Wall clock time and date at job start Mon Mar 30 2020 06:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37097 * 119.99962 * 2 1 4 4 H 1.08006 * 119.99731 * 142.82062 * 3 2 1 5 5 C 1.38948 * 120.00289 * 322.82347 * 3 2 1 6 6 N 1.31412 * 120.00086 * 158.40869 * 5 3 2 7 7 Si 1.86796 * 119.99794 * 338.41053 * 5 3 2 8 8 H 1.48501 * 109.47522 * 95.71705 * 7 5 3 9 9 H 1.48499 * 109.47055 * 215.71910 * 7 5 3 10 10 H 1.48504 * 109.47415 * 335.71930 * 7 5 3 11 11 C 1.34780 * 119.99798 * 179.97438 * 2 1 3 12 12 O 1.21290 * 119.99660 * 180.02562 * 11 2 1 13 13 C 1.50697 * 120.00136 * 0.02562 * 11 2 1 14 14 C 1.52997 * 109.47170 * 180.02562 * 13 11 2 15 15 C 1.50697 * 109.47170 * 179.97438 * 14 13 11 16 16 C 1.32570 * 120.00090 * 124.99598 * 15 14 13 17 17 C 1.47810 * 120.00052 * 179.97438 * 16 15 14 18 18 C 1.39535 * 120.14143 * 179.97438 * 17 16 15 19 19 C 1.37974 * 119.85908 * 179.97438 * 18 17 16 20 20 C 1.38345 * 120.13697 * 359.97438 * 19 18 17 21 21 C 1.38346 * 120.29052 * 0.02562 * 20 19 18 22 22 C 1.37966 * 120.13887 * 0.02562 * 21 20 19 23 23 H 1.08994 * 109.47091 * 265.13632 * 1 2 3 24 24 H 1.09003 * 109.46925 * 25.13653 * 1 2 3 25 25 H 1.09004 * 109.47091 * 145.13620 * 1 2 3 26 26 H 0.97003 * 119.99438 * 179.97438 * 6 5 3 27 27 H 1.08995 * 109.47395 * 59.99703 * 13 11 2 28 28 H 1.09006 * 109.46797 * 299.99821 * 13 11 2 29 29 H 1.08995 * 109.47449 * 59.99435 * 14 13 11 30 30 H 1.09006 * 109.46869 * 299.99476 * 14 13 11 31 31 H 1.08001 * 120.00145 * 304.99635 * 15 14 13 32 32 H 1.08001 * 119.99765 * 0.02562 * 16 15 14 33 33 H 1.08003 * 120.07250 * 359.95973 * 18 17 16 34 34 H 1.07995 * 119.93214 * 180.02562 * 19 18 17 35 35 H 1.08007 * 119.85251 * 179.74135 * 20 19 18 36 36 H 1.08002 * 119.93055 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.07531 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2823 0.5653 5 6 1.6676 2.2684 -0.7271 6 7 2.0434 3.4890 -0.4175 7 14 0.4841 1.9867 -2.1446 8 1 -0.9112 2.1585 -1.6663 9 1 0.7619 2.9682 -3.2238 10 1 0.6608 0.6093 -2.6708 11 6 2.1389 -1.1673 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0005 14 6 2.3796 -3.6352 0.0018 15 6 1.6261 -4.9403 0.0024 16 6 1.8653 -5.8443 -0.9373 17 6 1.1266 -7.1246 -0.9363 18 6 1.3756 -8.0779 -1.9243 19 6 0.6831 -9.2713 -1.9175 20 6 -0.2560 -9.5237 -0.9336 21 6 -0.5077 -8.5827 0.0488 22 6 0.1773 -7.3851 0.0526 23 1 -0.3633 -0.0871 1.0239 24 1 -0.3633 0.9304 -0.4365 25 1 -0.3633 -0.8432 -0.5875 26 1 1.7065 4.2436 -0.9255 27 1 0.7590 -2.5303 -0.8896 28 1 0.7584 -2.5298 0.8904 29 1 3.0056 -3.5771 0.8921 30 1 3.0069 -3.5779 -0.8878 31 1 0.8912 -5.1392 0.7685 32 1 2.6005 -5.6456 -1.7031 33 1 2.1087 -7.8820 -2.6929 34 1 0.8753 -10.0101 -2.6814 35 1 -0.7985 -10.4577 -0.9351 36 1 -1.2424 -8.7857 0.8139 37 1 -0.0197 -6.6514 0.8203 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265608963.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:02 Heat of formation + Delta-G solvation = -11.416544 kcal Electronic energy + Delta-G solvation = -17919.590641 eV Core-core repulsion = 15047.470911 eV Total energy + Delta-G solvation = -2872.119730 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.58828 -40.00765 -36.96617 -36.28029 -34.17722 -33.13920 -31.80400 -29.98029 -28.14654 -27.12869 -24.97211 -23.65693 -22.56183 -20.44100 -20.22451 -19.05559 -17.98146 -17.80400 -17.30700 -16.60938 -16.17414 -15.76153 -15.57406 -15.00614 -14.76710 -14.47061 -14.26171 -14.16432 -13.91315 -13.69636 -13.63730 -13.26310 -13.05602 -12.68032 -12.43982 -12.23577 -12.06168 -11.82574 -11.78488 -11.66490 -11.06555 -11.00241 -10.37484 -9.81918 -9.70731 -8.96477 -8.52853 -6.15613 0.04538 0.54387 1.19405 1.32578 1.45244 1.62400 1.96580 2.17253 2.76505 2.95207 3.06271 3.70868 3.89936 4.01129 4.14469 4.19480 4.27252 4.31216 4.33485 4.45544 4.55118 4.60357 4.63399 4.73884 4.78882 4.84413 5.03596 5.10382 5.19866 5.25731 5.44107 5.53004 5.58650 5.65508 5.78925 5.94183 6.02026 6.15076 6.55990 6.93827 7.30508 7.88454 8.64927 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.038065 B = 0.003396 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.404441 B = 8242.603843 C = 8444.289349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.488 5.488 3 C -0.340 4.340 4 H 0.040 0.960 5 C 0.007 3.993 6 N -0.914 5.914 7 Si 0.958 3.042 8 H -0.237 1.237 9 H -0.291 1.291 10 H -0.258 1.258 11 C 0.452 3.548 12 O -0.621 6.621 13 C -0.117 4.117 14 C -0.071 4.071 15 C -0.125 4.125 16 C -0.135 4.135 17 C -0.068 4.068 18 C -0.128 4.128 19 C -0.127 4.127 20 C -0.131 4.131 21 C -0.126 4.126 22 C -0.131 4.131 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.098 0.902 26 H 0.280 0.720 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.134 0.866 32 H 0.116 0.884 33 H 0.130 0.870 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.328 -24.774 -2.230 27.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.210 5.210 3 C -0.468 4.468 4 H 0.058 0.942 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.781 3.219 8 H -0.162 1.162 9 H -0.218 1.218 10 H -0.182 1.182 11 C 0.243 3.757 12 O -0.507 6.507 13 C -0.156 4.156 14 C -0.108 4.108 15 C -0.143 4.143 16 C -0.153 4.153 17 C -0.068 4.068 18 C -0.146 4.146 19 C -0.145 4.145 20 C -0.149 4.149 21 C -0.143 4.143 22 C -0.149 4.149 23 H 0.095 0.905 24 H 0.072 0.928 25 H 0.117 0.883 26 H 0.090 0.910 27 H 0.124 0.876 28 H 0.133 0.867 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.151 0.849 32 H 0.134 0.866 33 H 0.148 0.852 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.755 -24.549 -2.242 26.895 hybrid contribution 0.329 0.843 -0.444 1.008 sum -10.426 -23.705 -2.686 26.036 Atomic orbital electron populations 1.22257 0.79983 1.02781 1.03480 1.43896 1.06189 1.04688 1.66274 1.18683 1.09350 0.88324 1.30414 0.94176 1.26245 1.00029 0.93809 0.99406 1.69884 1.46229 0.99288 1.39747 0.85705 0.79255 0.78834 0.78095 1.16167 1.21802 1.18192 1.21550 0.88061 0.86675 0.79444 1.90516 1.16814 1.88173 1.55169 1.21571 0.98906 0.89453 1.05704 1.20318 0.96725 0.91205 1.02575 1.23344 0.98941 0.93583 0.98435 1.21780 1.00427 0.93140 0.99944 1.19247 0.96977 0.94347 0.96180 1.21526 1.00449 0.94085 0.98559 1.21400 0.96474 0.97149 0.99432 1.21559 0.98298 1.00241 0.94816 1.21411 0.99923 0.93579 0.99426 1.21579 0.96341 0.98261 0.98672 0.90502 0.92777 0.88329 0.91016 0.87560 0.86746 0.91497 0.92585 0.84861 0.86599 0.85217 0.84087 0.83941 0.83980 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.04 8.78 127.77 1.12 3.16 16 2 N -0.49 -23.85 2.59 -658.88 -1.70 -25.55 16 3 C -0.34 -20.47 9.37 84.04 0.79 -19.69 16 4 H 0.04 2.85 7.90 -2.91 -0.02 2.82 16 5 C 0.01 0.39 5.29 84.93 0.45 0.84 16 6 N -0.91 -55.36 13.96 21.66 0.30 -55.06 16 7 Si 0.96 42.16 24.96 68.60 1.71 43.87 16 8 H -0.24 -8.95 6.69 99.48 0.67 -8.29 16 9 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 10 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 11 C 0.45 21.02 7.63 87.66 0.67 21.69 16 12 O -0.62 -35.25 15.85 -3.06 -0.05 -35.29 16 13 C -0.12 -3.57 4.30 29.85 0.13 -3.44 16 14 C -0.07 -2.07 4.95 29.85 0.15 -1.92 16 15 C -0.13 -2.79 8.94 24.53 0.22 -2.57 16 16 C -0.13 -2.99 9.52 23.65 0.23 -2.77 16 17 C -0.07 -1.40 5.87 -20.12 -0.12 -1.52 16 18 C -0.13 -2.39 9.79 22.52 0.22 -2.17 16 19 C -0.13 -1.96 10.03 22.23 0.22 -1.74 16 20 C -0.13 -1.88 10.04 22.32 0.22 -1.66 16 21 C -0.13 -1.92 10.03 22.23 0.22 -1.70 16 22 C -0.13 -2.38 9.40 22.52 0.21 -2.17 16 23 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 24 H 0.05 2.06 3.42 -2.39 -0.01 2.05 16 25 H 0.10 2.67 6.64 -2.38 -0.02 2.65 16 26 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 27 H 0.11 2.78 7.41 -2.39 -0.02 2.76 16 28 H 0.11 2.78 8.11 -2.38 -0.02 2.77 16 29 H 0.07 2.14 8.10 -2.39 -0.02 2.12 16 30 H 0.06 1.83 7.77 -2.38 -0.02 1.81 16 31 H 0.13 2.38 6.04 -2.91 -0.02 2.37 16 32 H 0.12 2.57 7.87 -2.91 -0.02 2.54 16 33 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 34 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 37 H 0.13 2.06 6.17 -2.91 -0.02 2.04 16 Total: -1.00 -77.13 310.31 6.01 -71.12 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 1.02 Total: 16.57 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 4.73 Total: -15.65 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -1.40 Total: -80.61 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -0.05 Total: -35.29 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.71 Total: 43.87 kcal Total: -77.13 6.01 -71.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265608963.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.704 kcal (2) G-P(sol) polarization free energy of solvation -77.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds