Wall clock time and date at job start Mon Mar 30 2020 07:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47019 * 2 1 4 4 C 1.50695 * 109.46672 * 120.00390 * 2 1 3 5 5 H 1.08003 * 120.00104 * 119.99563 * 4 2 1 6 6 C 1.37877 * 120.00529 * 299.99672 * 4 2 1 7 7 N 1.31517 * 119.99521 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00562 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46839 * 59.99950 * 8 6 4 10 10 H 1.48501 * 109.47317 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47213 * 300.00449 * 8 6 4 12 12 N 1.46496 * 109.46692 * 240.00197 * 2 1 3 13 13 C 1.46501 * 120.00182 * 300.00040 * 12 2 1 14 14 C 1.37226 * 120.00171 * 120.00486 * 12 2 1 15 15 N 1.31184 * 119.83695 * 359.97438 * 14 12 2 16 16 C 1.36791 * 121.00877 * 179.85991 * 15 14 12 17 17 C 1.39606 * 120.41283 * 195.41561 * 16 15 14 18 18 C 1.37965 * 119.77309 * 179.97438 * 17 16 15 19 19 C 1.38374 * 120.29301 * 359.96373 * 18 17 16 20 20 C 1.38454 * 120.26461 * 0.04984 * 19 18 17 21 21 C 1.37678 * 119.94825 * 359.97438 * 20 19 18 22 22 C 1.50954 * 120.70049 * 179.91387 * 21 20 19 23 23 N 1.37501 * 119.84712 * 180.02562 * 14 12 2 24 24 H 1.08997 * 109.47471 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46959 * 300.00272 * 1 2 3 26 26 H 1.09003 * 109.46944 * 59.99428 * 1 2 3 27 27 H 0.97002 * 120.00172 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47173 * 270.00509 * 13 12 2 29 29 H 1.08996 * 109.47063 * 30.00054 * 13 12 2 30 30 H 1.09006 * 109.46944 * 150.00452 * 13 12 2 31 31 H 1.07999 * 120.11325 * 359.88002 * 17 16 15 32 32 H 1.07999 * 119.84812 * 179.97438 * 18 17 16 33 33 H 1.08004 * 119.87009 * 180.02562 * 19 18 17 34 34 H 1.08003 * 120.02628 * 179.97438 * 20 19 18 35 35 H 1.09005 * 109.79025 * 34.17371 * 22 21 20 36 36 H 1.08997 * 109.83855 * 273.35699 * 22 21 20 37 37 H 0.97001 * 120.70209 * 329.22076 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6531 -1.5887 1.1313 6 6 1.6992 -0.2396 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3223 -1.1198 4.0079 9 1 3.8074 -1.1193 4.0077 10 1 1.8277 -0.4195 5.2204 11 1 1.8279 -2.5200 4.0080 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0931 -1.4281 14 6 2.8072 -0.0237 -2.0995 15 7 3.1219 1.2323 -1.8889 16 6 3.9091 1.9191 -2.7720 17 6 4.5001 3.1279 -2.3998 18 6 5.2920 3.8094 -3.3008 19 6 5.5030 3.2996 -4.5697 20 6 4.9200 2.1015 -4.9462 21 6 4.1274 1.4130 -4.0556 22 6 3.4819 0.1063 -4.4488 23 7 3.2633 -0.6748 -3.2214 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7081 1.1607 3.4844 28 1 2.4156 -2.7377 -0.9718 29 1 0.6903 -2.3001 -0.9847 30 1 1.6237 -2.2851 -2.5004 31 1 4.3366 3.5289 -1.4104 32 1 5.7495 4.7448 -3.0142 33 1 6.1245 3.8386 -5.2695 34 1 5.0869 1.7074 -5.9378 35 1 4.1393 -0.4416 -5.1239 36 1 2.5271 0.2979 -4.9382 37 1 3.4374 -1.6289 -3.2039 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306075807.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:01 Heat of formation + Delta-G solvation = 68.567872 kcal Electronic energy + Delta-G solvation = -19256.098294 eV Core-core repulsion = 16419.739700 eV Total energy + Delta-G solvation = -2836.358594 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.92316 -37.73559 -35.49497 -33.04561 -32.84878 -30.78261 -29.42773 -28.87303 -25.94826 -25.18782 -25.09476 -22.27273 -21.55844 -20.35067 -18.35268 -17.49998 -16.88674 -16.19005 -15.38223 -14.86499 -14.75006 -14.16435 -14.01073 -13.76077 -13.48979 -13.21494 -12.74733 -12.57257 -12.12571 -11.62854 -11.56540 -11.49648 -11.17254 -11.01469 -10.82904 -10.78162 -10.54813 -10.25913 -10.12797 -9.22864 -9.12168 -8.74719 -8.40987 -8.34854 -7.85178 -6.51664 -6.04727 -4.13582 1.61962 1.82644 3.20534 3.28295 3.33793 3.35764 3.44261 4.12284 4.39849 4.53775 4.98943 5.20379 5.25145 5.35505 5.43754 5.47688 5.60837 5.70847 5.91323 5.95761 6.04827 6.16918 6.33461 6.58195 6.65768 6.74270 6.83036 6.95660 6.98694 7.03104 7.05238 7.16346 7.43620 7.64485 7.75131 7.97291 8.09797 8.23783 8.51979 8.87164 9.24924 9.52228 10.99160 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.025132 B = 0.005792 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.849449 B = 4832.771213 C = 5420.618673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.271 3.729 3 H 0.080 0.920 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.278 1.278 12 N -0.570 5.570 13 C 0.092 3.908 14 C 0.651 3.349 15 N -0.623 5.623 16 C 0.202 3.798 17 C -0.142 4.142 18 C -0.092 4.092 19 C -0.182 4.182 20 C -0.081 4.081 21 C -0.211 4.211 22 C 0.189 3.811 23 N -0.775 5.775 24 H 0.027 0.973 25 H 0.095 0.905 26 H 0.012 0.988 27 H 0.264 0.736 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.152 -2.068 -12.971 13.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.171 3.829 3 H 0.098 0.902 4 C -0.566 4.566 5 H 0.074 0.926 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.204 1.204 12 N -0.282 5.282 13 C -0.052 4.052 14 C 0.295 3.705 15 N -0.360 5.360 16 C 0.091 3.909 17 C -0.163 4.163 18 C -0.111 4.111 19 C -0.202 4.202 20 C -0.100 4.100 21 C -0.217 4.217 22 C 0.064 3.936 23 N -0.420 5.420 24 H 0.046 0.954 25 H 0.114 0.886 26 H 0.031 0.969 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.142 0.858 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 3.696 -1.439 -12.126 12.758 hybrid contribution 0.733 -1.316 0.176 1.517 sum 4.429 -2.755 -11.950 13.038 Atomic orbital electron populations 1.22126 0.98298 0.99175 1.00976 1.19091 0.90477 0.94920 0.78431 0.90197 1.21290 1.31904 1.12987 0.90425 0.92600 1.24848 0.94956 0.94966 0.98817 1.69864 1.36233 1.22503 1.23843 0.86574 0.79236 0.79518 0.82134 1.20319 1.21155 1.20353 1.47009 1.47018 1.10915 1.23293 1.21524 1.01894 0.82406 0.99371 1.19229 0.83607 0.87229 0.80413 1.69312 1.28908 1.05869 1.31956 1.18293 0.90346 0.93252 0.88999 1.20775 1.00075 0.95175 1.00274 1.20901 0.97700 0.98907 0.93563 1.20774 1.04464 0.97882 0.97033 1.20502 0.96480 0.95144 0.97903 1.20588 1.06093 0.98091 0.96922 1.20129 0.98838 0.89376 0.85236 1.45160 1.74438 1.11199 1.11181 0.95372 0.88613 0.96895 0.92627 0.93360 0.90185 0.93108 0.85834 0.86751 0.87142 0.87158 0.89916 0.92491 0.76683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.95 37.16 0.33 -3.13 16 2 C 0.27 6.73 2.65 -69.08 -0.18 6.55 16 3 H 0.08 2.28 6.78 -51.93 -0.35 1.93 16 4 C -0.53 -14.02 8.37 -34.44 -0.29 -14.30 16 5 H 0.06 1.47 7.65 -52.48 -0.40 1.07 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 8 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.57 -11.85 2.82 -176.86 -0.50 -12.35 16 13 C 0.09 1.50 9.37 59.85 0.56 2.06 16 14 C 0.65 13.19 8.05 -319.38 -2.57 10.62 16 15 N -0.62 -14.08 8.89 -11.42 -0.10 -14.18 16 16 C 0.20 4.06 6.52 -84.60 -0.55 3.51 16 17 C -0.14 -2.65 10.01 -39.17 -0.39 -3.04 16 18 C -0.09 -1.41 10.02 -39.63 -0.40 -1.81 16 19 C -0.18 -2.57 10.05 -39.45 -0.40 -2.97 16 20 C -0.08 -1.16 9.75 -39.71 -0.39 -1.55 16 21 C -0.21 -3.52 5.82 -104.16 -0.61 -4.13 16 22 C 0.19 2.61 7.19 -4.73 -0.03 2.58 16 23 N -0.78 -12.05 5.14 -62.28 -0.32 -12.37 16 24 H 0.03 0.61 6.66 -51.93 -0.35 0.26 16 25 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.32 6.43 -51.93 -0.33 0.99 16 30 H 0.05 0.66 6.96 -51.93 -0.36 0.30 16 31 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 32 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 34 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 35 H 0.08 0.87 8.13 -51.93 -0.42 0.44 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.40 5.09 7.71 -40.82 -0.31 4.78 16 LS Contribution 302.43 15.07 4.56 4.56 Total: -1.00 -30.28 302.43 -10.70 -40.98 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.94 Total: 5.48 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -5.01 Total: -3.91 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -0.29 Total: -63.04 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.28 -10.70 -40.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306075807.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.550 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds