Wall clock time and date at job start Mon Mar 30 2020 07:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99618 * 2 1 4 4 H 1.48495 * 109.46881 * 270.00280 * 3 2 1 5 5 H 1.48495 * 109.47060 * 30.00354 * 3 2 1 6 6 H 1.48499 * 109.46572 * 150.00523 * 3 2 1 7 7 C 1.37874 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00250 * 359.97438 * 7 2 1 9 9 C 1.50711 * 119.99584 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46712 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46798 * 179.97438 * 10 9 7 12 12 C 1.46908 * 110.99607 * 179.97438 * 11 10 9 13 13 H 1.08992 * 110.43825 * 323.91441 * 12 11 10 14 14 C 1.54894 * 110.48486 * 86.45874 * 12 11 10 15 15 C 1.54885 * 102.74838 * 156.61646 * 14 12 11 16 16 C 1.54269 * 104.19540 * 322.05576 * 15 14 12 17 17 H 1.09000 * 110.03220 * 264.27580 * 16 15 14 18 18 C 1.50706 * 110.02906 * 142.89433 * 16 15 14 19 19 C 1.38230 * 119.99987 * 301.17850 * 18 16 15 20 20 C 1.38240 * 119.99655 * 179.77004 * 19 18 16 21 21 C 1.38232 * 120.00157 * 0.50230 * 20 19 18 22 22 C 1.38235 * 119.99949 * 359.75296 * 21 20 19 23 23 C 1.38234 * 119.99897 * 359.97438 * 22 21 20 24 24 C 1.53869 * 106.60151 * 23.61107 * 16 15 14 25 25 H 0.97002 * 120.00594 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47019 * 60.00062 * 9 7 2 27 27 H 1.08993 * 109.46885 * 299.99673 * 9 7 2 28 28 H 1.09005 * 109.47261 * 60.00111 * 10 9 7 29 29 H 1.09001 * 109.47204 * 300.00215 * 10 9 7 30 30 H 1.00897 * 111.00198 * 303.95226 * 11 10 9 31 31 H 1.08999 * 110.75547 * 38.30021 * 14 12 11 32 32 H 1.09001 * 110.75330 * 274.93442 * 14 12 11 33 33 H 1.08996 * 110.48454 * 203.37435 * 15 14 12 34 34 H 1.09004 * 110.48778 * 80.73349 * 15 14 12 35 35 H 1.08001 * 120.00383 * 0.02562 * 19 18 16 36 36 H 1.08001 * 119.99759 * 180.23037 * 20 19 18 37 37 H 1.08001 * 120.00240 * 179.72262 * 21 20 19 38 38 H 1.07999 * 120.00481 * 179.97438 * 22 21 20 39 39 H 1.08003 * 120.00400 * 179.97438 * 23 22 21 40 40 H 1.08998 * 110.03412 * 119.28204 * 24 16 15 41 41 H 1.08994 * 110.03427 * 240.71939 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 7 5.4906 -2.6363 -0.0022 12 6 6.0171 -4.0078 -0.0015 13 1 5.3834 -4.6584 0.6011 14 6 6.1265 -4.5472 -1.4494 15 6 7.2031 -5.6533 -1.3216 16 6 8.2227 -5.0748 -0.3187 17 1 9.0461 -4.6021 -0.8541 18 6 8.7484 -6.1703 0.5728 19 6 7.8753 -6.9054 1.3527 20 6 8.3571 -7.9134 2.1668 21 6 9.7129 -8.1795 2.2088 22 6 10.5865 -7.4409 1.4328 23 6 10.1042 -6.4366 0.6144 24 6 7.4686 -4.0286 0.5206 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8745 -0.6799 -0.8911 28 1 3.6579 -3.1505 -0.8908 29 1 3.6586 -3.1500 0.8892 30 1 5.8516 -2.1105 -0.7840 31 1 6.4575 -3.7627 -2.1298 32 1 5.1763 -4.9689 -1.7773 33 1 7.6779 -5.8366 -2.2854 34 1 6.7629 -6.5710 -0.9315 35 1 6.8165 -6.6949 1.3230 36 1 7.6746 -8.4902 2.7734 37 1 10.0898 -8.9640 2.8482 38 1 11.6459 -7.6484 1.4658 39 1 10.7867 -5.8592 0.0084 40 1 7.4829 -4.3132 1.5727 41 1 7.9255 -3.0474 0.3925 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275437865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:42 Heat of formation + Delta-G solvation = -16.405962 kcal Electronic energy + Delta-G solvation = -18518.983670 eV Core-core repulsion = 15782.480678 eV Total energy + Delta-G solvation = -2736.502992 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.79342 -38.97895 -36.48997 -34.74756 -32.62286 -31.73148 -31.11894 -29.24011 -27.63909 -25.36183 -23.58645 -22.99942 -22.32363 -21.46348 -20.37180 -18.98119 -17.83514 -16.90789 -16.60060 -16.28051 -15.95019 -15.68170 -15.35103 -14.88212 -14.57984 -14.28168 -14.19397 -13.91916 -13.86796 -13.53329 -13.05243 -13.01823 -12.69304 -12.49868 -12.14460 -12.00792 -11.90524 -11.78322 -11.72459 -11.56219 -11.42996 -11.40039 -11.29102 -10.77380 -9.76657 -9.51968 -9.21065 -8.30522 -6.35299 0.50173 0.54850 1.36383 1.39231 1.52465 2.36722 2.89752 3.05067 3.31167 3.65412 3.69988 3.88451 4.11100 4.19759 4.28149 4.32681 4.43666 4.50568 4.54402 4.58304 4.61996 4.67563 4.70425 4.74491 4.88108 4.95379 4.99984 5.06302 5.16836 5.19587 5.23878 5.31212 5.36556 5.41752 5.50486 5.63595 5.65109 5.67709 5.81527 6.17326 6.20743 6.26709 6.57794 6.73987 7.29767 8.86270 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.042022 B = 0.003259 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.150912 B = 8589.775465 C = 8679.832506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.248 1.248 7 C -0.535 4.535 8 H 0.030 0.970 9 C -0.004 4.004 10 C 0.089 3.911 11 N -0.688 5.688 12 C 0.082 3.918 13 H 0.068 0.932 14 C -0.152 4.152 15 C -0.105 4.105 16 C -0.048 4.048 17 H 0.091 0.909 18 C -0.079 4.079 19 C -0.130 4.130 20 C -0.131 4.131 21 C -0.135 4.135 22 C -0.126 4.126 23 C -0.129 4.129 24 C -0.097 4.097 25 H 0.267 0.733 26 H 0.021 0.979 27 H 0.019 0.981 28 H 0.017 0.983 29 H 0.051 0.949 30 H 0.343 0.657 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.116 0.884 36 H 0.132 0.868 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.135 0.865 40 H 0.059 0.941 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.107 -14.679 0.035 28.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.042 4.042 10 C -0.040 4.040 11 N -0.318 5.318 12 C -0.028 4.028 13 H 0.086 0.914 14 C -0.191 4.191 15 C -0.143 4.143 16 C -0.066 4.066 17 H 0.110 0.890 18 C -0.079 4.079 19 C -0.148 4.148 20 C -0.149 4.149 21 C -0.153 4.153 22 C -0.144 4.144 23 C -0.147 4.147 24 C -0.135 4.135 25 H 0.076 0.924 26 H 0.040 0.960 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.162 0.838 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.134 0.866 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.153 0.847 40 H 0.078 0.922 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 24.002 -14.493 0.735 28.048 hybrid contribution -0.826 0.384 -0.800 1.212 sum 23.176 -14.110 -0.064 27.133 Atomic orbital electron populations 1.70068 1.08340 1.28264 1.52558 1.26026 0.95642 1.03643 0.93946 0.85579 0.79414 0.77906 0.79257 1.18955 1.20979 1.17125 1.21426 0.92029 0.93177 1.50703 0.95121 1.19436 0.93467 0.94549 0.96736 1.21606 0.86609 0.97190 0.98637 1.60547 1.07270 1.13970 1.50034 1.22490 0.96117 0.88674 0.95557 0.91382 1.23188 0.99179 0.99335 0.97410 1.22344 0.95220 0.97493 0.99196 1.20773 0.98144 0.93135 0.94592 0.89019 1.20012 0.93852 0.96790 0.97272 1.21150 0.99856 0.96511 0.97256 1.21404 0.96443 0.97891 0.99120 1.21435 0.93393 1.00531 0.99954 1.21447 1.00765 0.95770 0.96381 1.21342 0.94804 0.98637 0.99933 1.22143 0.93447 0.98960 0.98986 0.92419 0.96017 0.96247 0.96483 0.93090 0.83782 0.90773 0.92437 0.90346 0.91568 0.86558 0.85048 0.84376 0.84137 0.84709 0.92179 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 2 C 0.00 0.25 5.47 84.65 0.46 0.71 16 3 Si 0.96 45.11 27.47 68.60 1.88 47.00 16 4 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 7 C -0.53 -31.63 9.66 25.60 0.25 -31.38 16 8 H 0.03 1.99 7.99 -2.91 -0.02 1.96 16 9 C 0.00 -0.20 4.30 29.85 0.13 -0.07 16 10 C 0.09 3.60 5.47 86.30 0.47 4.07 16 11 N -0.69 -22.31 6.27 -486.00 -3.05 -25.36 16 12 C 0.08 2.17 3.16 45.99 0.15 2.31 16 13 H 0.07 1.95 7.87 -2.39 -0.02 1.94 16 14 C -0.15 -3.46 6.41 31.89 0.20 -3.26 16 15 C -0.10 -1.96 6.27 31.67 0.20 -1.76 16 16 C -0.05 -0.88 3.13 -10.81 -0.03 -0.92 16 17 H 0.09 1.47 7.91 -2.39 -0.02 1.45 16 18 C -0.08 -1.52 4.69 -19.86 -0.09 -1.61 16 19 C -0.13 -2.61 8.07 22.27 0.18 -2.43 16 20 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 21 C -0.14 -2.12 10.05 22.27 0.22 -1.90 16 22 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 23 C -0.13 -2.17 9.68 22.27 0.22 -1.95 16 24 C -0.10 -2.19 5.96 31.32 0.19 -2.00 16 25 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 26 H 0.02 1.05 7.20 -2.39 -0.02 1.04 16 27 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 28 H 0.02 0.70 8.12 -2.38 -0.02 0.68 16 29 H 0.05 2.17 8.08 -2.39 -0.02 2.15 16 30 H 0.34 10.26 8.30 -89.70 -0.74 9.52 16 31 H 0.07 1.62 7.83 -2.39 -0.02 1.60 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.29 6.97 -2.39 -0.02 1.27 16 35 H 0.12 2.39 7.82 -2.91 -0.02 2.36 16 36 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 39 H 0.14 1.75 7.96 -2.91 -0.02 1.73 16 40 H 0.06 1.45 7.25 -2.39 -0.02 1.43 16 41 H 0.07 1.66 8.04 -2.39 -0.02 1.64 16 Total: -1.00 -66.83 328.56 2.31 -64.52 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.19 Total: 18.16 kcal Atomic # 6 Polarization: -46.96 SS G_CDS: 2.99 Total: -43.97 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -2.75 Total: -85.71 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 47.00 kcal Total: -66.83 2.31 -64.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275437865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.114 kcal (2) G-P(sol) polarization free energy of solvation -66.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds