2.8671 -5.3596 -1.2879 38 1 3.7529 -7.6539 -1.1662 39 1 4.8634 -8.4375 0.8871 40 1 5.0948 -6.9244 2.8159 41 1 4.2160 -4.6277 2.6913 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260181888.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:52 Heat of formation + Delta-G solvation = 36.428748 kcal Electronic energy + Delta-G solvation = -20152.783991 eV Core-core repulsion = 17418.572083 eV Total energy + Delta-G solvation = -2734.211907 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.37912 -38.09263 -34.41169 -33.08377 -31.25148 -30.83255 -30.55881 -26.75719 -26.11398 -23.91583 -22.51021 -22.06783 -20.85349 -19.71836 -18.59456 -17.17379 -16.15622 -15.61383 -14.97699 -14.81231 -14.41760 -14.01310 -13.83806 -13.43249 -13.18984 -13.10180 -12.94679 -12.37161 -12.08168 -12.02101 -11.66542 -11.52077 -11.22715 -10.87745 -10.72986 -10.61870 -10.45530 -10.13276 -10.04450 -9.77501 -9.59473 -9.40182 -8.85370 -8.62191 -8.60358 -8.26589 -7.16308 -6.10115 -4.11736 1.67703 1.71547 3.26301 3.36297 3.38009 4.08221 4.38405 4.90574 5.16603 5.19008 5.20997 5.25628 5.29670 5.41667 5.46297 5.60669 5.81459 5.84865 5.89196 5.98548 6.13196 6.13735 6.20952 6.29621 6.38633 6.45677 6.47854 6.54577 6.60814 6.75799 6.77749 6.79348 6.81791 6.93065 7.02734 7.03404 7.17361 7.33734 7.45989 7.52840 8.04199 8.23941 8.65482 8.92393 9.52269 11.00205 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.022057 B = 0.007164 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.115548 B = 3907.327930 C = 4662.734889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.076 3.924 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.095 0.905 9 C 0.195 3.805 10 H 0.009 0.991 11 C -0.118 4.118 12 C -0.116 4.116 13 C -0.106 4.106 14 C -0.118 4.118 15 C 0.065 3.935 16 N -0.528 5.528 17 C 0.104 3.896 18 C -0.065 4.065 19 C -0.101 4.101 20 C -0.125 4.125 21 C -0.135 4.135 22 C -0.126 4.126 23 C -0.119 4.119 24 H 0.264 0.736 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.020 0.980 35 H 0.041 0.959 36 H 0.104 0.896 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.762 -8.670 1.086 13.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.572 4.572 8 H 0.113 0.887 9 C 0.087 3.913 10 H 0.026 0.974 11 C -0.156 4.156 12 C -0.154 4.154 13 C -0.143 4.143 14 C -0.155 4.155 15 C -0.063 4.063 16 N -0.253 5.253 17 C -0.022 4.022 18 C -0.066 4.066 19 C -0.120 4.120 20 C -0.143 4.143 21 C -0.153 4.153 22 C -0.144 4.144 23 C -0.137 4.137 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.059 0.941 36 H 0.122 0.878 37 H 0.141 0.859 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.703 -8.659 0.643 13.783 hybrid contribution 0.233 1.306 0.801 1.550 sum 10.936 -7.353 1.445 13.258 Atomic orbital electron populations 1.69888 1.06204 1.26992 1.50380 1.24957 0.94647 0.98866 0.94169 0.86993 0.80379 0.83888 0.78313 1.20203 1.22283 1.18769 1.21647 0.88811 0.95234 1.51548 0.88708 1.19322 0.94981 0.84688 0.92287 0.97375 1.20804 0.93732 0.99984 1.01076 1.20698 0.97171 0.97486 1.00030 1.21242 0.97505 0.99361 0.96226 1.21356 0.97855 0.98912 0.97416 1.22326 0.91390 0.97908 0.94630 1.60718 1.03146 1.09663 1.51759 1.21226 0.95076 0.85906 1.00014 1.20355 0.96191 0.96916 0.93122 1.21107 0.99318 0.93159 0.98402 1.21107 0.99164 0.96217 0.97785 1.21008 1.00931 0.99337 0.94021 1.21033 1.00763 0.94213 0.98388 1.21129 0.98769 0.95771 0.98044 0.92616 0.93144 0.91927 0.93474 0.93648 0.93446 0.90974 0.92660 0.92601 0.92086 0.96184 0.94112 0.87784 0.85888 0.86654 0.86901 0.86823 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.96 55.43 0.77 -25.94 16 2 C 0.08 2.13 5.41 -17.82 -0.10 2.04 16 3 Si 0.88 21.52 24.75 -169.99 -4.21 17.32 16 4 H -0.28 -6.65 6.86 56.52 0.39 -6.26 16 5 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.26 -6.24 6.23 56.52 0.35 -5.89 16 7 C -0.53 -14.31 8.20 -34.44 -0.28 -14.59 16 8 H 0.10 2.66 4.96 -52.49 -0.26 2.40 16 9 C 0.20 4.49 1.48 -69.74 -0.10 4.39 16 10 H 0.01 0.21 5.51 -51.93 -0.29 -0.08 16 11 C -0.12 -2.54 4.01 -29.59 -0.12 -2.66 16 12 C -0.12 -2.14 5.34 -29.31 -0.16 -2.30 16 13 C -0.11 -1.71 5.63 -27.16 -0.15 -1.86 16 14 C -0.12 -1.91 5.28 -27.49 -0.15 -2.05 16 15 C 0.07 1.14 4.20 -2.81 -0.01 1.13 16 16 N -0.53 -10.65 4.08 -229.44 -0.94 -11.59 16 17 C 0.10 2.07 3.95 -4.97 -0.02 2.05 16 18 C -0.07 -1.10 4.46 -104.62 -0.47 -1.57 16 19 C -0.10 -1.58 9.70 -39.58 -0.38 -1.97 16 20 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 21 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 22 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 23 C -0.12 -1.79 8.12 -39.58 -0.32 -2.11 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 25 H 0.05 1.18 4.45 -51.92 -0.23 0.95 16 26 H 0.06 1.35 8.08 -51.93 -0.42 0.93 16 27 H 0.05 0.89 7.41 -51.93 -0.38 0.51 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.22 7.78 -51.93 -0.40 0.81 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.97 6.65 -51.93 -0.35 0.63 16 33 H 0.06 1.03 6.87 -51.92 -0.36 0.67 16 34 H 0.02 0.35 7.47 -51.93 -0.39 -0.03 16 35 H 0.04 0.86 7.94 -51.93 -0.41 0.45 16 36 H 0.10 2.28 5.67 -51.93 -0.29 1.98 16 37 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 41 H 0.12 1.67 7.58 -52.49 -0.40 1.27 16 LS Contribution 304.27 15.07 4.59 4.59 Total: -1.00 -28.51 304.27 -9.58 -38.09 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.34 Total: 3.27 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -3.45 Total: -25.73 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.16 Total: -37.53 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.21 Total: 17.32 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.51 -9.58 -38.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260181888.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.514 kcal (2) G-P(sol) polarization free energy of solvation -28.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds