Wall clock time and date at job start Mon Mar 30 2020 06:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00172 * 2 1 4 4 H 1.48498 * 109.47047 * 269.99866 * 3 2 1 5 5 H 1.48502 * 109.47074 * 29.99891 * 3 2 1 6 6 H 1.48497 * 109.47068 * 149.99931 * 3 2 1 7 7 C 1.37883 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99492 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99974 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.47340 * 174.25799 * 9 7 2 11 11 C 1.46902 * 111.00701 * 159.96332 * 10 9 7 12 12 C 1.52996 * 109.47486 * 190.00243 * 11 10 9 13 13 H 1.09001 * 110.43566 * 307.53655 * 12 11 10 14 14 C 1.54263 * 110.48441 * 184.99625 * 12 11 10 15 15 C 1.53869 * 106.60028 * 217.71094 * 14 12 11 16 16 C 1.54272 * 106.60022 * 359.97438 * 15 14 12 17 17 F 1.39897 * 110.48569 * 142.28477 * 16 15 14 18 18 F 1.39895 * 110.48930 * 264.80396 * 16 15 14 19 19 C 1.54888 * 110.48679 * 70.22398 * 12 11 10 20 20 C 1.46906 * 111.00127 * 283.91695 * 10 9 7 21 21 C 1.53001 * 117.49832 * 137.48127 * 20 10 9 22 22 C 1.52998 * 60.00012 * 252.51545 * 21 20 10 23 23 H 0.96997 * 120.00132 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47678 * 54.25688 * 9 7 2 25 25 H 1.09001 * 109.47214 * 294.25828 * 9 7 2 26 26 H 1.09002 * 109.46897 * 69.99285 * 11 10 9 27 27 H 1.09006 * 109.46347 * 310.00122 * 11 10 9 28 28 H 1.08997 * 110.03393 * 336.99974 * 14 12 11 29 29 H 1.09000 * 110.02955 * 98.42848 * 14 12 11 30 30 H 1.09000 * 110.03969 * 119.28459 * 15 14 12 31 31 H 1.09001 * 110.03273 * 240.67109 * 15 14 12 32 32 H 1.09000 * 110.75419 * 274.93413 * 19 12 11 33 33 H 1.08998 * 110.75901 * 38.30185 * 19 12 11 34 34 H 1.08997 * 115.54726 * 283.19507 * 20 10 9 35 35 H 1.09000 * 117.49804 * 0.02562 * 21 20 10 36 36 H 1.09003 * 117.49237 * 145.02034 * 21 20 10 37 37 H 1.09011 * 117.49529 * 252.51097 * 22 21 20 38 38 H 1.08997 * 117.49668 * 107.49781 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5721 0.1402 11 6 5.3915 -2.6859 -0.3201 12 6 5.7844 -4.1626 -0.3963 13 1 5.5703 -4.6626 0.5483 14 6 7.2774 -4.3061 -0.7569 15 6 7.3880 -5.5197 -1.6962 16 6 5.9584 -6.0719 -1.8732 17 9 5.7618 -6.5096 -3.1873 18 9 5.7207 -7.1138 -0.9705 19 6 5.0430 -4.8612 -1.5630 20 6 3.8651 -3.0419 1.5254 21 6 3.3531 -4.4675 1.7408 22 6 2.4492 -3.2742 2.0567 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.5936 0.8352 25 1 3.8752 -0.7721 -0.9358 26 1 6.0492 -2.1704 0.3799 27 1 5.4855 -2.2334 -1.3073 28 1 7.6268 -3.4074 -1.2652 29 1 7.8646 -4.4775 0.1453 30 1 7.7911 -5.2102 -2.6605 31 1 8.0296 -6.2798 -1.2503 32 1 4.0546 -5.1954 -1.2475 33 1 4.9709 -4.1997 -2.4262 34 1 4.6095 -2.6629 2.2256 35 1 3.1176 -5.0570 0.8547 36 1 3.7610 -5.0268 2.5829 37 1 2.2623 -3.0484 3.1067 38 1 1.6187 -3.0785 1.3785 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304189058.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:26 Heat of formation + Delta-G solvation = -95.959655 kcal Electronic energy + Delta-G solvation = -20286.265537 eV Core-core repulsion = 16992.083307 eV Total energy + Delta-G solvation = -3294.182229 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.82028 -47.96770 -39.88128 -37.90116 -35.25763 -34.28072 -31.19463 -29.55440 -28.53785 -24.88375 -23.81271 -23.05491 -22.09237 -21.29796 -20.75725 -18.94457 -18.38305 -17.65249 -17.02462 -16.78204 -16.18484 -16.13606 -15.66296 -15.34136 -15.03944 -14.68714 -14.53003 -14.31730 -14.01686 -13.83911 -13.66435 -13.10990 -13.02662 -12.74339 -12.47926 -12.37472 -12.26714 -12.12052 -11.92851 -11.68842 -11.50684 -11.42010 -11.21502 -10.96810 -10.71584 -10.63468 -8.95356 -8.20097 -6.20423 1.35839 1.37311 1.46473 2.38186 2.81680 2.95454 3.05569 3.12612 3.21807 3.39009 3.49798 4.07316 4.18592 4.20791 4.24135 4.26729 4.37409 4.48400 4.54240 4.66834 4.69931 4.81625 4.83914 4.90591 4.93044 4.95076 5.02305 5.10725 5.15652 5.25867 5.36367 5.45469 5.53483 5.65549 6.07334 6.51343 6.72592 6.87049 7.41147 8.95698 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.026768 B = 0.005493 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.787665 B = 5096.269977 C = 5336.355868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.251 1.251 7 C -0.496 4.496 8 H 0.049 0.951 9 C 0.171 3.829 10 N -0.516 5.516 11 C 0.065 3.935 12 C -0.078 4.078 13 H 0.084 0.916 14 C -0.110 4.110 15 C -0.149 4.149 16 C 0.265 3.735 17 F -0.213 7.213 18 F -0.207 7.207 19 C -0.139 4.139 20 C 0.015 3.985 21 C -0.149 4.149 22 C -0.177 4.177 23 H 0.263 0.737 24 H -0.010 1.010 25 H 0.026 0.974 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.923 -9.036 -0.210 20.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.191 4.191 3 Si 0.763 3.237 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.175 1.175 7 C -0.535 4.535 8 H 0.067 0.933 9 C 0.045 3.955 10 N -0.241 5.241 11 C -0.063 4.063 12 C -0.097 4.097 13 H 0.102 0.898 14 C -0.148 4.148 15 C -0.187 4.187 16 C 0.229 3.771 17 F -0.194 7.194 18 F -0.188 7.188 19 C -0.177 4.177 20 C -0.094 4.094 21 C -0.187 4.187 22 C -0.215 4.215 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.127 0.873 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.131 0.869 37 H 0.109 0.891 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.494 -9.253 -0.527 19.797 hybrid contribution -0.245 1.207 0.326 1.274 sum 17.249 -8.046 -0.201 19.034 Atomic orbital electron populations 1.70047 1.08000 1.27629 1.53603 1.25767 0.95459 1.02701 0.95145 0.85843 0.79438 0.79430 0.78945 1.19380 1.21402 1.17506 1.21354 0.90971 0.93169 1.47967 0.93325 1.19950 0.94535 0.86060 0.94980 1.61610 1.19860 1.23236 1.19343 1.22202 0.87940 0.95858 1.00251 1.21875 0.94793 0.94967 0.98086 0.89778 1.22144 0.94863 0.97763 1.00034 1.23093 0.91968 0.99805 1.03842 1.22422 0.99972 0.83627 0.71083 1.92960 1.96581 1.91486 1.38345 1.92967 1.96018 1.61988 1.67877 1.23334 0.98640 0.94694 1.01058 1.22205 0.97436 0.99655 0.90092 1.23013 1.02946 0.90025 1.02685 1.23016 0.94761 1.02956 1.00723 0.92834 0.99207 0.95608 0.94112 0.90727 0.89197 0.89128 0.87308 0.88014 0.90977 0.88606 0.89780 0.89778 0.86906 0.89126 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.05 13.96 21.45 0.30 -58.75 16 2 C 0.01 0.32 5.47 84.66 0.46 0.79 16 3 Si 0.94 43.51 27.59 68.60 1.89 45.41 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.25 -10.82 6.38 99.48 0.63 -10.19 16 7 C -0.50 -27.66 8.35 25.60 0.21 -27.45 16 8 H 0.05 3.03 6.01 -2.91 -0.02 3.01 16 9 C 0.17 7.84 3.86 85.56 0.33 8.17 16 10 N -0.52 -19.68 4.46 -875.51 -3.90 -23.58 16 11 C 0.07 1.86 4.22 86.30 0.36 2.22 16 12 C -0.08 -1.83 2.75 -9.72 -0.03 -1.85 16 13 H 0.08 2.07 6.25 -2.39 -0.01 2.05 16 14 C -0.11 -1.76 6.37 31.32 0.20 -1.56 16 15 C -0.15 -2.42 6.41 31.32 0.20 -2.22 16 16 C 0.26 6.30 2.49 31.68 0.08 6.38 16 17 F -0.21 -5.71 17.16 44.97 0.77 -4.94 16 18 F -0.21 -5.57 17.17 44.97 0.77 -4.80 16 19 C -0.14 -3.64 5.81 31.89 0.19 -3.45 16 20 C 0.01 0.53 4.20 44.91 0.19 0.72 16 21 C -0.15 -4.65 9.15 30.59 0.28 -4.37 16 22 C -0.18 -6.89 9.47 30.59 0.29 -6.61 16 23 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 24 H -0.01 -0.45 6.65 -2.39 -0.02 -0.47 16 25 H 0.03 1.16 7.44 -2.39 -0.02 1.14 16 26 H 0.04 1.07 8.12 -2.39 -0.02 1.05 16 27 H 0.07 2.08 7.70 -2.38 -0.02 2.06 16 28 H 0.09 1.24 7.84 -2.39 -0.02 1.22 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.11 1.47 8.11 -2.39 -0.02 1.45 16 31 H 0.10 1.38 8.12 -2.39 -0.02 1.36 16 32 H 0.07 2.21 7.79 -2.39 -0.02 2.20 16 33 H 0.10 2.52 7.97 -2.39 -0.02 2.50 16 34 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.08 2.78 7.79 -2.39 -0.02 2.76 16 36 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 38 H 0.08 3.88 5.40 -2.39 -0.01 3.87 16 Total: -1.00 -64.89 305.54 3.57 -61.32 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.97 Total: 14.57 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 2.77 Total: -29.24 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -3.60 Total: -82.33 kcal Atomic # 9 Polarization: -11.28 SS G_CDS: 1.54 Total: -9.73 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.89 Total: 45.41 kcal Total: -64.89 3.57 -61.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304189058.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.642 kcal (2) G-P(sol) polarization free energy of solvation -64.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds