Wall clock time and date at job start Mon Mar 30 2020 06:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39590 * 120.11070 * 6.60387 * 3 2 1 5 5 C 1.37993 * 120.00719 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.22360 * 0.02562 * 5 4 3 7 7 C 1.38986 * 120.20985 * 0.02562 * 6 5 4 8 8 N 1.39698 * 120.00070 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99450 * 179.97438 * 8 7 6 10 10 C 1.46493 * 120.00222 * 359.96926 * 8 7 6 11 11 C 1.52998 * 109.46955 * 90.00288 * 10 8 7 12 12 O 1.42908 * 109.47043 * 65.00199 * 11 10 8 13 13 C 1.42897 * 113.99934 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47247 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99476 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00487 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00375 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 119.99824 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47156 * 90.00047 * 18 16 14 20 20 H 1.48497 * 109.46935 * 210.00097 * 18 16 14 21 21 H 1.48495 * 109.46953 * 330.00061 * 18 16 14 22 22 C 1.38676 * 119.99038 * 359.97438 * 7 6 5 23 23 H 4.52053 * 14.03172 * 359.97438 * 4 2 1 24 24 H 1.08007 * 119.99193 * 359.95398 * 4 3 2 25 25 H 1.08005 * 119.88806 * 180.02562 * 5 4 3 26 26 H 1.08001 * 119.89017 * 179.97438 * 6 5 4 27 27 H 1.09004 * 109.47283 * 89.99470 * 9 8 7 28 28 H 1.08997 * 109.47009 * 209.99532 * 9 8 7 29 29 H 1.09001 * 109.47277 * 329.99255 * 9 8 7 30 30 H 1.09000 * 109.47152 * 210.00357 * 10 8 7 31 31 H 1.09003 * 109.47306 * 330.00632 * 10 8 7 32 32 H 1.09007 * 109.47238 * 184.99600 * 11 10 8 33 33 H 1.08998 * 109.47452 * 305.00031 * 11 10 8 34 34 H 1.09004 * 109.47108 * 299.99884 * 13 12 11 35 35 H 1.08998 * 109.47527 * 59.99661 * 13 12 11 36 36 H 0.97005 * 119.99789 * 179.97438 * 17 16 14 37 37 H 1.08005 * 120.11222 * 180.28146 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3069 -1.1986 -0.1389 5 6 4.6868 -1.1954 -0.1391 6 6 5.3800 -0.0073 -0.0016 7 6 4.6914 1.1918 0.1383 8 7 5.3963 2.3900 0.2765 9 6 4.6704 3.6540 0.4234 10 6 6.8612 2.3825 0.2745 11 6 7.3701 2.5458 -1.1591 12 8 6.9980 3.8342 -1.6528 13 6 7.4269 4.0896 -2.9918 14 6 6.9823 5.4683 -3.4073 15 1 6.4274 6.0873 -2.7179 16 6 7.2839 5.9394 -4.6674 17 7 6.8955 7.1424 -5.0301 18 14 8.2445 4.8690 -5.8596 19 1 7.2998 4.0514 -6.6622 20 1 9.0450 5.7319 -6.7649 21 1 9.1521 3.9728 -5.0992 22 6 3.3047 1.1989 0.1398 23 1 -1.0500 -0.0012 0.0004 24 1 2.7689 -2.1290 -0.2458 25 1 5.2271 -2.1243 -0.2471 26 1 6.4600 -0.0112 -0.0021 27 1 4.4912 3.8493 1.4807 28 1 5.2631 4.4647 -0.0004 29 1 3.7170 3.5886 -0.1008 30 1 7.2296 3.2056 0.8868 31 1 7.2203 1.4374 0.6820 32 1 8.4560 2.4514 -1.1722 33 1 6.9307 1.7738 -1.7908 34 1 8.5139 4.0271 -3.0433 35 1 6.9883 3.3497 -3.6612 36 1 7.1081 7.4739 -5.9166 37 1 2.7677 2.1301 0.2438 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292701964.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:33 Heat of formation + Delta-G solvation = 43.403684 kcal Electronic energy + Delta-G solvation = -18358.101697 eV Core-core repulsion = 15488.359151 eV Total energy + Delta-G solvation = -2869.742546 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.66676 -37.38769 -35.89312 -33.56374 -32.69941 -31.06224 -29.90800 -29.25340 -27.73149 -25.44478 -23.44207 -22.26524 -21.87805 -20.88979 -18.61508 -17.09262 -16.85359 -16.02816 -15.68240 -15.40405 -15.01773 -14.59506 -14.41421 -14.17368 -13.68378 -13.56316 -13.05315 -12.75197 -12.43590 -12.23452 -11.88192 -11.65140 -11.49612 -11.34114 -11.15920 -10.88404 -10.80541 -10.73434 -10.50605 -9.90002 -9.62741 -9.22983 -8.90088 -8.58590 -8.51129 -7.14628 -6.15335 -4.14639 1.02007 1.63505 2.67835 3.06147 3.22521 3.28041 3.29549 3.30506 4.09806 4.23075 4.32415 4.54488 4.91747 5.10446 5.16405 5.23253 5.30114 5.40132 5.47173 5.55964 5.62541 5.73816 5.79262 5.80608 5.86085 6.07539 6.12013 6.23285 6.33083 6.48711 6.56866 6.59659 6.86543 6.95903 7.38149 7.47642 7.55684 7.62386 7.96309 8.61496 8.94493 9.44020 10.97586 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.021989 B = 0.004348 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.057140 B = 6438.177507 C = 6687.193380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.138 4.138 3 C 0.049 3.951 4 C -0.164 4.164 5 C -0.071 4.071 6 C -0.194 4.194 7 C 0.227 3.773 8 N -0.616 5.616 9 C 0.093 3.907 10 C 0.127 3.873 11 C 0.037 3.963 12 O -0.377 6.377 13 C 0.170 3.830 14 C -0.519 4.519 15 H 0.082 0.918 16 C 0.073 3.927 17 N -0.895 5.895 18 Si 0.875 3.125 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.267 1.267 22 C -0.175 4.175 23 H 0.223 0.777 24 H 0.118 0.882 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.002 0.998 35 H -0.003 1.003 36 H 0.267 0.733 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.166 -15.670 11.909 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.138 4.138 3 C 0.048 3.952 4 C -0.184 4.184 5 C -0.090 4.090 6 C -0.216 4.216 7 C 0.123 3.877 8 N -0.324 5.324 9 C -0.050 4.050 10 C 0.004 3.996 11 C -0.042 4.042 12 O -0.296 6.296 13 C 0.095 3.905 14 C -0.557 4.557 15 H 0.100 0.900 16 C -0.129 4.129 17 N -0.533 5.533 18 Si 0.702 3.298 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.191 1.191 22 C -0.197 4.197 23 H 0.239 0.761 24 H 0.136 0.864 25 H 0.141 0.859 26 H 0.142 0.858 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.020 0.980 35 H 0.015 0.985 36 H 0.077 0.923 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.141 -15.177 11.887 19.952 hybrid contribution 0.483 -0.613 -1.079 1.331 sum -4.658 -15.790 10.808 19.694 Atomic orbital electron populations 1.24830 0.95730 1.00104 0.99975 1.20180 0.92163 1.00596 1.00875 1.15659 0.86060 0.93479 0.99971 1.20831 0.94041 0.96586 1.06922 1.20741 0.93600 0.97340 0.97317 1.20794 0.99855 0.91317 1.09659 1.17727 0.90745 0.86379 0.92866 1.46444 1.04665 1.04016 1.77308 1.21723 0.97684 0.85787 0.99802 1.21540 0.79572 1.02462 0.96068 1.22883 0.97831 0.88370 0.95160 1.87876 1.78991 1.30732 1.31978 1.20583 0.93616 0.97176 0.79124 1.20860 1.36524 0.98239 1.00078 0.90037 1.24756 0.95520 0.95030 0.97574 1.69872 1.46265 1.16824 1.20352 0.86858 0.80687 0.80793 0.81464 1.19916 1.20730 1.19140 1.20683 0.92122 0.97647 1.09290 0.76057 0.86386 0.85884 0.85827 0.93971 0.89376 0.91757 0.89835 0.89801 0.93629 0.94024 0.98045 0.98550 0.92333 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.01 19.25 29.55 0.57 -1.44 16 2 C -0.14 -1.81 13.24 -38.83 -0.51 -2.33 16 3 C 0.05 0.68 5.72 -107.03 -0.61 0.07 16 4 C -0.16 -2.02 9.75 -39.17 -0.38 -2.40 16 5 C -0.07 -0.82 10.02 -39.67 -0.40 -1.22 16 6 C -0.19 -2.46 9.20 -39.31 -0.36 -2.82 16 7 C 0.23 3.26 6.55 -83.83 -0.55 2.71 16 8 N -0.62 -9.01 2.97 -179.67 -0.53 -9.54 16 9 C 0.09 1.33 10.01 59.85 0.60 1.93 16 10 C 0.13 1.71 5.56 -4.05 -0.02 1.69 16 11 C 0.04 0.61 6.28 37.16 0.23 0.85 16 12 O -0.38 -8.42 9.15 -35.23 -0.32 -8.74 16 13 C 0.17 4.30 4.76 36.01 0.17 4.47 16 14 C -0.52 -15.30 9.99 -34.44 -0.34 -15.64 16 15 H 0.08 2.61 8.06 -52.49 -0.42 2.19 16 16 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 17 N -0.89 -27.51 13.96 55.43 0.77 -26.73 16 18 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 22 C -0.17 -2.52 8.91 -38.99 -0.35 -2.86 16 23 H 0.22 1.41 7.80 -54.09 -0.42 0.99 16 24 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 25 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 26 H 0.12 1.37 6.12 -52.49 -0.32 1.05 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 1.46 7.11 -51.93 -0.37 1.09 16 29 H 0.06 0.91 6.19 -51.93 -0.32 0.59 16 30 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 31 H 0.08 0.89 6.19 -51.93 -0.32 0.57 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.00 0.05 7.20 -51.93 -0.37 -0.33 16 35 H 0.00 -0.08 7.57 -51.93 -0.39 -0.47 16 36 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.13 1.76 6.13 -52.48 -0.32 1.43 16 LS Contribution 318.31 15.07 4.80 4.80 Total: -1.00 -32.69 318.31 -6.98 -39.66 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -4.97 Total: -1.26 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -2.05 Total: -14.97 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.24 Total: -36.28 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.32 Total: -8.74 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.69 -6.98 -39.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292701964.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.068 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds