Wall clock time and date at job start Mon Mar 30 2020 07:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86801 * 119.99751 * 2 1 4 4 H 1.48496 * 109.47021 * 307.44224 * 3 2 1 5 5 H 1.48495 * 109.47358 * 67.44699 * 3 2 1 6 6 H 1.48504 * 109.46931 * 187.44641 * 3 2 1 7 7 C 1.37876 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00068 * 328.87226 * 7 2 1 9 9 C 1.50699 * 119.99937 * 149.13976 * 7 2 1 10 10 N 1.46900 * 109.46967 * 96.96715 * 9 7 2 11 11 C 1.46900 * 110.99943 * 313.17597 * 10 9 7 12 12 C 1.50703 * 109.47173 * 120.48947 * 11 10 9 13 13 C 1.38232 * 119.99912 * 269.72546 * 12 11 10 14 14 C 1.38228 * 120.00163 * 179.76811 * 13 12 11 15 15 C 1.38238 * 119.99773 * 0.50225 * 14 13 12 16 16 C 1.38233 * 119.99942 * 359.75581 * 15 14 13 17 17 C 1.38229 * 119.99967 * 359.97438 * 16 15 14 18 18 C 1.52992 * 109.47071 * 336.96681 * 9 7 2 19 19 C 1.53005 * 109.47408 * 299.99638 * 18 9 7 20 20 C 1.52994 * 109.47429 * 300.00396 * 19 18 9 21 21 C 1.53002 * 109.47108 * 59.99035 * 20 19 18 22 22 C 1.52997 * 109.47674 * 300.00583 * 21 20 19 23 23 H 0.97000 * 119.99845 * 0.02562 * 1 2 3 24 24 H 1.00907 * 110.99853 * 77.12787 * 10 9 7 25 25 H 1.08998 * 109.47019 * 240.48845 * 11 10 9 26 26 H 1.09005 * 109.47189 * 0.48984 * 11 10 9 27 27 H 1.08010 * 120.00124 * 359.97438 * 13 12 11 28 28 H 1.07998 * 120.00582 * 180.23102 * 14 13 12 29 29 H 1.08004 * 120.00171 * 179.72235 * 15 14 13 30 30 H 1.07998 * 119.99955 * 179.97438 * 16 15 14 31 31 H 1.08000 * 120.00225 * 179.97438 * 17 16 15 32 32 H 1.08999 * 109.47638 * 60.00060 * 18 9 7 33 33 H 1.09004 * 109.47683 * 179.97438 * 18 9 7 34 34 H 1.08997 * 109.47192 * 179.97438 * 19 18 9 35 35 H 1.09003 * 109.46508 * 60.00305 * 19 18 9 36 36 H 1.09008 * 109.46594 * 299.99828 * 20 19 18 37 37 H 1.08999 * 109.47472 * 179.97438 * 20 19 18 38 38 H 1.09004 * 109.47211 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.46471 * 60.00634 * 21 20 19 40 40 H 1.08995 * 109.47140 * 300.00005 * 22 21 20 41 41 H 1.08993 * 109.46988 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.7595 2.4720 -1.1116 5 1 2.0317 2.3150 1.2929 6 1 3.6990 1.3523 -0.1815 7 6 2.0047 -1.1940 0.0005 8 1 1.5813 -2.0618 0.4844 9 6 3.3516 -1.2866 -0.6689 10 7 4.4103 -1.1256 0.3368 11 6 4.1321 0.0183 1.2155 12 6 4.0327 -0.4567 2.6422 13 6 2.8107 -0.8468 3.1573 14 6 2.7203 -1.2870 4.4645 15 6 3.8502 -1.3274 5.2598 16 6 5.0714 -0.9323 4.7464 17 6 5.1627 -0.4974 3.4375 18 6 3.4753 -0.1827 -1.7208 19 6 2.3727 -0.3504 -2.7683 20 6 2.5139 -1.7161 -3.4433 21 6 2.3903 -2.8201 -2.3912 22 6 3.4929 -2.6524 -1.3439 23 1 -0.4850 0.8401 -0.0004 24 1 4.5318 -1.9720 0.8725 25 1 4.9387 0.7464 1.1303 26 1 3.1909 0.4824 0.9207 27 1 1.9270 -0.8107 2.5373 28 1 1.7662 -1.5953 4.8658 29 1 3.7789 -1.6671 6.2826 30 1 5.9540 -0.9635 5.3679 31 1 6.1166 -0.1883 3.0364 32 1 3.3747 0.7904 -1.2400 33 1 4.4498 -0.2493 -2.2048 34 1 2.4606 0.4364 -3.5175 35 1 1.3985 -0.2833 -2.2841 36 1 3.4883 -1.7830 -3.9274 37 1 1.7282 -1.8357 -4.1892 38 1 2.4904 -3.7932 -2.8722 39 1 1.4160 -2.7531 -1.9071 40 1 4.4671 -2.7194 -1.8280 41 1 3.4045 -3.4387 -0.5942 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261120712.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:15 Heat of formation + Delta-G solvation = 61.540535 kcal Electronic energy + Delta-G solvation = -20662.525334 eV Core-core repulsion = 17929.402355 eV Total energy + Delta-G solvation = -2733.122979 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.86089 -39.63998 -36.08127 -34.33641 -32.37389 -31.68653 -31.65316 -29.44802 -27.10769 -26.10619 -23.60571 -23.32839 -22.30733 -21.77002 -20.22839 -18.61916 -17.69270 -17.40545 -16.37255 -16.07572 -15.96464 -15.63882 -15.28756 -14.69718 -14.62833 -14.35228 -14.16778 -13.98064 -13.78548 -13.42263 -13.15772 -13.01163 -12.78248 -12.36032 -12.12493 -11.90152 -11.81066 -11.69571 -11.50143 -11.28888 -11.17120 -10.69560 -10.44954 -9.75500 -9.72395 -9.57038 -8.86784 -8.38811 -6.16814 0.50006 0.57199 1.25135 1.27530 1.37876 2.25873 2.89119 2.97734 3.75669 3.95512 4.07505 4.10187 4.14210 4.22852 4.36383 4.36830 4.55491 4.65880 4.70406 4.72736 4.75394 4.86451 4.88802 4.91540 4.97952 5.05434 5.08686 5.20555 5.20849 5.27028 5.47007 5.53553 5.56245 5.61686 5.64917 5.68773 5.72040 5.86699 5.90261 6.20946 6.32636 6.45604 6.79743 6.88825 7.39242 8.75680 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.023706 B = 0.008334 C = 0.007603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.873608 B = 3359.064986 C = 3682.040539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.062 3.938 3 Si 0.870 3.130 4 H -0.316 1.316 5 H -0.316 1.316 6 H -0.171 1.171 7 C -0.520 4.520 8 H 0.027 0.973 9 C 0.203 3.797 10 N -0.670 5.670 11 C 0.096 3.904 12 C -0.111 4.111 13 C -0.125 4.125 14 C -0.138 4.138 15 C -0.123 4.123 16 C -0.122 4.122 17 C -0.115 4.115 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.100 4.100 21 C -0.103 4.103 22 C -0.087 4.087 23 H 0.259 0.741 24 H 0.330 0.670 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.097 0.903 28 H 0.123 0.877 29 H 0.149 0.851 30 H 0.154 0.846 31 H 0.138 0.862 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.378 -2.147 3.336 11.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.139 4.139 3 Si 0.704 3.296 4 H -0.247 1.247 5 H -0.246 1.246 6 H -0.096 1.096 7 C -0.559 4.559 8 H 0.045 0.955 9 C 0.114 3.886 10 N -0.298 5.298 11 C -0.032 4.032 12 C -0.112 4.112 13 C -0.144 4.144 14 C -0.156 4.156 15 C -0.141 4.141 16 C -0.140 4.140 17 C -0.134 4.134 18 C -0.164 4.164 19 C -0.161 4.161 20 C -0.138 4.138 21 C -0.141 4.141 22 C -0.125 4.125 23 H 0.068 0.932 24 H 0.147 0.853 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.115 0.885 28 H 0.141 0.859 29 H 0.167 0.833 30 H 0.172 0.828 31 H 0.156 0.844 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.638 -1.734 2.878 11.156 hybrid contribution -1.626 0.698 0.671 1.893 sum 9.012 -1.036 3.549 9.740 Atomic orbital electron populations 1.70306 1.08291 1.27363 1.48508 1.25569 0.94128 1.00974 0.93225 0.88275 0.85180 0.81480 0.74667 1.24685 1.24642 1.09611 1.21143 1.03074 0.95345 1.36323 0.95505 1.18973 0.87166 0.93086 0.89336 1.61374 1.46262 1.06290 1.15873 1.21543 0.98640 0.95143 0.87838 1.20476 0.93907 1.00123 0.96730 1.21342 0.97949 0.98959 0.96183 1.21342 0.99866 1.00600 0.93772 1.21439 0.92263 0.99839 1.00542 1.21464 0.98565 0.98734 0.95217 1.21297 0.97792 0.99902 0.94415 1.22239 0.98154 0.99089 0.96965 1.21578 0.99659 0.97604 0.97236 1.21361 1.01459 0.93923 0.97015 1.21327 0.98819 0.97825 0.96159 1.21345 0.97992 0.95905 0.97283 0.93152 0.85315 0.91254 0.93910 0.88491 0.85859 0.83322 0.82828 0.84373 0.93268 0.91687 0.93013 0.93083 0.91022 0.92244 0.91511 0.94216 0.91780 0.94198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.88 13.96 21.45 0.30 -53.58 16 2 C 0.06 3.38 2.97 84.65 0.25 3.63 16 3 Si 0.87 42.85 21.38 68.60 1.47 44.31 16 4 H -0.32 -16.09 7.11 99.48 0.71 -15.39 16 5 H -0.32 -16.29 7.11 99.48 0.71 -15.59 16 6 H -0.17 -7.49 3.28 99.48 0.33 -7.16 16 7 C -0.52 -26.97 4.75 25.60 0.12 -26.84 16 8 H 0.03 1.59 8.06 -2.91 -0.02 1.57 16 9 C 0.20 8.78 0.72 2.78 0.00 8.78 16 10 N -0.67 -26.77 6.50 -477.87 -3.10 -29.87 16 11 C 0.10 3.95 3.51 85.56 0.30 4.25 16 12 C -0.11 -4.24 4.95 -19.87 -0.10 -4.34 16 13 C -0.13 -5.18 9.48 22.27 0.21 -4.96 16 14 C -0.14 -4.64 10.05 22.27 0.22 -4.42 16 15 C -0.12 -3.27 10.05 22.27 0.22 -3.05 16 16 C -0.12 -3.10 10.05 22.27 0.22 -2.87 16 17 C -0.12 -3.49 9.70 22.27 0.22 -3.27 16 18 C -0.13 -5.37 4.12 30.59 0.13 -5.24 16 19 C -0.12 -5.09 5.15 30.59 0.16 -4.93 16 20 C -0.10 -3.51 5.92 30.59 0.18 -3.33 16 21 C -0.10 -3.88 5.70 30.59 0.17 -3.71 16 22 C -0.09 -3.34 4.84 30.59 0.15 -3.19 16 23 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 24 H 0.33 12.89 7.89 -89.69 -0.71 12.18 16 25 H 0.07 2.63 7.70 -2.39 -0.02 2.61 16 26 H 0.04 2.00 0.53 -2.38 0.00 2.00 16 27 H 0.10 4.82 6.30 -2.91 -0.02 4.80 16 28 H 0.12 3.79 8.06 -2.91 -0.02 3.77 16 29 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 30 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 31 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.05 2.21 1.49 -2.39 0.00 2.21 16 33 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 2.53 5.75 -2.39 -0.01 2.52 16 36 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.04 1.79 7.22 -2.39 -0.02 1.78 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -61.03 293.73 1.06 -59.97 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: -0.06 Total: 32.67 kcal Atomic # 6 Polarization: -55.96 SS G_CDS: 2.46 Total: -53.50 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -2.80 Total: -83.45 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.47 Total: 44.31 kcal Total: -61.03 1.06 -59.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261120712.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.514 kcal (2) G-P(sol) polarization free energy of solvation -61.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds