Wall clock time and date at job start Mon Mar 30 2020 07:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50704 * 119.99668 * 2 1 4 4 N 1.46498 * 109.46935 * 125.00213 * 3 2 1 5 5 C 1.46497 * 120.00068 * 269.99730 * 4 3 2 6 6 C 1.50701 * 109.47348 * 270.00208 * 5 4 3 7 7 H 1.08002 * 119.99613 * 359.97438 * 6 5 4 8 8 C 1.37868 * 120.00270 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00321 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00022 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46803 * 90.00093 * 10 8 6 12 12 H 1.48497 * 109.47001 * 209.99805 * 10 8 6 13 13 H 1.48499 * 109.47121 * 329.99816 * 10 8 6 14 14 C 1.38541 * 120.00116 * 89.99895 * 4 3 2 15 15 C 1.39666 * 120.53283 * 184.97754 * 14 4 3 16 16 C 1.38081 * 118.33165 * 180.02562 * 15 14 4 17 17 N 1.32570 * 119.20099 * 359.75414 * 16 15 14 18 18 C 1.31769 * 121.01433 * 0.50366 * 17 16 15 19 19 C 1.50692 * 119.08234 * 179.75881 * 18 17 16 20 20 C 1.53000 * 117.50104 * 59.73133 * 19 18 17 21 21 C 1.53002 * 60.02940 * 252.47218 * 20 19 18 22 22 N 1.31772 * 121.82739 * 359.48075 * 18 17 16 23 23 H 1.07993 * 119.99802 * 180.02562 * 1 2 3 24 24 H 1.07997 * 119.99958 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.99958 * 180.02562 * 2 1 3 26 26 H 1.08995 * 109.47479 * 5.00293 * 3 2 1 27 27 H 1.09000 * 109.46960 * 244.99872 * 3 2 1 28 28 H 1.09003 * 109.47219 * 29.99783 * 5 4 3 29 29 H 1.09003 * 109.47690 * 149.99862 * 5 4 3 30 30 H 0.97002 * 120.00617 * 179.97438 * 9 8 6 31 31 H 1.07998 * 120.83190 * 0.04153 * 15 14 4 32 32 H 1.07999 * 120.39590 * 180.02562 * 16 15 14 33 33 H 1.09008 * 115.54779 * 205.39747 * 19 18 17 34 34 H 1.09002 * 117.49833 * 359.97323 * 20 19 18 35 35 H 1.09002 * 117.49953 * 144.97364 * 20 19 18 36 36 H 1.09000 * 117.49996 * 107.50493 * 21 20 19 37 37 H 1.08999 * 117.49664 * 252.51862 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5589 1.8650 2.4248 6 6 2.8443 3.3437 2.4804 7 1 3.3040 3.8370 1.6368 8 6 2.5185 4.0667 3.6082 9 7 1.9582 3.4662 4.6353 10 14 2.8728 5.8996 3.6773 11 1 1.7006 6.6501 3.1599 12 1 3.1361 6.3001 5.0828 13 1 4.0635 6.2053 2.8441 14 6 4.2848 0.8533 0.9782 15 6 5.1481 0.7773 2.0735 16 6 6.4251 0.2936 1.8691 17 7 6.7861 -0.0847 0.6508 18 6 5.9497 0.0040 -0.3634 19 6 6.4076 -0.4333 -1.7309 20 6 6.8534 -1.8876 -1.8951 21 6 7.8916 -0.7639 -1.9080 22 7 4.7221 0.4593 -0.2141 23 1 -0.5399 -0.9353 0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3586 2.1317 0.0896 27 1 2.6213 1.4027 -0.9314 28 1 1.4888 1.6967 2.5459 29 1 3.0990 1.3604 3.2260 30 1 1.7293 3.9748 5.4289 31 1 4.8247 1.0888 3.0557 32 1 7.1200 0.2201 2.6926 33 1 5.8922 0.0330 -2.5706 34 1 6.8159 -2.5281 -1.0139 35 1 6.6310 -2.3783 -2.8427 36 1 8.5372 -0.6650 -1.0354 37 1 8.3520 -0.5150 -2.8642 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291931633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:18 Heat of formation + Delta-G solvation = 100.048869 kcal Electronic energy + Delta-G solvation = -18852.924239 eV Core-core repulsion = 16017.930764 eV Total energy + Delta-G solvation = -2834.993475 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.39996 -37.43546 -36.26454 -33.54106 -32.99602 -32.07404 -30.13377 -27.75492 -25.44797 -24.62705 -23.15981 -22.24564 -21.93195 -20.03848 -19.34985 -17.16197 -16.78613 -16.53487 -15.46665 -14.94332 -14.66190 -14.57227 -14.23966 -14.16538 -13.58146 -13.25955 -12.92078 -12.44184 -11.94281 -11.56783 -11.43663 -11.39253 -11.13954 -10.94056 -10.81495 -10.65689 -10.42818 -10.35778 -10.29742 -9.92298 -9.67537 -9.10409 -8.90773 -8.61201 -8.51282 -7.11052 -6.19660 -4.29143 1.65342 2.04227 2.54379 3.20700 3.27908 3.32065 3.71882 3.91272 4.29374 4.38803 4.57850 4.78944 5.03613 5.11626 5.21638 5.30504 5.33216 5.49149 5.56237 5.70026 5.82778 5.90324 5.90750 6.14983 6.15819 6.22960 6.30102 6.33968 6.36585 6.85895 6.90245 6.97710 7.05656 7.13980 7.48386 7.72963 8.00595 8.11817 8.17024 8.76023 8.94021 9.38442 10.85043 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.018848 B = 0.006023 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.173769 B = 4647.487665 C = 5584.714680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.153 4.153 3 C 0.150 3.850 4 N -0.569 5.569 5 C 0.250 3.750 6 C -0.537 4.537 7 H 0.060 0.940 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.898 3.102 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.449 3.551 15 C -0.282 4.282 16 C 0.161 3.839 17 N -0.579 5.579 18 C 0.377 3.623 19 C -0.091 4.091 20 C -0.159 4.159 21 C -0.156 4.156 22 N -0.585 5.585 23 H 0.092 0.908 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.266 0.734 31 H 0.148 0.852 32 H 0.156 0.844 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.732 -7.777 -9.028 12.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.173 4.173 3 C 0.027 3.973 4 N -0.276 5.276 5 C 0.131 3.869 6 C -0.576 4.576 7 H 0.078 0.922 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.726 3.274 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.204 3.796 15 C -0.310 4.310 16 C 0.002 3.998 17 N -0.300 5.300 18 C 0.107 3.893 19 C -0.111 4.111 20 C -0.198 4.198 21 C -0.193 4.193 22 N -0.311 5.311 23 H 0.110 0.890 24 H 0.115 0.885 25 H 0.119 0.881 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.166 0.834 32 H 0.173 0.827 33 H 0.139 0.861 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.705 -7.899 -9.598 13.291 hybrid contribution -0.343 1.385 1.156 1.836 sum 4.363 -6.515 -8.442 11.521 Atomic orbital electron populations 1.23765 0.95798 1.01525 1.02031 1.23404 0.96012 0.99318 0.98546 1.20454 0.92015 0.94489 0.90380 1.47131 1.06628 1.60278 1.13558 1.19463 0.96147 0.93661 0.77671 1.21494 1.41376 0.93235 1.01479 0.92166 1.24929 0.94703 0.98890 0.95234 1.69921 1.41409 1.36426 1.05257 0.86486 0.78829 0.84728 0.77401 1.20467 1.20964 1.19815 1.18572 0.86461 0.86135 0.88395 1.22333 0.96432 1.10877 1.01356 1.22650 0.93384 0.89912 0.93860 1.67964 1.37431 1.24444 1.00128 1.21508 0.84707 0.89779 0.93314 1.20521 0.98484 0.99518 0.92621 1.22913 1.03412 0.90443 1.03001 1.22973 0.91138 1.01825 1.03409 1.67577 1.17634 1.21384 1.24475 0.88958 0.88454 0.88065 0.90085 0.89615 0.94205 0.94304 0.92456 0.83391 0.82656 0.86063 0.88757 0.88530 0.87232 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.81 14.32 29.01 0.42 -2.39 16 2 C -0.15 -2.53 9.85 -36.03 -0.35 -2.88 16 3 C 0.15 2.78 5.92 -5.19 -0.03 2.75 16 4 N -0.57 -12.12 2.54 -176.40 -0.45 -12.56 16 5 C 0.25 6.04 5.03 -5.19 -0.03 6.01 16 6 C -0.54 -14.21 9.39 -34.44 -0.32 -14.54 16 7 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 8 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -24.72 13.29 55.43 0.74 -23.98 16 10 Si 0.90 20.82 29.54 -169.99 -5.02 15.79 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 14 C 0.45 9.42 7.39 -154.78 -1.14 8.27 16 15 C -0.28 -5.61 9.33 -39.11 -0.36 -5.98 16 16 C 0.16 2.82 11.29 -17.29 -0.20 2.63 16 17 N -0.58 -10.34 9.35 -10.81 -0.10 -10.44 16 18 C 0.38 6.79 7.31 -157.24 -1.15 5.64 16 19 C -0.09 -1.29 6.24 -91.74 -0.57 -1.87 16 20 C -0.16 -1.86 10.23 -26.73 -0.27 -2.13 16 21 C -0.16 -1.82 10.01 -26.69 -0.27 -2.09 16 22 N -0.59 -11.56 9.13 -9.96 -0.09 -11.65 16 23 H 0.09 1.17 8.06 -52.49 -0.42 0.74 16 24 H 0.10 1.37 7.84 -52.49 -0.41 0.96 16 25 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 26 H 0.08 1.51 7.72 -51.93 -0.40 1.11 16 27 H 0.09 1.56 7.33 -51.93 -0.38 1.18 16 28 H 0.04 1.01 8.07 -51.93 -0.42 0.59 16 29 H 0.04 0.98 6.05 -51.93 -0.31 0.67 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.15 3.06 6.16 -52.49 -0.32 2.73 16 32 H 0.16 2.18 8.06 -52.49 -0.42 1.75 16 33 H 0.12 1.61 8.14 -51.92 -0.42 1.19 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.11 1.41 7.55 -51.93 -0.39 1.01 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 320.50 15.07 4.83 4.83 Total: -1.00 -28.54 320.50 -9.62 -38.17 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.15 Total: 4.76 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -4.38 Total: -4.92 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: 0.10 Total: -58.64 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.54 -9.62 -38.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291931633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.214 kcal (2) G-P(sol) polarization free energy of solvation -28.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds