Wall clock time and date at job start Mon Mar 30 2020 07:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86801 * 119.99751 * 2 1 4 4 H 1.48496 * 109.47021 * 307.44224 * 3 2 1 5 5 H 1.48495 * 109.47358 * 67.44699 * 3 2 1 6 6 H 1.48504 * 109.46931 * 187.44641 * 3 2 1 7 7 C 1.37876 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00068 * 328.87226 * 7 2 1 9 9 C 1.50699 * 119.99937 * 149.13976 * 7 2 1 10 10 N 1.46900 * 109.46967 * 96.96715 * 9 7 2 11 11 C 1.46900 * 110.99943 * 313.17597 * 10 9 7 12 12 C 1.50703 * 109.47173 * 120.48947 * 11 10 9 13 13 C 1.38232 * 119.99912 * 269.72546 * 12 11 10 14 14 C 1.38228 * 120.00163 * 179.76811 * 13 12 11 15 15 C 1.38238 * 119.99773 * 0.50225 * 14 13 12 16 16 C 1.38233 * 119.99942 * 359.75581 * 15 14 13 17 17 C 1.38229 * 119.99967 * 359.97438 * 16 15 14 18 18 C 1.52992 * 109.47071 * 336.96681 * 9 7 2 19 19 C 1.53005 * 109.47408 * 299.99638 * 18 9 7 20 20 C 1.52994 * 109.47429 * 300.00396 * 19 18 9 21 21 C 1.53002 * 109.47108 * 59.99035 * 20 19 18 22 22 C 1.52997 * 109.47674 * 300.00583 * 21 20 19 23 23 H 0.97000 * 119.99845 * 0.02562 * 1 2 3 24 24 H 1.00907 * 110.99853 * 77.12787 * 10 9 7 25 25 H 1.08998 * 109.47019 * 240.48845 * 11 10 9 26 26 H 1.09005 * 109.47189 * 0.48984 * 11 10 9 27 27 H 1.08010 * 120.00124 * 359.97438 * 13 12 11 28 28 H 1.07998 * 120.00582 * 180.23102 * 14 13 12 29 29 H 1.08004 * 120.00171 * 179.72235 * 15 14 13 30 30 H 1.07998 * 119.99955 * 179.97438 * 16 15 14 31 31 H 1.08000 * 120.00225 * 179.97438 * 17 16 15 32 32 H 1.08999 * 109.47638 * 60.00060 * 18 9 7 33 33 H 1.09004 * 109.47683 * 179.97438 * 18 9 7 34 34 H 1.08997 * 109.47192 * 179.97438 * 19 18 9 35 35 H 1.09003 * 109.46508 * 60.00305 * 19 18 9 36 36 H 1.09008 * 109.46594 * 299.99828 * 20 19 18 37 37 H 1.08999 * 109.47472 * 179.97438 * 20 19 18 38 38 H 1.09004 * 109.47211 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.46471 * 60.00634 * 21 20 19 40 40 H 1.08995 * 109.47140 * 300.00005 * 22 21 20 41 41 H 1.08993 * 109.46988 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.7595 2.4720 -1.1116 5 1 2.0317 2.3150 1.2929 6 1 3.6990 1.3523 -0.1815 7 6 2.0047 -1.1940 0.0005 8 1 1.5813 -2.0618 0.4844 9 6 3.3516 -1.2866 -0.6689 10 7 4.4103 -1.1256 0.3368 11 6 4.1321 0.0183 1.2155 12 6 4.0327 -0.4567 2.6422 13 6 2.8107 -0.8468 3.1573 14 6 2.7203 -1.2870 4.4645 15 6 3.8502 -1.3274 5.2598 16 6 5.0714 -0.9323 4.7464 17 6 5.1627 -0.4974 3.4375 18 6 3.4753 -0.1827 -1.7208 19 6 2.3727 -0.3504 -2.7683 20 6 2.5139 -1.7161 -3.4433 21 6 2.3903 -2.8201 -2.3912 22 6 3.4929 -2.6524 -1.3439 23 1 -0.4850 0.8401 -0.0004 24 1 4.5318 -1.9720 0.8725 25 1 4.9387 0.7464 1.1303 26 1 3.1909 0.4824 0.9207 27 1 1.9270 -0.8107 2.5373 28 1 1.7662 -1.5953 4.8658 29 1 3.7789 -1.6671 6.2826 30 1 5.9540 -0.9635 5.3679 31 1 6.1166 -0.1883 3.0364 32 1 3.3747 0.7904 -1.2400 33 1 4.4498 -0.2493 -2.2048 34 1 2.4606 0.4364 -3.5175 35 1 1.3985 -0.2833 -2.2841 36 1 3.4883 -1.7830 -3.9274 37 1 1.7282 -1.8357 -4.1892 38 1 2.4904 -3.7932 -2.8722 39 1 1.4160 -2.7531 -1.9071 40 1 4.4671 -2.7194 -1.8280 41 1 3.4045 -3.4387 -0.5942 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261120712.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:15 Heat of formation + Delta-G solvation = 77.825101 kcal Electronic energy + Delta-G solvation = -20661.819182 eV Core-core repulsion = 17929.402355 eV Total energy + Delta-G solvation = -2732.416827 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.28099 -38.16020 -34.51518 -32.36864 -30.87812 -30.36681 -29.97983 -27.86129 -25.23010 -24.44944 -22.02097 -21.98982 -20.78108 -20.20194 -18.41784 -16.91015 -16.10259 -15.73375 -14.84073 -14.59975 -14.29957 -13.99529 -13.65695 -13.12762 -12.95530 -12.90276 -12.50236 -12.32428 -12.18171 -11.98605 -11.49334 -11.24749 -11.21114 -10.73029 -10.58794 -10.29512 -10.15842 -9.90783 -9.82259 -9.64876 -9.44964 -8.99524 -8.54376 -8.43467 -8.25199 -7.79945 -7.13220 -6.32770 -4.12934 1.82239 1.90290 3.21456 3.24127 3.38896 4.25077 4.28075 4.90488 5.31175 5.34326 5.42614 5.47978 5.64072 5.73117 5.74100 5.91412 5.97223 6.09652 6.25150 6.31433 6.34957 6.39040 6.52049 6.54186 6.55182 6.56958 6.62226 6.68323 6.70676 6.84926 6.88833 7.03617 7.05803 7.22534 7.28926 7.31041 7.33468 7.45960 7.54085 7.65817 8.20984 8.36345 8.57497 8.85961 9.41812 10.77331 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.023706 B = 0.008334 C = 0.007603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.873608 B = 3359.064986 C = 3682.040539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.093 3.907 3 Si 0.830 3.170 4 H -0.301 1.301 5 H -0.297 1.297 6 H -0.208 1.208 7 C -0.546 4.546 8 H 0.070 0.930 9 C 0.206 3.794 10 N -0.681 5.681 11 C 0.102 3.898 12 C -0.092 4.092 13 C -0.095 4.095 14 C -0.128 4.128 15 C -0.132 4.132 16 C -0.133 4.133 17 C -0.116 4.116 18 C -0.127 4.127 19 C -0.120 4.120 20 C -0.105 4.105 21 C -0.105 4.105 22 C -0.089 4.089 23 H 0.263 0.737 24 H 0.327 0.673 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.142 0.858 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.035 0.965 35 H 0.090 0.910 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.783 -1.537 2.893 7.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.112 4.112 3 Si 0.663 3.337 4 H -0.231 1.231 5 H -0.226 1.226 6 H -0.135 1.135 7 C -0.584 4.584 8 H 0.088 0.912 9 C 0.118 3.882 10 N -0.310 5.310 11 C -0.025 4.025 12 C -0.093 4.093 13 C -0.113 4.113 14 C -0.146 4.146 15 C -0.151 4.151 16 C -0.151 4.151 17 C -0.135 4.135 18 C -0.164 4.164 19 C -0.157 4.157 20 C -0.143 4.143 21 C -0.143 4.143 22 C -0.128 4.128 23 H 0.073 0.927 24 H 0.144 0.856 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.160 0.840 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.008 -1.112 2.434 7.502 hybrid contribution -0.491 0.603 0.695 1.043 sum 6.518 -0.509 3.129 7.248 Atomic orbital electron populations 1.70216 1.06716 1.27210 1.45281 1.25153 0.94036 0.98804 0.93223 0.88809 0.83672 0.84698 0.76475 1.23055 1.22576 1.13513 1.21160 1.01969 0.97448 1.37796 0.91199 1.18944 0.88798 0.91465 0.89015 1.61391 1.47617 1.06104 1.15908 1.21563 0.99683 0.94940 0.86364 1.20598 0.93106 0.98470 0.97098 1.21587 0.98894 0.95894 0.94946 1.21174 0.98154 1.00659 0.94632 1.21028 0.93199 1.01526 0.99310 1.20991 0.97280 1.01102 0.95733 1.21058 0.98136 1.00450 0.93861 1.22256 0.96920 1.00303 0.96919 1.21601 1.01963 0.95185 0.96996 1.21379 0.99450 0.96178 0.97257 1.21375 1.01189 0.95725 0.96028 1.21363 0.96674 0.97510 0.97218 0.92652 0.85630 0.92623 0.91446 0.84042 0.86678 0.87002 0.86910 0.86530 0.91834 0.93846 0.94642 0.89163 0.93749 0.93567 0.94471 0.90214 0.94120 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.80 13.96 55.43 0.77 -23.02 16 2 C 0.09 2.40 2.97 -17.82 -0.05 2.34 16 3 Si 0.83 20.00 21.38 -169.99 -3.63 16.37 16 4 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 5 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.21 -4.68 3.28 56.52 0.19 -4.50 16 7 C -0.55 -13.49 4.75 -34.44 -0.16 -13.65 16 8 H 0.07 1.93 8.06 -52.49 -0.42 1.51 16 9 C 0.21 4.50 0.72 -132.76 -0.10 4.40 16 10 N -0.68 -14.08 6.50 -102.40 -0.67 -14.74 16 11 C 0.10 2.14 3.51 -4.97 -0.02 2.12 16 12 C -0.09 -1.77 4.95 -104.62 -0.52 -2.29 16 13 C -0.09 -1.89 9.48 -39.59 -0.38 -2.27 16 14 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 15 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 16 C -0.13 -1.98 10.05 -39.59 -0.40 -2.38 16 17 C -0.12 -1.94 9.70 -39.59 -0.38 -2.32 16 18 C -0.13 -2.77 4.12 -26.73 -0.11 -2.88 16 19 C -0.12 -2.53 5.15 -26.73 -0.14 -2.67 16 20 C -0.11 -1.96 5.92 -26.73 -0.16 -2.12 16 21 C -0.11 -2.04 5.70 -26.73 -0.15 -2.19 16 22 C -0.09 -1.78 4.84 -26.73 -0.13 -1.91 16 23 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 24 H 0.33 6.57 7.89 -39.29 -0.31 6.26 16 25 H 0.06 1.12 7.70 -51.93 -0.40 0.72 16 26 H 0.07 1.55 0.53 -51.93 -0.03 1.52 16 27 H 0.14 3.23 6.30 -52.48 -0.33 2.90 16 28 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 29 H 0.11 1.37 8.06 -52.48 -0.42 0.94 16 30 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 31 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.06 1.46 1.49 -51.93 -0.08 1.39 16 33 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 2.19 5.75 -51.93 -0.30 1.89 16 36 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.76 7.22 -51.93 -0.37 1.38 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 293.73 15.07 4.43 4.43 Total: -1.00 -26.28 293.73 -8.83 -35.11 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -6.24 Total: 12.65 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: -3.49 Total: -30.79 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.11 Total: -37.77 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -3.63 Total: 16.37 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.28 -8.83 -35.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261120712.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.937 kcal (2) G-P(sol) polarization free energy of solvation -26.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds