Wall clock time and date at job start Mon Mar 30 2020 07:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86795 * 120.00254 * 2 1 4 4 H 1.48504 * 109.47109 * 274.64762 * 3 2 1 5 5 H 1.48498 * 109.47466 * 34.64947 * 3 2 1 6 6 H 1.48499 * 109.47051 * 154.65426 * 3 2 1 7 7 C 1.39871 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00267 * 162.12999 * 7 2 1 9 9 C 1.41139 * 120.00090 * 342.12455 * 7 2 1 10 10 C 1.40881 * 120.15789 * 155.08443 * 9 7 2 11 11 C 1.36340 * 119.83786 * 180.02562 * 10 9 7 12 12 C 1.39567 * 120.16210 * 359.97438 * 11 10 9 13 13 N 1.38857 * 119.84507 * 179.97438 * 12 11 10 14 14 C 1.46493 * 120.00391 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47278 * 180.02562 * 14 13 12 16 16 C 1.53007 * 109.46991 * 180.02562 * 15 14 13 17 17 C 1.54263 * 110.03011 * 292.90703 * 16 15 14 18 18 C 1.54963 * 104.16003 * 217.13665 * 17 16 15 19 19 C 1.54896 * 102.77632 * 37.88766 * 18 17 16 20 20 C 1.53869 * 110.03056 * 175.69047 * 16 15 14 21 21 C 1.39569 * 120.31353 * 0.25765 * 12 11 10 22 22 C 1.36337 * 120.16260 * 359.48446 * 21 12 11 23 23 H 0.97002 * 119.99792 * 0.02562 * 1 2 3 24 24 H 1.07994 * 120.07910 * 0.02562 * 10 9 7 25 25 H 1.08004 * 119.92133 * 179.97438 * 11 10 9 26 26 H 0.97007 * 119.99606 * 0.02562 * 13 12 11 27 27 H 1.08999 * 109.46886 * 60.00013 * 14 13 12 28 28 H 1.09000 * 109.47266 * 300.00214 * 14 13 12 29 29 H 1.09003 * 109.46750 * 299.99765 * 15 14 13 30 30 H 1.08999 * 109.47275 * 60.00101 * 15 14 13 31 31 H 1.08999 * 110.01582 * 54.29599 * 16 15 14 32 32 H 1.09004 * 110.48769 * 335.78256 * 17 16 15 33 33 H 1.08999 * 110.48577 * 98.43101 * 17 16 15 34 34 H 1.08997 * 110.72408 * 279.57974 * 18 17 16 35 35 H 1.08999 * 110.92541 * 156.29462 * 18 17 16 36 36 H 1.09001 * 110.48466 * 203.40559 * 19 18 17 37 37 H 1.09008 * 110.59341 * 80.81775 * 19 18 17 38 38 H 1.09000 * 110.03226 * 238.56884 * 20 16 15 39 39 H 1.09007 * 110.03293 * 359.97438 * 20 16 15 40 40 H 1.07996 * 119.91760 * 179.71779 * 21 12 11 41 41 H 1.08000 * 120.08371 * 180.23529 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6176 0.0000 4 1 2.3923 2.1031 -1.3955 5 1 1.4932 2.6223 0.7960 6 1 3.5863 1.4136 0.5993 7 6 2.0083 -1.2114 0.0005 8 1 3.0491 -1.2341 -0.2864 9 6 1.3536 -2.4040 0.3763 10 6 1.8226 -3.6468 -0.0930 11 6 1.1849 -4.7948 0.2736 12 6 0.0705 -4.7408 1.1121 13 7 -0.5743 -5.9140 1.4809 14 6 -1.7446 -5.8614 2.3604 15 6 -2.2597 -7.2804 2.6095 16 6 -3.4825 -7.2253 3.5276 17 6 -3.0664 -6.7459 4.9335 18 6 -3.9525 -7.5774 5.8952 19 6 -3.9996 -8.9635 5.2053 20 6 -4.0759 -8.6344 3.7001 21 6 -0.4026 -3.5127 1.5769 22 6 0.2283 -2.3572 1.2227 23 1 -0.4850 0.8401 -0.0004 24 1 2.6850 -3.6901 -0.7415 25 1 1.5430 -5.7483 -0.0857 26 1 -0.2496 -6.7685 1.1562 27 1 -2.5275 -5.2679 1.8882 28 1 -1.4654 -5.4047 3.3099 29 1 -2.5389 -7.7374 1.6601 30 1 -1.4766 -7.8735 3.0819 31 1 -4.2321 -6.5529 3.1105 32 1 -2.0113 -6.9544 5.1110 33 1 -3.2707 -5.6816 5.0497 34 1 -4.9517 -7.1479 5.9675 35 1 -3.4935 -7.6520 6.8810 36 1 -4.8845 -9.5165 5.5203 37 1 -3.0965 -9.5326 5.4262 38 1 -5.1139 -8.6457 3.3676 39 1 -3.4930 -9.3575 3.1294 40 1 -1.2682 -3.4781 2.2218 41 1 -0.1366 -1.4079 1.5862 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302274312.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:29 Heat of formation + Delta-G solvation = -8.354968 kcal Electronic energy + Delta-G solvation = -18455.188401 eV Core-core repulsion = 15719.034526 eV Total energy + Delta-G solvation = -2736.153875 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.77325 -37.78354 -35.22902 -33.24791 -31.44864 -29.41683 -28.89550 -28.59294 -26.41412 -24.03374 -22.62192 -20.93494 -20.70228 -19.80236 -19.58705 -17.16644 -16.25595 -15.82990 -15.18038 -14.95879 -14.75494 -14.44303 -13.78618 -13.47544 -13.13760 -12.74589 -12.53485 -12.22188 -11.97197 -11.72808 -11.65486 -11.27254 -11.19058 -11.07567 -11.01257 -10.89069 -10.80370 -10.63357 -10.54310 -10.43996 -10.34457 -9.66513 -9.24833 -9.16894 -8.47659 -7.45289 -6.60446 -6.33745 -3.99403 2.94507 3.13835 3.17010 3.22157 3.38878 4.08281 4.27017 4.47099 4.50471 4.70394 4.80474 5.13380 5.19032 5.30309 5.37118 5.50408 5.52126 5.58753 5.67633 5.76427 5.80438 5.85244 5.90883 5.95754 6.10029 6.16354 6.22299 6.31697 6.32027 6.38278 6.41445 6.98004 6.98866 7.24251 7.39753 7.60102 7.73218 7.88751 8.19235 8.33793 8.54415 8.75821 8.84918 9.09815 9.19540 10.41125 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037676 B = 0.003415 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.996500 B = 8197.975246 C = 8681.915494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.074 3.926 10 C -0.187 4.187 11 C -0.161 4.161 12 C 0.093 3.907 13 N -0.764 5.764 14 C 0.138 3.862 15 C -0.121 4.121 16 C -0.089 4.089 17 C -0.122 4.122 18 C -0.126 4.126 19 C -0.125 4.125 20 C -0.121 4.121 21 C -0.164 4.164 22 C -0.124 4.124 23 H 0.275 0.725 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.383 0.617 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.662 -12.600 8.234 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.071 3.929 10 C -0.207 4.207 11 C -0.183 4.183 12 C -0.004 4.004 13 N -0.399 5.399 14 C 0.013 3.987 15 C -0.159 4.159 16 C -0.108 4.108 17 C -0.159 4.159 18 C -0.164 4.164 19 C -0.162 4.162 20 C -0.158 4.158 21 C -0.186 4.186 22 C -0.144 4.144 23 H 0.086 0.914 24 H 0.109 0.891 25 H 0.103 0.897 26 H 0.215 0.785 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.997 -12.329 8.328 16.891 hybrid contribution 0.399 0.505 -0.252 0.691 sum -7.598 -11.824 8.075 16.209 Atomic orbital electron populations 1.69860 1.07358 1.28525 1.37844 1.25790 0.94646 1.00852 0.92757 0.86420 0.80748 0.81390 0.78777 1.19888 1.20308 1.18693 1.19353 0.97861 0.91383 1.41279 0.90993 1.17491 0.92502 0.91983 0.90954 1.20544 1.02699 0.92655 1.04785 1.19810 0.98083 0.97041 1.03340 1.17375 0.95617 0.85754 1.01695 1.43891 1.33166 1.05785 1.57094 1.21022 0.88394 0.95508 0.93789 1.21877 0.97200 0.97359 0.99421 1.21712 0.96993 0.96579 0.95543 1.22495 0.99824 0.99675 0.93918 1.22515 0.99970 0.95521 0.98368 1.22354 1.01369 0.97198 0.95316 1.22213 1.00685 0.96572 0.96351 1.20092 1.01499 0.91940 1.05070 1.20929 0.98175 0.96405 0.98896 0.91390 0.89084 0.89660 0.78534 0.93751 0.93521 0.91830 0.91709 0.90880 0.91316 0.91505 0.91699 0.91816 0.92071 0.91802 0.92018 0.91770 0.89450 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.82 10.98 55.54 0.61 -21.21 16 2 C 0.07 1.95 5.13 -17.34 -0.09 1.87 16 3 Si 0.90 19.49 29.60 -169.99 -5.03 14.46 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.47 -12.93 9.03 -37.87 -0.34 -13.28 16 8 H 0.07 1.92 7.91 -52.49 -0.41 1.51 16 9 C 0.07 2.03 5.57 -106.79 -0.59 1.44 16 10 C -0.19 -4.74 9.74 -39.27 -0.38 -5.12 16 11 C -0.16 -3.71 9.82 -39.77 -0.39 -4.10 16 12 C 0.09 2.09 6.67 -83.69 -0.56 1.53 16 13 N -0.76 -13.74 5.70 -58.50 -0.33 -14.07 16 14 C 0.14 2.11 4.74 -4.05 -0.02 2.09 16 15 C -0.12 -1.40 4.45 -26.73 -0.12 -1.51 16 16 C -0.09 -0.91 2.93 -89.50 -0.26 -1.17 16 17 C -0.12 -1.22 5.50 -25.03 -0.14 -1.36 16 18 C -0.13 -1.09 6.91 -24.69 -0.17 -1.26 16 19 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 20 C -0.12 -1.06 6.46 -25.62 -0.17 -1.23 16 21 C -0.16 -3.96 9.23 -39.77 -0.37 -4.33 16 22 C -0.12 -3.33 8.63 -39.26 -0.34 -3.67 16 23 H 0.28 6.79 8.30 -40.82 -0.34 6.46 16 24 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 25 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 26 H 0.38 6.11 8.47 -40.82 -0.35 5.76 16 27 H 0.04 0.73 7.92 -51.93 -0.41 0.31 16 28 H 0.05 0.74 7.28 -51.93 -0.38 0.36 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.73 8.02 -51.93 -0.42 0.32 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.73 7.77 -51.93 -0.40 0.33 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.55 7.67 -51.92 -0.40 0.16 16 40 H 0.09 1.94 6.68 -52.49 -0.35 1.59 16 41 H 0.12 3.26 6.18 -52.49 -0.32 2.93 16 LS Contribution 326.69 15.07 4.92 4.92 Total: -1.00 -28.49 326.69 -10.75 -39.23 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.81 Total: 7.97 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: -4.11 Total: -31.30 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.28 Total: -35.28 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.49 -10.75 -39.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302274312.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.876 kcal (2) G-P(sol) polarization free energy of solvation -28.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds