Wall clock time and date at job start Mon Mar 30 2020 06:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39590 * 120.11070 * 6.60387 * 3 2 1 5 5 C 1.37993 * 120.00719 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.22360 * 0.02562 * 5 4 3 7 7 C 1.38986 * 120.20985 * 0.02562 * 6 5 4 8 8 N 1.39698 * 120.00070 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99450 * 179.97438 * 8 7 6 10 10 C 1.46493 * 120.00222 * 359.96926 * 8 7 6 11 11 C 1.52998 * 109.46955 * 90.00288 * 10 8 7 12 12 O 1.42908 * 109.47043 * 65.00199 * 11 10 8 13 13 C 1.42897 * 113.99934 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47247 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99476 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00487 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00375 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 119.99824 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47156 * 90.00047 * 18 16 14 20 20 H 1.48497 * 109.46935 * 210.00097 * 18 16 14 21 21 H 1.48495 * 109.46953 * 330.00061 * 18 16 14 22 22 C 1.38676 * 119.99038 * 359.97438 * 7 6 5 23 23 H 4.52053 * 14.03172 * 359.97438 * 4 2 1 24 24 H 1.08007 * 119.99193 * 359.95398 * 4 3 2 25 25 H 1.08005 * 119.88806 * 180.02562 * 5 4 3 26 26 H 1.08001 * 119.89017 * 179.97438 * 6 5 4 27 27 H 1.09004 * 109.47283 * 89.99470 * 9 8 7 28 28 H 1.08997 * 109.47009 * 209.99532 * 9 8 7 29 29 H 1.09001 * 109.47277 * 329.99255 * 9 8 7 30 30 H 1.09000 * 109.47152 * 210.00357 * 10 8 7 31 31 H 1.09003 * 109.47306 * 330.00632 * 10 8 7 32 32 H 1.09007 * 109.47238 * 184.99600 * 11 10 8 33 33 H 1.08998 * 109.47452 * 305.00031 * 11 10 8 34 34 H 1.09004 * 109.47108 * 299.99884 * 13 12 11 35 35 H 1.08998 * 109.47527 * 59.99661 * 13 12 11 36 36 H 0.97005 * 119.99789 * 179.97438 * 17 16 14 37 37 H 1.08005 * 120.11222 * 180.28146 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3069 -1.1986 -0.1389 5 6 4.6868 -1.1954 -0.1391 6 6 5.3800 -0.0073 -0.0016 7 6 4.6914 1.1918 0.1383 8 7 5.3963 2.3900 0.2765 9 6 4.6704 3.6540 0.4234 10 6 6.8612 2.3825 0.2745 11 6 7.3701 2.5458 -1.1591 12 8 6.9980 3.8342 -1.6528 13 6 7.4269 4.0896 -2.9918 14 6 6.9823 5.4683 -3.4073 15 1 6.4274 6.0873 -2.7179 16 6 7.2839 5.9394 -4.6674 17 7 6.8955 7.1424 -5.0301 18 14 8.2445 4.8690 -5.8596 19 1 7.2998 4.0514 -6.6622 20 1 9.0450 5.7319 -6.7649 21 1 9.1521 3.9728 -5.0992 22 6 3.3047 1.1989 0.1398 23 1 -1.0500 -0.0012 0.0004 24 1 2.7689 -2.1290 -0.2458 25 1 5.2271 -2.1243 -0.2471 26 1 6.4600 -0.0112 -0.0021 27 1 4.4912 3.8493 1.4807 28 1 5.2631 4.4647 -0.0004 29 1 3.7170 3.5886 -0.1008 30 1 7.2296 3.2056 0.8868 31 1 7.2203 1.4374 0.6820 32 1 8.4560 2.4514 -1.1722 33 1 6.9307 1.7738 -1.7908 34 1 8.5139 4.0271 -3.0433 35 1 6.9883 3.3497 -3.6612 36 1 7.1081 7.4739 -5.9166 37 1 2.7677 2.1301 0.2438 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292701964.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:33 Heat of formation + Delta-G solvation = 23.851042 kcal Electronic energy + Delta-G solvation = -18358.949563 eV Core-core repulsion = 15488.359151 eV Total energy + Delta-G solvation = -2870.590412 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.67890 -38.84027 -37.16734 -34.89224 -34.45842 -32.25359 -30.96805 -30.47895 -29.55597 -26.63548 -24.49346 -23.96610 -23.34541 -21.90471 -19.62147 -19.03515 -18.06357 -17.26454 -17.19853 -16.54175 -16.44072 -16.09940 -15.68443 -15.45743 -14.85625 -14.72699 -14.54785 -14.24262 -13.80705 -13.64384 -13.22723 -12.97737 -12.75999 -12.62333 -12.54674 -12.41216 -12.13491 -11.93058 -11.84249 -11.42462 -11.35934 -10.95488 -10.65238 -10.36360 -9.54331 -8.39966 -8.20764 -6.47606 0.06398 0.65644 1.30716 1.33196 1.43924 1.77616 2.13072 2.22917 2.26500 2.92946 3.05200 3.14804 3.41174 3.95988 4.09978 4.16044 4.25438 4.35181 4.39073 4.48851 4.52500 4.58246 4.62578 4.66546 4.76012 4.84985 4.91659 4.99077 5.02344 5.23968 5.31229 5.41727 5.53543 5.64621 5.89320 5.94679 6.31387 6.54769 6.57326 6.60081 6.74218 7.17082 8.77042 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.021989 B = 0.004348 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.057140 B = 6438.177507 C = 6687.193380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.198 4.198 3 C 0.034 3.966 4 C -0.169 4.169 5 C -0.066 4.066 6 C -0.198 4.198 7 C 0.208 3.792 8 N -0.626 5.626 9 C 0.098 3.902 10 C 0.131 3.869 11 C 0.029 3.971 12 O -0.398 6.398 13 C 0.182 3.818 14 C -0.544 4.544 15 H 0.032 0.968 16 C 0.014 3.986 17 N -0.941 5.941 18 Si 0.953 3.047 19 H -0.264 1.264 20 H -0.272 1.272 21 H -0.245 1.245 22 C -0.197 4.197 23 H 0.262 0.738 24 H 0.135 0.865 25 H 0.157 0.843 26 H 0.143 0.857 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.121 0.879 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.013 0.987 35 H 0.000 1.000 36 H 0.273 0.727 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.355 -18.742 11.767 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.198 4.198 3 C 0.034 3.966 4 C -0.188 4.188 5 C -0.085 4.085 6 C -0.221 4.221 7 C 0.106 3.894 8 N -0.335 5.335 9 C -0.045 4.045 10 C 0.008 3.992 11 C -0.049 4.049 12 O -0.318 6.318 13 C 0.106 3.894 14 C -0.581 4.581 15 H 0.050 0.950 16 C -0.184 4.184 17 N -0.581 5.581 18 Si 0.774 3.226 19 H -0.189 1.189 20 H -0.196 1.196 21 H -0.168 1.168 22 C -0.220 4.220 23 H 0.278 0.722 24 H 0.153 0.847 25 H 0.174 0.826 26 H 0.160 0.840 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.138 0.862 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.031 0.969 35 H 0.018 0.982 36 H 0.082 0.918 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.339 -18.271 11.774 22.165 hybrid contribution 0.068 0.339 -0.947 1.008 sum -4.271 -17.932 10.828 21.378 Atomic orbital electron populations 1.25799 0.96521 0.97606 0.97261 1.20597 0.92916 1.03009 1.03253 1.15934 0.86947 0.93826 0.99926 1.21150 0.94734 0.96725 1.06237 1.21133 0.93397 0.98269 0.95668 1.21076 1.00862 0.90955 1.09167 1.17949 0.90854 0.86875 0.93737 1.46516 1.05134 1.03946 1.77942 1.21597 0.96827 0.85360 1.00716 1.21642 0.78999 1.04504 0.94048 1.23252 0.99350 0.85557 0.96784 1.87855 1.79444 1.34055 1.30424 1.20257 0.93870 0.94485 0.80780 1.21147 1.36765 1.00198 1.00023 0.94998 1.25804 0.96441 0.96536 0.99590 1.70026 1.47642 1.19053 1.21343 0.85649 0.79377 0.78989 0.78588 1.18854 1.19645 1.16795 1.20758 0.92592 0.97834 1.10788 0.72229 0.84710 0.82589 0.83974 0.91953 0.92230 0.92489 0.89468 0.86166 0.91473 0.94215 0.96907 0.98181 0.91803 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 19.25 74.32 1.43 -1.60 16 2 C -0.20 -5.12 13.24 30.02 0.40 -4.72 16 3 C 0.03 0.95 5.72 -21.42 -0.12 0.83 16 4 C -0.17 -3.91 9.75 22.54 0.22 -3.69 16 5 C -0.07 -1.36 10.02 22.21 0.22 -1.14 16 6 C -0.20 -4.62 9.20 22.45 0.21 -4.42 16 7 C 0.21 5.90 6.55 38.17 0.25 6.15 16 8 N -0.63 -18.19 2.97 -722.34 -2.15 -20.34 16 9 C 0.10 2.96 10.01 127.77 1.28 4.24 16 10 C 0.13 3.32 5.56 86.38 0.48 3.81 16 11 C 0.03 0.92 6.28 71.98 0.45 1.37 16 12 O -0.40 -17.94 9.15 -148.98 -1.36 -19.31 16 13 C 0.18 9.13 4.76 71.24 0.34 9.47 16 14 C -0.54 -33.12 9.99 25.60 0.26 -32.86 16 15 H 0.03 2.18 8.06 -2.91 -0.02 2.15 16 16 C 0.01 0.85 5.47 84.65 0.46 1.32 16 17 N -0.94 -59.40 13.96 21.44 0.30 -59.10 16 18 Si 0.95 43.66 27.47 68.60 1.88 45.54 16 19 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 22 C -0.20 -5.82 8.91 22.66 0.20 -5.61 16 23 H 0.26 2.43 7.80 -4.42 -0.03 2.40 16 24 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 25 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 26 H 0.14 2.68 6.12 -2.91 -0.02 2.66 16 27 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.06 2.11 7.11 -2.39 -0.02 2.10 16 29 H 0.06 1.75 6.19 -2.39 -0.01 1.73 16 30 H 0.09 2.15 8.07 -2.39 -0.02 2.13 16 31 H 0.12 2.18 6.19 -2.39 -0.01 2.16 16 32 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 35 H 0.00 0.02 7.57 -2.39 -0.02 0.01 16 36 H 0.27 15.81 8.31 -92.70 -0.77 15.03 16 37 H 0.12 3.50 6.13 -2.91 -0.02 3.48 16 Total: -1.00 -73.80 318.31 5.74 -68.06 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.99 Total: 12.01 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 6.08 Total: -26.87 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -1.85 Total: -79.44 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -1.36 Total: -19.31 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal Total: -73.80 5.74 -68.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292701964.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.907 kcal (2) G-P(sol) polarization free energy of solvation -73.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds