Wall clock time and date at job start Mon Mar 30 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00172 * 2 1 4 4 H 1.48498 * 109.47047 * 269.99866 * 3 2 1 5 5 H 1.48502 * 109.47074 * 29.99891 * 3 2 1 6 6 H 1.48497 * 109.47068 * 149.99931 * 3 2 1 7 7 C 1.37883 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99492 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99974 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.47340 * 174.25799 * 9 7 2 11 11 C 1.46902 * 111.00701 * 159.96332 * 10 9 7 12 12 C 1.52996 * 109.47486 * 190.00243 * 11 10 9 13 13 H 1.09001 * 110.43566 * 307.53655 * 12 11 10 14 14 C 1.54263 * 110.48441 * 184.99625 * 12 11 10 15 15 C 1.53869 * 106.60028 * 217.71094 * 14 12 11 16 16 C 1.54272 * 106.60022 * 359.97438 * 15 14 12 17 17 F 1.39897 * 110.48569 * 142.28477 * 16 15 14 18 18 F 1.39895 * 110.48930 * 264.80396 * 16 15 14 19 19 C 1.54888 * 110.48679 * 70.22398 * 12 11 10 20 20 C 1.46906 * 111.00127 * 283.91695 * 10 9 7 21 21 C 1.53001 * 117.49832 * 137.48127 * 20 10 9 22 22 C 1.52998 * 60.00012 * 252.51545 * 21 20 10 23 23 H 0.96997 * 120.00132 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47678 * 54.25688 * 9 7 2 25 25 H 1.09001 * 109.47214 * 294.25828 * 9 7 2 26 26 H 1.09002 * 109.46897 * 69.99285 * 11 10 9 27 27 H 1.09006 * 109.46347 * 310.00122 * 11 10 9 28 28 H 1.08997 * 110.03393 * 336.99974 * 14 12 11 29 29 H 1.09000 * 110.02955 * 98.42848 * 14 12 11 30 30 H 1.09000 * 110.03969 * 119.28459 * 15 14 12 31 31 H 1.09001 * 110.03273 * 240.67109 * 15 14 12 32 32 H 1.09000 * 110.75419 * 274.93413 * 19 12 11 33 33 H 1.08998 * 110.75901 * 38.30185 * 19 12 11 34 34 H 1.08997 * 115.54726 * 283.19507 * 20 10 9 35 35 H 1.09000 * 117.49804 * 0.02562 * 21 20 10 36 36 H 1.09003 * 117.49237 * 145.02034 * 21 20 10 37 37 H 1.09011 * 117.49529 * 252.51097 * 22 21 20 38 38 H 1.08997 * 117.49668 * 107.49781 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5721 0.1402 11 6 5.3915 -2.6859 -0.3201 12 6 5.7844 -4.1626 -0.3963 13 1 5.5703 -4.6626 0.5483 14 6 7.2774 -4.3061 -0.7569 15 6 7.3880 -5.5197 -1.6962 16 6 5.9584 -6.0719 -1.8732 17 9 5.7618 -6.5096 -3.1873 18 9 5.7207 -7.1138 -0.9705 19 6 5.0430 -4.8612 -1.5630 20 6 3.8651 -3.0419 1.5254 21 6 3.3531 -4.4675 1.7408 22 6 2.4492 -3.2742 2.0567 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.5936 0.8352 25 1 3.8752 -0.7721 -0.9358 26 1 6.0492 -2.1704 0.3799 27 1 5.4855 -2.2334 -1.3073 28 1 7.6268 -3.4074 -1.2652 29 1 7.8646 -4.4775 0.1453 30 1 7.7911 -5.2102 -2.6605 31 1 8.0296 -6.2798 -1.2503 32 1 4.0546 -5.1954 -1.2475 33 1 4.9709 -4.1997 -2.4262 34 1 4.6095 -2.6629 2.2256 35 1 3.1176 -5.0570 0.8547 36 1 3.7610 -5.0268 2.5829 37 1 2.2623 -3.0484 3.1067 38 1 1.6187 -3.0785 1.3785 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304189058.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:27 Heat of formation + Delta-G solvation = -79.075708 kcal Electronic energy + Delta-G solvation = -20285.533394 eV Core-core repulsion = 16992.083307 eV Total energy + Delta-G solvation = -3293.450086 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.77232 -46.90501 -38.58724 -36.71900 -33.60483 -32.39704 -29.83461 -28.49549 -26.96535 -23.63723 -22.01852 -21.60500 -21.05768 -20.13666 -19.36597 -17.46439 -16.86296 -16.57154 -15.92687 -15.24813 -15.01623 -14.44835 -14.32157 -14.02734 -13.68482 -13.60166 -13.24669 -13.00641 -12.68445 -12.37082 -12.08349 -11.73839 -11.69128 -11.46794 -11.28969 -11.10378 -10.79608 -10.70110 -10.56028 -10.41030 -10.24676 -9.94858 -9.60325 -9.22638 -9.11080 -8.54184 -7.42611 -6.04059 -4.00036 3.26821 3.34794 3.35757 3.76509 4.00529 4.24213 4.39670 4.41541 4.51975 4.65613 5.09707 5.14485 5.18903 5.27962 5.29445 5.43481 5.59363 5.63076 5.70828 5.73245 5.81816 5.89914 5.95996 6.04297 6.12938 6.18217 6.21587 6.39683 6.48408 6.73932 6.76393 6.94857 7.16627 7.63685 7.86325 8.06015 8.66668 9.05471 9.57589 11.08455 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.026768 B = 0.005493 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.787665 B = 5096.269977 C = 5336.355868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.870 3.130 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.500 4.500 8 H 0.087 0.913 9 C 0.163 3.837 10 N -0.500 5.500 11 C 0.066 3.934 12 C -0.085 4.085 13 H 0.089 0.911 14 C -0.118 4.118 15 C -0.158 4.158 16 C 0.271 3.729 17 F -0.203 7.203 18 F -0.198 7.198 19 C -0.136 4.136 20 C 0.019 3.981 21 C -0.184 4.184 22 C -0.152 4.152 23 H 0.263 0.737 24 H -0.007 1.007 25 H 0.021 0.979 26 H 0.027 0.973 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.483 -9.099 -0.554 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.698 3.302 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.538 4.538 8 H 0.105 0.895 9 C 0.037 3.963 10 N -0.224 5.224 11 C -0.063 4.063 12 C -0.104 4.104 13 H 0.107 0.893 14 C -0.157 4.157 15 C -0.197 4.197 16 C 0.235 3.765 17 F -0.184 7.184 18 F -0.179 7.179 19 C -0.174 4.174 20 C -0.090 4.090 21 C -0.221 4.221 22 C -0.189 4.189 23 H 0.073 0.927 24 H 0.011 0.989 25 H 0.038 0.962 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 14.025 -9.292 -0.868 16.846 hybrid contribution 0.905 1.346 0.447 1.682 sum 14.929 -7.947 -0.420 16.918 Atomic orbital electron populations 1.69880 1.06019 1.26704 1.51421 1.24891 0.94697 0.98637 0.95151 0.86939 0.80334 0.84442 0.78462 1.20323 1.21304 1.19379 1.21095 0.88609 0.94592 1.49512 0.89547 1.20199 0.97344 0.83706 0.95065 1.61733 1.16812 1.25621 1.18229 1.22094 0.90275 0.93846 1.00050 1.21963 0.92601 0.97100 0.98733 0.89282 1.22161 0.97336 0.97118 0.99043 1.23083 0.94148 0.99646 1.02780 1.22169 0.98230 0.84396 0.71737 1.92980 1.96376 1.91406 1.37634 1.92988 1.95789 1.61515 1.67572 1.23373 0.99343 0.93989 1.00706 1.22071 0.98268 0.98234 0.90433 1.23034 1.05790 0.91107 1.02213 1.23197 0.95255 0.99423 1.01045 0.92747 0.98923 0.96151 0.95504 0.90992 0.90598 0.90960 0.88884 0.89616 0.88505 0.88360 0.91409 0.88942 0.90270 0.90263 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 3 Si 0.87 21.07 27.59 -169.99 -4.69 16.38 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.29 6.38 56.52 0.36 -5.93 16 7 C -0.50 -13.53 8.35 -34.44 -0.29 -13.81 16 8 H 0.09 2.53 6.01 -52.49 -0.32 2.21 16 9 C 0.16 3.76 3.86 -4.98 -0.02 3.74 16 10 N -0.50 -9.72 4.46 -228.08 -1.02 -10.73 16 11 C 0.07 1.02 4.22 -3.82 -0.02 1.00 16 12 C -0.09 -1.10 2.75 -88.97 -0.24 -1.34 16 13 H 0.09 1.22 6.25 -51.93 -0.32 0.89 16 14 C -0.12 -1.19 6.37 -25.62 -0.16 -1.35 16 15 C -0.16 -1.57 6.41 -25.61 -0.16 -1.74 16 16 C 0.27 3.46 2.49 -25.05 -0.06 3.39 16 17 F -0.20 -2.84 17.16 2.25 0.04 -2.81 16 18 F -0.20 -2.80 17.17 2.25 0.04 -2.76 16 19 C -0.14 -1.84 5.81 -24.72 -0.14 -1.99 16 20 C 0.02 0.35 4.20 -67.71 -0.28 0.06 16 21 C -0.18 -2.98 9.15 -26.73 -0.24 -3.22 16 22 C -0.15 -2.91 9.47 -26.73 -0.25 -3.16 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H -0.01 -0.17 6.65 -51.93 -0.35 -0.51 16 25 H 0.02 0.47 7.44 -51.93 -0.39 0.09 16 26 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 27 H 0.07 1.09 7.70 -51.93 -0.40 0.69 16 28 H 0.08 0.70 7.84 -51.93 -0.41 0.29 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.81 8.11 -51.93 -0.42 0.39 16 31 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 32 H 0.10 1.46 7.79 -51.93 -0.40 1.05 16 33 H 0.10 1.33 7.97 -51.93 -0.41 0.91 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.09 1.54 7.79 -51.93 -0.40 1.14 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.40 8.14 -51.92 -0.42 0.98 16 38 H 0.13 2.83 5.40 -51.93 -0.28 2.55 16 LS Contribution 305.54 15.07 4.60 4.60 Total: -1.00 -29.00 305.54 -8.04 -37.04 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.81 Total: 1.07 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -1.98 Total: -16.61 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.24 Total: -36.91 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.08 Total: -5.57 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.69 Total: 16.38 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.00 -8.04 -37.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304189058.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.037 kcal (2) G-P(sol) polarization free energy of solvation -28.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds