Wall clock time and date at job start Mon Mar 30 2020 07:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00216 * 2 1 4 4 H 1.48503 * 109.47524 * 270.00073 * 3 2 1 5 5 H 1.48500 * 109.47223 * 30.00081 * 3 2 1 6 6 H 1.48504 * 109.47240 * 150.00213 * 3 2 1 7 7 C 1.37876 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00320 * 359.97438 * 7 2 1 9 9 C 1.50710 * 120.00056 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.71599 * 55.08859 * 9 7 2 11 11 C 1.53979 * 109.69304 * 294.52596 * 9 7 2 12 12 C 1.45875 * 112.66214 * 158.90229 * 11 9 7 13 13 C 1.54520 * 111.67526 * 61.49533 * 12 11 9 14 14 C 1.50536 * 108.85750 * 282.75362 * 13 12 11 15 15 C 1.53913 * 112.85179 * 91.81203 * 14 13 12 16 16 N 1.44301 * 109.69258 * 175.65928 * 9 7 2 17 17 C 1.46903 * 110.99876 * 341.05109 * 16 9 7 18 18 C 1.50701 * 109.46919 * 179.28204 * 17 16 9 19 19 C 1.38237 * 120.00100 * 269.73049 * 18 17 16 20 20 C 1.38235 * 120.00206 * 179.81021 * 19 18 17 21 21 C 1.38244 * 119.99536 * 0.41546 * 20 19 18 22 22 C 1.38230 * 120.00069 * 359.81555 * 21 20 19 23 23 C 1.38231 * 119.99987 * 90.00003 * 18 17 16 24 24 H 0.97000 * 119.99878 * 0.02562 * 1 2 3 25 25 H 1.09007 * 108.84658 * 38.08220 * 11 9 7 26 26 H 1.09007 * 108.84568 * 279.72603 * 11 9 7 27 27 H 1.09005 * 109.03994 * 300.93636 * 12 11 9 28 28 H 1.08995 * 109.04374 * 182.06518 * 12 11 9 29 29 H 1.09001 * 109.57342 * 162.93492 * 13 12 11 30 30 H 1.09000 * 109.57142 * 42.56621 * 13 12 11 31 31 H 1.09001 * 108.78356 * 212.64571 * 14 13 12 32 32 H 1.08994 * 108.78871 * 330.97248 * 14 13 12 33 33 H 1.09008 * 108.71420 * 78.69479 * 15 14 13 34 34 H 1.08999 * 108.71468 * 196.70031 * 15 14 13 35 35 H 1.08994 * 109.47285 * 299.28243 * 17 16 9 36 36 H 1.08997 * 109.47015 * 59.28600 * 17 16 9 37 37 H 1.08003 * 119.99978 * 359.97438 * 19 18 17 38 38 H 1.07996 * 120.00561 * 180.20882 * 20 19 18 39 39 H 1.08001 * 119.99594 * 179.78653 * 21 20 19 40 40 H 1.08000 * 120.00126 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.00308 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 1 3.8796 -0.6071 0.8403 11 6 4.0300 -0.5921 -1.3201 12 6 5.4019 -0.1073 -1.2158 13 6 6.3851 -1.2475 -0.8683 14 6 6.2654 -1.5630 0.5988 15 6 5.2426 -2.6758 0.8893 16 7 3.9978 -2.5489 0.1012 17 6 2.9541 -3.4453 0.6161 18 6 3.4920 -4.8510 0.6923 19 6 3.3578 -5.7020 -0.3888 20 6 3.8547 -6.9901 -0.3204 21 6 4.4782 -7.4300 0.8324 22 6 4.6081 -6.5806 1.9152 23 6 4.1146 -5.2912 1.8453 24 1 -0.4850 0.8401 -0.0004 25 1 3.3840 0.2381 -1.6061 26 1 3.9842 -1.3550 -2.0974 27 1 5.4516 0.6545 -0.4378 28 1 5.6951 0.3376 -2.1666 29 1 7.4042 -0.9318 -1.0920 30 1 6.1386 -2.1334 -1.4536 31 1 7.2407 -1.8766 0.9711 32 1 5.9618 -0.6601 1.1284 33 1 5.7016 -3.6394 0.6676 34 1 4.9877 -2.6486 1.9487 35 1 2.6518 -3.1176 1.6107 36 1 2.0929 -3.4216 -0.0517 37 1 2.8671 -5.3596 -1.2879 38 1 3.7529 -7.6539 -1.1662 39 1 4.8634 -8.4375 0.8871 40 1 5.0948 -6.9244 2.8159 41 1 4.2160 -4.6277 2.6913 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260181888.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:51 Heat of formation + Delta-G solvation = 20.113123 kcal Electronic energy + Delta-G solvation = -20153.491489 eV Core-core repulsion = 17418.572083 eV Total energy + Delta-G solvation = -2734.919406 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.77891 -39.44912 -35.87623 -34.99158 -33.03153 -32.13173 -31.67922 -28.41796 -27.75891 -25.40538 -24.12014 -23.28496 -22.12570 -21.24791 -20.24987 -18.98354 -17.44414 -17.25993 -16.45327 -16.22823 -15.78449 -15.65598 -15.26932 -15.00178 -14.84912 -14.49272 -14.18676 -13.93988 -13.57010 -13.36728 -13.15023 -13.11461 -12.85839 -12.66183 -12.38227 -11.98564 -11.79207 -11.64136 -11.45094 -11.35633 -11.29776 -11.06961 -10.76099 -10.69251 -9.71947 -9.54510 -8.82875 -8.28449 -6.33413 0.53424 0.59673 1.28306 1.31619 1.41249 2.30761 2.90345 3.03473 3.39805 3.86532 3.99724 4.06518 4.13757 4.17474 4.25718 4.33456 4.40828 4.52760 4.53219 4.66198 4.73601 4.77282 4.88970 4.91102 4.94877 5.05879 5.09619 5.15474 5.23380 5.26113 5.27743 5.39535 5.45248 5.54962 5.61431 5.65253 5.69063 5.75743 5.88907 6.06214 6.21481 6.42709 6.78389 6.81683 7.34921 8.84582 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.022057 B = 0.007164 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.115548 B = 3907.327930 C = 4662.734889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.021 3.979 3 Si 0.931 3.069 4 H -0.265 1.265 5 H -0.297 1.297 6 H -0.248 1.248 7 C -0.535 4.535 8 H 0.068 0.932 9 C 0.202 3.798 10 H -0.004 1.004 11 C -0.111 4.111 12 C -0.119 4.119 13 C -0.099 4.099 14 C -0.118 4.118 15 C 0.067 3.933 16 N -0.530 5.530 17 C 0.118 3.882 18 C -0.086 4.086 19 C -0.119 4.119 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.121 4.121 23 C -0.127 4.127 24 H 0.264 0.736 25 H 0.030 0.970 26 H 0.057 0.943 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.015 0.985 35 H 0.014 0.986 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.294 -9.992 1.177 17.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.225 1.225 6 H -0.172 1.172 7 C -0.573 4.573 8 H 0.085 0.915 9 C 0.093 3.907 10 H 0.013 0.987 11 C -0.149 4.149 12 C -0.157 4.157 13 C -0.136 4.136 14 C -0.155 4.155 15 C -0.061 4.061 16 N -0.255 5.255 17 C -0.009 4.009 18 C -0.086 4.086 19 C -0.137 4.137 20 C -0.140 4.140 21 C -0.144 4.144 22 C -0.139 4.139 23 C -0.146 4.146 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.087 0.913 37 H 0.130 0.870 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.162 0.838 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 14.261 -9.996 0.734 17.431 hybrid contribution -0.903 1.540 0.792 1.953 sum 13.358 -8.456 1.525 15.883 Atomic orbital electron populations 1.70026 1.07921 1.27804 1.52705 1.25717 0.95294 1.02417 0.94258 0.86078 0.79601 0.79681 0.78890 1.19085 1.22464 1.17226 1.22015 0.91261 0.94253 1.49791 0.91470 1.19137 0.92359 0.86428 0.92751 0.98665 1.20687 0.95701 0.98987 0.99518 1.20694 0.95468 0.98338 1.01170 1.21208 0.98547 0.98095 0.95797 1.21407 0.98806 0.97674 0.97660 1.22400 0.90346 0.99409 0.93909 1.60726 1.04056 1.07948 1.52752 1.20876 0.94374 0.88404 0.97294 1.20059 0.98483 0.95195 0.94906 1.21133 1.00327 0.94466 0.97822 1.21399 0.98163 0.95234 0.99213 1.21454 0.99279 1.00708 0.92970 1.21376 0.99729 0.93023 0.99770 1.21169 0.99131 0.97094 0.97200 0.92652 0.95168 0.92452 0.93877 0.91475 0.90103 0.91682 0.89256 0.93915 0.90842 0.96644 0.96810 0.91309 0.87003 0.84057 0.83314 0.83801 0.86792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.02 13.96 21.45 0.30 -58.72 16 2 C 0.02 1.23 5.41 84.65 0.46 1.69 16 3 Si 0.93 45.31 24.75 68.60 1.70 47.01 16 4 H -0.27 -12.38 6.86 99.48 0.68 -11.70 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 6 H -0.25 -11.38 6.23 99.48 0.62 -10.76 16 7 C -0.54 -30.25 8.20 25.60 0.21 -30.04 16 8 H 0.07 4.11 4.96 -2.91 -0.01 4.09 16 9 C 0.20 9.51 1.48 44.99 0.07 9.58 16 10 H 0.00 -0.21 5.51 -2.39 -0.01 -0.22 16 11 C -0.11 -4.75 4.01 28.74 0.12 -4.63 16 12 C -0.12 -4.12 5.34 28.93 0.15 -3.96 16 13 C -0.10 -2.88 5.63 30.31 0.17 -2.71 16 14 C -0.12 -3.50 5.28 30.10 0.16 -3.34 16 15 C 0.07 2.27 4.20 86.42 0.36 2.63 16 16 N -0.53 -21.89 4.08 -879.82 -3.59 -25.48 16 17 C 0.12 4.97 3.95 85.56 0.34 5.31 16 18 C -0.09 -2.95 4.46 -19.87 -0.09 -3.04 16 19 C -0.12 -3.71 9.70 22.27 0.22 -3.50 16 20 C -0.12 -2.98 10.05 22.27 0.22 -2.75 16 21 C -0.13 -2.69 10.05 22.27 0.22 -2.46 16 22 C -0.12 -2.80 10.05 22.27 0.22 -2.57 16 23 C -0.13 -3.73 8.12 22.27 0.18 -3.54 16 24 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 25 H 0.03 1.40 4.45 -2.38 -0.01 1.39 16 26 H 0.06 2.48 8.08 -2.38 -0.02 2.46 16 27 H 0.04 1.53 7.41 -2.38 -0.02 1.51 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 2.01 7.78 -2.39 -0.02 1.99 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.04 1.39 6.65 -2.39 -0.02 1.37 16 33 H 0.07 2.34 6.87 -2.38 -0.02 2.32 16 34 H 0.02 0.54 7.47 -2.39 -0.02 0.52 16 35 H 0.01 0.63 7.94 -2.39 -0.02 0.61 16 36 H 0.07 3.33 5.67 -2.39 -0.01 3.32 16 37 H 0.11 3.62 8.06 -2.91 -0.02 3.60 16 38 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 39 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 41 H 0.11 3.28 7.58 -2.91 -0.02 3.25 16 Total: -1.00 -64.88 304.27 2.31 -62.57 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.89 Total: 17.96 kcal Atomic # 6 Polarization: -46.36 SS G_CDS: 3.01 Total: -43.34 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -3.29 Total: -84.21 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.70 Total: 47.01 kcal Total: -64.88 2.31 -62.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260181888.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.686 kcal (2) G-P(sol) polarization free energy of solvation -64.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds