Wall clock time and date at job start Mon Mar 30 2020 07:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86795 * 120.00254 * 2 1 4 4 H 1.48504 * 109.47109 * 274.64762 * 3 2 1 5 5 H 1.48498 * 109.47466 * 34.64947 * 3 2 1 6 6 H 1.48499 * 109.47051 * 154.65426 * 3 2 1 7 7 C 1.39871 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00267 * 162.12999 * 7 2 1 9 9 C 1.41139 * 120.00090 * 342.12455 * 7 2 1 10 10 C 1.40881 * 120.15789 * 155.08443 * 9 7 2 11 11 C 1.36340 * 119.83786 * 180.02562 * 10 9 7 12 12 C 1.39567 * 120.16210 * 359.97438 * 11 10 9 13 13 N 1.38857 * 119.84507 * 179.97438 * 12 11 10 14 14 C 1.46493 * 120.00391 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47278 * 180.02562 * 14 13 12 16 16 C 1.53007 * 109.46991 * 180.02562 * 15 14 13 17 17 C 1.54263 * 110.03011 * 292.90703 * 16 15 14 18 18 C 1.54963 * 104.16003 * 217.13665 * 17 16 15 19 19 C 1.54896 * 102.77632 * 37.88766 * 18 17 16 20 20 C 1.53869 * 110.03056 * 175.69047 * 16 15 14 21 21 C 1.39569 * 120.31353 * 0.25765 * 12 11 10 22 22 C 1.36337 * 120.16260 * 359.48446 * 21 12 11 23 23 H 0.97002 * 119.99792 * 0.02562 * 1 2 3 24 24 H 1.07994 * 120.07910 * 0.02562 * 10 9 7 25 25 H 1.08004 * 119.92133 * 179.97438 * 11 10 9 26 26 H 0.97007 * 119.99606 * 0.02562 * 13 12 11 27 27 H 1.08999 * 109.46886 * 60.00013 * 14 13 12 28 28 H 1.09000 * 109.47266 * 300.00214 * 14 13 12 29 29 H 1.09003 * 109.46750 * 299.99765 * 15 14 13 30 30 H 1.08999 * 109.47275 * 60.00101 * 15 14 13 31 31 H 1.08999 * 110.01582 * 54.29599 * 16 15 14 32 32 H 1.09004 * 110.48769 * 335.78256 * 17 16 15 33 33 H 1.08999 * 110.48577 * 98.43101 * 17 16 15 34 34 H 1.08997 * 110.72408 * 279.57974 * 18 17 16 35 35 H 1.08999 * 110.92541 * 156.29462 * 18 17 16 36 36 H 1.09001 * 110.48466 * 203.40559 * 19 18 17 37 37 H 1.09008 * 110.59341 * 80.81775 * 19 18 17 38 38 H 1.09000 * 110.03226 * 238.56884 * 20 16 15 39 39 H 1.09007 * 110.03293 * 359.97438 * 20 16 15 40 40 H 1.07996 * 119.91760 * 179.71779 * 21 12 11 41 41 H 1.08000 * 120.08371 * 180.23529 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6176 0.0000 4 1 2.3923 2.1031 -1.3955 5 1 1.4932 2.6223 0.7960 6 1 3.5863 1.4136 0.5993 7 6 2.0083 -1.2114 0.0005 8 1 3.0491 -1.2341 -0.2864 9 6 1.3536 -2.4040 0.3763 10 6 1.8226 -3.6468 -0.0930 11 6 1.1849 -4.7948 0.2736 12 6 0.0705 -4.7408 1.1121 13 7 -0.5743 -5.9140 1.4809 14 6 -1.7446 -5.8614 2.3604 15 6 -2.2597 -7.2804 2.6095 16 6 -3.4825 -7.2253 3.5276 17 6 -3.0664 -6.7459 4.9335 18 6 -3.9525 -7.5774 5.8952 19 6 -3.9996 -8.9635 5.2053 20 6 -4.0759 -8.6344 3.7001 21 6 -0.4026 -3.5127 1.5769 22 6 0.2283 -2.3572 1.2227 23 1 -0.4850 0.8401 -0.0004 24 1 2.6850 -3.6901 -0.7415 25 1 1.5430 -5.7483 -0.0857 26 1 -0.2496 -6.7685 1.1562 27 1 -2.5275 -5.2679 1.8882 28 1 -1.4654 -5.4047 3.3099 29 1 -2.5389 -7.7374 1.6601 30 1 -1.4766 -7.8735 3.0819 31 1 -4.2321 -6.5529 3.1105 32 1 -2.0113 -6.9544 5.1110 33 1 -3.2707 -5.6816 5.0497 34 1 -4.9517 -7.1479 5.9675 35 1 -3.4935 -7.6520 6.8810 36 1 -4.8845 -9.5165 5.5203 37 1 -3.0965 -9.5326 5.4262 38 1 -5.1139 -8.6457 3.3676 39 1 -3.4930 -9.3575 3.1294 40 1 -1.2682 -3.4781 2.2218 41 1 -0.1366 -1.4079 1.5862 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302274312.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:28 Heat of formation + Delta-G solvation = -21.866057 kcal Electronic energy + Delta-G solvation = -18455.774286 eV Core-core repulsion = 15719.034526 eV Total energy + Delta-G solvation = -2736.739760 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.94705 -39.26102 -36.80946 -34.99516 -32.75427 -31.35507 -30.32664 -29.55815 -27.71461 -25.75993 -23.97148 -22.62780 -21.76244 -21.30905 -20.43396 -19.15232 -17.81639 -16.83384 -16.81683 -16.21097 -15.97739 -15.67757 -15.50196 -14.55795 -14.44522 -14.17256 -14.08538 -13.91400 -13.48016 -13.35999 -12.99422 -12.73244 -12.65333 -12.46594 -12.22854 -11.93732 -11.86610 -11.63116 -11.57745 -11.47265 -11.44850 -11.22096 -11.16923 -11.03142 -10.28184 -9.41362 -8.54889 -8.16197 -6.00735 1.10534 1.17918 1.40142 1.52898 1.59340 2.27683 2.84210 2.91003 3.69366 3.76305 3.84704 3.88340 4.19803 4.27080 4.42603 4.50419 4.51371 4.60034 4.68738 4.73666 4.77477 4.82864 4.92036 5.01807 5.03065 5.11997 5.14256 5.17437 5.23838 5.27555 5.30421 5.41661 5.45865 5.51343 5.56669 5.68846 5.80443 5.96314 6.18862 6.38907 6.67086 6.87116 7.08352 7.15669 7.33318 8.48659 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037676 B = 0.003415 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.996500 B = 8197.975246 C = 8681.915494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.031 3.969 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.506 4.506 8 H 0.068 0.932 9 C 0.035 3.965 10 C -0.196 4.196 11 C -0.166 4.166 12 C 0.109 3.891 13 N -0.753 5.753 14 C 0.136 3.864 15 C -0.108 4.108 16 C -0.089 4.089 17 C -0.125 4.125 18 C -0.125 4.125 19 C -0.123 4.123 20 C -0.118 4.118 21 C -0.176 4.176 22 C -0.144 4.144 23 H 0.282 0.718 24 H 0.098 0.902 25 H 0.119 0.881 26 H 0.397 0.603 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.077 -14.156 8.693 18.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.181 4.181 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.537 4.537 8 H 0.086 0.914 9 C 0.032 3.968 10 C -0.216 4.216 11 C -0.188 4.188 12 C 0.009 3.991 13 N -0.389 5.389 14 C 0.011 3.989 15 C -0.146 4.146 16 C -0.108 4.108 17 C -0.163 4.163 18 C -0.162 4.162 19 C -0.161 4.161 20 C -0.156 4.156 21 C -0.198 4.198 22 C -0.164 4.164 23 H 0.092 0.908 24 H 0.116 0.884 25 H 0.137 0.863 26 H 0.231 0.769 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.429 -13.938 8.795 18.511 hybrid contribution 0.459 0.821 -0.364 1.009 sum -7.970 -13.117 8.430 17.512 Atomic orbital electron populations 1.69925 1.08804 1.29777 1.38549 1.26636 0.95463 1.04171 0.91829 0.85278 0.79153 0.76582 0.79132 1.18971 1.19288 1.18499 1.19591 0.98001 0.92753 1.43398 0.91351 1.17826 0.93599 0.93120 0.92260 1.20774 1.03109 0.92868 1.04825 1.20120 0.97893 0.97732 1.03048 1.17501 0.94954 0.86715 0.99894 1.43959 1.33253 1.04939 1.56700 1.21159 0.87023 0.98006 0.92671 1.21785 0.97835 0.94703 1.00236 1.21709 0.96275 0.97675 0.95125 1.22505 0.99803 0.99492 0.94496 1.22517 0.99811 0.95579 0.98321 1.22360 1.02074 0.96917 0.94708 1.22198 1.01011 0.95424 0.96957 1.20238 1.01978 0.92003 1.05597 1.20855 0.98986 0.96614 0.99939 0.90773 0.88371 0.86331 0.76890 0.94792 0.94081 0.91055 0.90947 0.91369 0.91947 0.92395 0.91365 0.91269 0.90894 0.91601 0.91368 0.91287 0.88048 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.83 10.98 21.82 0.24 -46.59 16 2 C 0.03 1.65 5.13 85.23 0.44 2.09 16 3 Si 0.98 40.67 29.60 68.60 2.03 42.70 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.51 -28.96 9.03 23.38 0.21 -28.75 16 8 H 0.07 3.78 7.91 -2.91 -0.02 3.76 16 9 C 0.03 1.98 5.57 -21.27 -0.12 1.87 16 10 C -0.20 -10.00 9.74 22.47 0.22 -9.79 16 11 C -0.17 -7.43 9.82 22.15 0.22 -7.22 16 12 C 0.11 4.78 6.67 38.67 0.26 5.03 16 13 N -0.75 -25.43 5.70 -339.00 -1.93 -27.36 16 14 C 0.14 3.93 4.74 86.38 0.41 4.34 16 15 C -0.11 -2.23 4.45 30.60 0.14 -2.10 16 16 C -0.09 -1.64 2.93 -10.07 -0.03 -1.67 16 17 C -0.13 -2.35 5.50 31.69 0.17 -2.18 16 18 C -0.12 -1.91 6.91 31.91 0.22 -1.69 16 19 C -0.12 -1.69 6.83 31.67 0.22 -1.48 16 20 C -0.12 -1.77 6.46 31.32 0.20 -1.57 16 21 C -0.18 -8.56 9.23 22.15 0.20 -8.36 16 22 C -0.14 -7.99 8.63 22.48 0.19 -7.79 16 23 H 0.28 14.24 8.30 -92.71 -0.77 13.47 16 24 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 25 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 26 H 0.40 11.40 8.47 -92.70 -0.79 10.61 16 27 H 0.03 1.07 7.92 -2.39 -0.02 1.05 16 28 H 0.04 1.25 7.28 -2.39 -0.02 1.24 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.43 8.02 -2.39 -0.02 1.41 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.24 7.77 -2.38 -0.02 1.22 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.98 7.67 -2.38 -0.02 0.96 16 40 H 0.10 4.52 6.68 -2.91 -0.02 4.50 16 41 H 0.10 5.71 6.18 -2.91 -0.02 5.70 16 Total: -1.00 -62.27 326.69 3.50 -58.77 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.21 Total: 31.75 kcal Atomic # 6 Polarization: -62.22 SS G_CDS: 2.95 Total: -59.27 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -1.69 Total: -73.95 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -62.27 3.50 -58.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302274312.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.902 kcal (2) G-P(sol) polarization free energy of solvation -62.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds