Wall clock time and date at job start Mon Mar 30 2020 07:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99618 * 2 1 4 4 H 1.48495 * 109.46881 * 270.00280 * 3 2 1 5 5 H 1.48495 * 109.47060 * 30.00354 * 3 2 1 6 6 H 1.48499 * 109.46572 * 150.00523 * 3 2 1 7 7 C 1.37874 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00250 * 359.97438 * 7 2 1 9 9 C 1.50711 * 119.99584 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46712 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46798 * 179.97438 * 10 9 7 12 12 C 1.46908 * 110.99607 * 179.97438 * 11 10 9 13 13 H 1.08992 * 110.43825 * 323.91441 * 12 11 10 14 14 C 1.54894 * 110.48486 * 86.45874 * 12 11 10 15 15 C 1.54885 * 102.74838 * 156.61646 * 14 12 11 16 16 C 1.54269 * 104.19540 * 322.05576 * 15 14 12 17 17 H 1.09000 * 110.03220 * 264.27580 * 16 15 14 18 18 C 1.50706 * 110.02906 * 142.89433 * 16 15 14 19 19 C 1.38230 * 119.99987 * 301.17850 * 18 16 15 20 20 C 1.38240 * 119.99655 * 179.77004 * 19 18 16 21 21 C 1.38232 * 120.00157 * 0.50230 * 20 19 18 22 22 C 1.38235 * 119.99949 * 359.75296 * 21 20 19 23 23 C 1.38234 * 119.99897 * 359.97438 * 22 21 20 24 24 C 1.53869 * 106.60151 * 23.61107 * 16 15 14 25 25 H 0.97002 * 120.00594 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47019 * 60.00062 * 9 7 2 27 27 H 1.08993 * 109.46885 * 299.99673 * 9 7 2 28 28 H 1.09005 * 109.47261 * 60.00111 * 10 9 7 29 29 H 1.09001 * 109.47204 * 300.00215 * 10 9 7 30 30 H 1.00897 * 111.00198 * 303.95226 * 11 10 9 31 31 H 1.08999 * 110.75547 * 38.30021 * 14 12 11 32 32 H 1.09001 * 110.75330 * 274.93442 * 14 12 11 33 33 H 1.08996 * 110.48454 * 203.37435 * 15 14 12 34 34 H 1.09004 * 110.48778 * 80.73349 * 15 14 12 35 35 H 1.08001 * 120.00383 * 0.02562 * 19 18 16 36 36 H 1.08001 * 119.99759 * 180.23037 * 20 19 18 37 37 H 1.08001 * 120.00240 * 179.72262 * 21 20 19 38 38 H 1.07999 * 120.00481 * 179.97438 * 22 21 20 39 39 H 1.08003 * 120.00400 * 179.97438 * 23 22 21 40 40 H 1.08998 * 110.03412 * 119.28204 * 24 16 15 41 41 H 1.08994 * 110.03427 * 240.71939 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 7 5.4906 -2.6363 -0.0022 12 6 6.0171 -4.0078 -0.0015 13 1 5.3834 -4.6584 0.6011 14 6 6.1265 -4.5472 -1.4494 15 6 7.2031 -5.6533 -1.3216 16 6 8.2227 -5.0748 -0.3187 17 1 9.0461 -4.6021 -0.8541 18 6 8.7484 -6.1703 0.5728 19 6 7.8753 -6.9054 1.3527 20 6 8.3571 -7.9134 2.1668 21 6 9.7129 -8.1795 2.2088 22 6 10.5865 -7.4409 1.4328 23 6 10.1042 -6.4366 0.6144 24 6 7.4686 -4.0286 0.5206 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8745 -0.6799 -0.8911 28 1 3.6579 -3.1505 -0.8908 29 1 3.6586 -3.1500 0.8892 30 1 5.8516 -2.1105 -0.7840 31 1 6.4575 -3.7627 -2.1298 32 1 5.1763 -4.9689 -1.7773 33 1 7.6779 -5.8366 -2.2854 34 1 6.7629 -6.5710 -0.9315 35 1 6.8165 -6.6949 1.3230 36 1 7.6746 -8.4902 2.7734 37 1 10.0898 -8.9640 2.8482 38 1 11.6459 -7.6484 1.4658 39 1 10.7867 -5.8592 0.0084 40 1 7.4829 -4.3132 1.5727 41 1 7.9255 -3.0474 0.3925 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275437865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:43 Heat of formation + Delta-G solvation = 0.878076 kcal Electronic energy + Delta-G solvation = -18518.234178 eV Core-core repulsion = 15782.480678 eV Total energy + Delta-G solvation = -2735.753500 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.98973 -38.01759 -35.03516 -32.80979 -31.40668 -31.01694 -29.66626 -28.23192 -26.40660 -23.61857 -22.85615 -22.23740 -20.64283 -20.27448 -19.46888 -17.13083 -16.77319 -15.85037 -15.62551 -14.95351 -14.77082 -14.29840 -14.03713 -13.57079 -13.44869 -13.35145 -13.04650 -12.92259 -12.39965 -12.08172 -11.95791 -11.57602 -11.34186 -11.30034 -11.17769 -10.95966 -10.78922 -10.68249 -10.45698 -10.04729 -9.84701 -9.67016 -9.21255 -9.06933 -8.78596 -8.52327 -7.84761 -6.03084 -4.01354 1.20875 1.24594 3.33176 3.40687 3.46988 3.61694 4.47022 4.47706 4.52504 4.55574 4.82061 4.83545 4.87600 4.99510 5.24656 5.31126 5.31910 5.36808 5.47090 5.49809 5.56558 5.64997 5.72241 5.82427 5.89859 5.93109 6.00519 6.17827 6.21651 6.25456 6.27836 6.34852 6.37825 6.40018 6.55506 6.79573 6.85773 7.18097 7.40614 7.66002 7.78934 7.94313 8.54728 9.01057 9.59457 11.10301 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.042022 B = 0.003259 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.150912 B = 8589.775465 C = 8679.832506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.074 3.926 11 N -0.688 5.688 12 C 0.085 3.915 13 H 0.079 0.921 14 C -0.156 4.156 15 C -0.112 4.112 16 C -0.056 4.056 17 H 0.077 0.923 18 C -0.067 4.067 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.130 4.130 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.106 4.106 25 H 0.263 0.737 26 H 0.025 0.975 27 H 0.008 0.992 28 H 0.022 0.978 29 H 0.063 0.937 30 H 0.336 0.664 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.067 0.933 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.122 -14.903 0.355 25.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.054 4.054 11 N -0.317 5.317 12 C -0.026 4.026 13 H 0.097 0.903 14 C -0.196 4.196 15 C -0.150 4.150 16 C -0.075 4.075 17 H 0.096 0.904 18 C -0.067 4.067 19 C -0.131 4.131 20 C -0.137 4.137 21 C -0.148 4.148 22 C -0.139 4.139 23 C -0.139 4.139 24 C -0.144 4.144 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.026 0.974 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.154 0.846 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.086 0.914 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 20.996 -14.694 1.060 25.648 hybrid contribution 0.139 0.570 -0.933 1.102 sum 21.135 -14.124 0.127 25.420 Atomic orbital electron populations 1.69916 1.06333 1.26911 1.51215 1.25013 0.94731 0.99227 0.94496 0.86743 0.80514 0.83423 0.78438 1.20415 1.21451 1.18737 1.21083 0.89439 0.94487 1.50920 0.91149 1.19551 0.96630 0.91977 0.96660 1.21961 0.84180 0.99905 0.99382 1.60631 1.09858 1.11802 1.49458 1.22429 0.95344 0.90540 0.94264 0.90265 1.23263 0.98883 0.98641 0.98766 1.22392 0.95811 0.98367 0.98399 1.20850 0.98115 0.93618 0.94942 0.90411 1.19960 0.93301 0.96520 0.96880 1.21066 0.99962 0.95689 0.96402 1.21167 0.95589 0.97892 0.99034 1.21117 0.93660 1.00150 0.99879 1.21114 0.99517 0.96275 0.96986 1.21087 0.94949 0.98262 0.99631 1.22245 0.94690 0.98302 0.99140 0.92743 0.95705 0.97352 0.96008 0.91860 0.84648 0.91338 0.91451 0.91810 0.91304 0.85883 0.86173 0.86402 0.86351 0.86282 0.91418 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 10 C 0.07 1.49 5.47 -3.82 -0.02 1.47 16 11 N -0.69 -11.48 6.27 -104.96 -0.66 -12.13 16 12 C 0.09 1.15 3.16 -66.04 -0.21 0.94 16 13 H 0.08 1.12 7.87 -51.93 -0.41 0.71 16 14 C -0.16 -1.87 6.41 -24.74 -0.16 -2.03 16 15 C -0.11 -1.14 6.27 -25.07 -0.16 -1.30 16 16 C -0.06 -0.57 3.13 -90.65 -0.28 -0.86 16 17 H 0.08 0.73 7.91 -51.93 -0.41 0.32 16 18 C -0.07 -0.69 4.69 -104.62 -0.49 -1.18 16 19 C -0.11 -1.17 8.07 -39.58 -0.32 -1.49 16 20 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 21 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 22 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 23 C -0.12 -1.16 9.68 -39.58 -0.38 -1.54 16 24 C -0.11 -1.26 5.96 -25.61 -0.15 -1.41 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 27 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 28 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.06 1.31 8.08 -51.93 -0.42 0.90 16 30 H 0.34 5.31 8.30 -39.29 -0.33 4.98 16 31 H 0.07 0.81 7.83 -51.93 -0.41 0.41 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.70 6.97 -51.93 -0.36 0.34 16 35 H 0.12 1.25 7.82 -52.49 -0.41 0.83 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.12 0.95 7.96 -52.48 -0.42 0.53 16 40 H 0.07 0.84 7.25 -51.93 -0.38 0.46 16 41 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 LS Contribution 328.56 15.07 4.95 4.95 Total: -1.00 -30.90 328.56 -10.37 -41.27 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.84 Total: 1.78 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: -3.92 Total: -25.82 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.12 Total: -39.58 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.90 -10.37 -41.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275437865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.150 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds