Wall clock time and date at job start Mon Mar 30 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 119.99952 * 2 1 4 4 H 1.48497 * 109.47025 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47335 * 299.99970 * 3 2 1 6 6 H 1.48493 * 109.47243 * 59.99936 * 3 2 1 7 7 C 1.37874 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00208 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99939 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.46992 * 185.06406 * 9 7 2 11 11 C 1.46899 * 111.00287 * 195.60080 * 10 9 7 12 12 C 1.52998 * 109.46897 * 75.16714 * 11 10 9 13 13 H 1.09003 * 110.82089 * 308.60670 * 12 11 10 14 14 C 1.54888 * 110.75793 * 71.94503 * 12 11 10 15 15 C 1.54265 * 104.19979 * 156.25292 * 14 12 11 16 16 C 1.54224 * 106.63458 * 336.40628 * 15 14 12 17 17 F 1.39903 * 110.14142 * 240.73112 * 16 15 14 18 18 F 1.39899 * 110.08627 * 119.19782 * 16 15 14 19 19 C 1.54261 * 106.42848 * 359.97438 * 16 15 14 20 20 C 1.46898 * 110.99815 * 71.64779 * 10 9 7 21 21 C 1.53006 * 117.49765 * 250.48146 * 20 10 9 22 22 C 1.52999 * 117.49794 * 181.82504 * 20 10 9 23 23 H 0.97002 * 120.00059 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47174 * 65.06822 * 9 7 2 25 25 H 1.09003 * 109.47255 * 305.06202 * 9 7 2 26 26 H 1.09006 * 109.46681 * 315.17407 * 11 10 9 27 27 H 1.08994 * 109.47593 * 195.17284 * 11 10 9 28 28 H 1.08998 * 110.48618 * 274.93655 * 14 12 11 29 29 H 1.09005 * 110.47999 * 37.57544 * 14 12 11 30 30 H 1.09000 * 110.02807 * 95.67543 * 15 14 12 31 31 H 1.09001 * 110.03603 * 217.05778 * 15 14 12 32 32 H 1.09002 * 110.48336 * 264.89934 * 19 16 15 33 33 H 1.09004 * 110.48614 * 142.38899 * 19 16 15 34 34 H 1.08993 * 115.55345 * 36.15355 * 20 10 9 35 35 H 1.08996 * 117.49881 * 0.02562 * 21 20 10 36 36 H 1.08998 * 117.49617 * 145.02373 * 21 20 10 37 37 H 1.08997 * 117.49979 * 214.98136 * 22 20 10 38 38 H 1.09009 * 117.50160 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2010 -3.6130 0.1211 11 6 1.5670 -4.8876 -0.2414 12 6 1.4167 -4.9682 -1.7618 13 1 0.9304 -4.0737 -2.1510 14 6 2.7930 -5.1834 -2.4388 15 6 2.4504 -5.8374 -3.7933 16 6 1.0736 -6.5110 -3.6226 17 9 1.1807 -7.8885 -3.8424 18 9 0.1517 -5.9531 -4.5148 19 6 0.6328 -6.2406 -2.1692 20 6 2.7701 -3.6741 1.4740 21 6 4.2426 -3.2925 1.6388 22 6 3.8138 -4.7575 1.7530 23 1 -0.4850 0.8401 0.0004 24 1 0.6938 -2.5970 -0.9322 25 1 0.5583 -2.5188 0.8409 26 1 0.5835 -4.9497 0.2247 27 1 2.1868 -5.7138 0.1068 28 1 3.2960 -4.2287 -2.5925 29 1 3.4129 -5.8501 -1.8393 30 1 2.3994 -5.0771 -4.5727 31 1 3.2027 -6.5836 -4.0487 32 1 0.9039 -7.0780 -1.5263 33 1 -0.4409 -6.0580 -2.1240 34 1 2.0886 -3.4116 2.2830 35 1 4.7888 -2.9957 0.7436 36 1 4.5297 -2.7793 2.5566 37 1 3.8191 -5.2075 2.7458 38 1 4.0779 -5.4252 0.9328 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304189054.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:23 Heat of formation + Delta-G solvation = -87.268280 kcal Electronic energy + Delta-G solvation = -20087.630584 eV Core-core repulsion = 16793.825242 eV Total energy + Delta-G solvation = -3293.805343 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.79573 -46.87611 -38.39729 -36.73188 -33.71580 -32.26870 -29.54050 -28.21851 -26.51828 -23.74729 -22.35456 -21.73528 -20.87066 -20.11493 -19.22173 -17.44668 -16.67369 -16.52026 -15.78902 -15.27734 -14.69846 -14.40370 -14.32107 -14.20035 -13.67087 -13.39715 -13.23181 -13.09858 -12.52936 -12.07680 -11.94348 -11.65563 -11.50811 -11.26923 -11.11258 -10.95118 -10.89016 -10.70965 -10.62539 -10.43043 -10.15774 -9.98278 -9.70945 -9.37856 -9.17473 -8.41471 -7.29144 -6.01503 -4.01783 3.30939 3.38800 3.43368 3.84208 4.03825 4.30854 4.42572 4.44247 4.47641 4.75280 5.22610 5.27188 5.32584 5.33870 5.43420 5.51413 5.58362 5.63209 5.69874 5.78014 5.90632 5.99057 6.03503 6.05359 6.16092 6.27227 6.35633 6.45812 6.54559 6.64257 6.75356 7.18182 7.33835 7.83961 8.08902 8.18493 8.53724 9.07413 9.62500 11.09281 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019672 B = 0.005900 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.025369 B = 4744.623421 C = 5596.365747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.053 3.947 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.497 4.497 8 H 0.065 0.935 9 C 0.193 3.807 10 N -0.508 5.508 11 C 0.067 3.933 12 C -0.082 4.082 13 H 0.094 0.906 14 C -0.102 4.102 15 C -0.164 4.164 16 C 0.279 3.721 17 F -0.206 7.206 18 F -0.200 7.200 19 C -0.157 4.157 20 C 0.041 3.959 21 C -0.157 4.157 22 C -0.196 4.196 23 H 0.260 0.740 24 H 0.030 0.970 25 H -0.005 1.005 26 H 0.028 0.972 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.615 -12.553 -2.615 13.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.148 4.148 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.536 4.536 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.233 5.233 11 C -0.062 4.062 12 C -0.101 4.101 13 H 0.112 0.888 14 C -0.139 4.139 15 C -0.202 4.202 16 C 0.243 3.757 17 F -0.187 7.187 18 F -0.181 7.181 19 C -0.196 4.196 20 C -0.068 4.068 21 C -0.194 4.194 22 C -0.233 4.233 23 H 0.069 0.931 24 H 0.048 0.952 25 H 0.013 0.987 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.819 -12.365 -2.983 13.602 hybrid contribution -0.493 0.765 0.391 0.991 sum 4.326 -11.600 -2.593 12.649 Atomic orbital electron populations 1.69966 1.06028 1.26562 1.51573 1.24985 0.94816 0.99249 0.95707 0.86488 0.80137 0.83657 0.77427 1.19671 1.21142 1.21229 1.21183 0.93671 0.89653 1.49113 0.91690 1.19813 0.89695 0.87430 0.96203 1.61908 1.36791 1.02828 1.21725 1.21944 0.97386 0.93512 0.93335 1.22103 0.95113 0.96429 0.96479 0.88811 1.22247 0.97486 1.01471 0.92724 1.23275 0.93724 1.01484 1.01707 1.21998 0.89729 0.74612 0.89405 1.92978 1.96651 1.33175 1.95909 1.93006 1.69036 1.84950 1.71139 1.23390 1.02730 1.01113 0.92339 1.22166 0.91377 1.01523 0.91783 1.22879 0.98553 0.95651 1.02356 1.23066 1.06194 0.92622 1.01466 0.93079 0.95243 0.98685 0.95378 0.91698 0.89384 0.91202 0.88991 0.89361 0.88767 0.89205 0.90300 0.88573 0.89787 0.89847 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 13.29 55.43 0.74 -25.68 16 2 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.50 -13.49 8.87 -34.44 -0.31 -13.80 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 4.78 4.55 -4.97 -0.02 4.76 16 10 N -0.51 -10.06 4.46 -228.08 -1.02 -11.08 16 11 C 0.07 1.09 4.37 -3.83 -0.02 1.07 16 12 C -0.08 -1.24 2.94 -88.62 -0.26 -1.50 16 13 H 0.09 1.67 6.65 -51.93 -0.35 1.32 16 14 C -0.10 -1.35 6.21 -25.07 -0.16 -1.51 16 15 C -0.16 -1.98 6.51 -25.43 -0.17 -2.14 16 16 C 0.28 3.75 2.59 -25.43 -0.07 3.68 16 17 F -0.21 -2.85 17.05 2.25 0.04 -2.81 16 18 F -0.20 -3.05 17.05 2.25 0.04 -3.01 16 19 C -0.16 -2.04 5.84 -25.07 -0.15 -2.18 16 20 C 0.04 0.75 4.78 -67.71 -0.32 0.43 16 21 C -0.16 -2.62 10.46 -26.69 -0.28 -2.90 16 22 C -0.20 -2.86 9.53 -26.70 -0.25 -3.11 16 23 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.03 0.77 6.47 -51.93 -0.34 0.43 16 25 H 0.00 -0.13 7.94 -51.93 -0.41 -0.54 16 26 H 0.03 0.48 8.01 -51.93 -0.42 0.06 16 27 H 0.06 0.93 6.35 -51.93 -0.33 0.60 16 28 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 30 H 0.09 1.10 8.02 -51.93 -0.42 0.68 16 31 H 0.09 0.92 8.03 -51.93 -0.42 0.51 16 32 H 0.09 1.08 8.02 -51.93 -0.42 0.66 16 33 H 0.09 1.16 8.11 -51.93 -0.42 0.74 16 34 H 0.08 1.56 7.97 -51.93 -0.41 1.15 16 35 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.09 1.25 7.46 -51.92 -0.39 0.87 16 LS Contribution 314.45 15.07 4.74 4.74 Total: -1.00 -28.70 314.45 -8.54 -37.24 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.96 Total: 0.01 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -2.09 Total: -15.82 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.28 Total: -36.76 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.08 Total: -5.83 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.70 -8.54 -37.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304189054.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.027 kcal (2) G-P(sol) polarization free energy of solvation -28.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds