Wall clock time and date at job start Mon Mar 30 2020 07:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47019 * 2 1 4 4 C 1.50695 * 109.46672 * 120.00390 * 2 1 3 5 5 H 1.08003 * 120.00104 * 119.99563 * 4 2 1 6 6 C 1.37877 * 120.00529 * 299.99672 * 4 2 1 7 7 N 1.31517 * 119.99521 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00562 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46839 * 59.99950 * 8 6 4 10 10 H 1.48501 * 109.47317 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47213 * 300.00449 * 8 6 4 12 12 N 1.46496 * 109.46692 * 240.00197 * 2 1 3 13 13 C 1.46501 * 120.00182 * 300.00040 * 12 2 1 14 14 C 1.37226 * 120.00171 * 120.00486 * 12 2 1 15 15 N 1.31184 * 119.83695 * 359.97438 * 14 12 2 16 16 C 1.36791 * 121.00877 * 179.85991 * 15 14 12 17 17 C 1.39606 * 120.41283 * 195.41561 * 16 15 14 18 18 C 1.37965 * 119.77309 * 179.97438 * 17 16 15 19 19 C 1.38374 * 120.29301 * 359.96373 * 18 17 16 20 20 C 1.38454 * 120.26461 * 0.04984 * 19 18 17 21 21 C 1.37678 * 119.94825 * 359.97438 * 20 19 18 22 22 C 1.50954 * 120.70049 * 179.91387 * 21 20 19 23 23 N 1.37501 * 119.84712 * 180.02562 * 14 12 2 24 24 H 1.08997 * 109.47471 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46959 * 300.00272 * 1 2 3 26 26 H 1.09003 * 109.46944 * 59.99428 * 1 2 3 27 27 H 0.97002 * 120.00172 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47173 * 270.00509 * 13 12 2 29 29 H 1.08996 * 109.47063 * 30.00054 * 13 12 2 30 30 H 1.09006 * 109.46944 * 150.00452 * 13 12 2 31 31 H 1.07999 * 120.11325 * 359.88002 * 17 16 15 32 32 H 1.07999 * 119.84812 * 179.97438 * 18 17 16 33 33 H 1.08004 * 119.87009 * 180.02562 * 19 18 17 34 34 H 1.08003 * 120.02628 * 179.97438 * 20 19 18 35 35 H 1.09005 * 109.79025 * 34.17371 * 22 21 20 36 36 H 1.08997 * 109.83855 * 273.35699 * 22 21 20 37 37 H 0.97001 * 120.70209 * 329.22076 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6531 -1.5887 1.1313 6 6 1.6992 -0.2396 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3223 -1.1198 4.0079 9 1 3.8074 -1.1193 4.0077 10 1 1.8277 -0.4195 5.2204 11 1 1.8279 -2.5200 4.0080 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0931 -1.4281 14 6 2.8072 -0.0237 -2.0995 15 7 3.1219 1.2323 -1.8889 16 6 3.9091 1.9191 -2.7720 17 6 4.5001 3.1279 -2.3998 18 6 5.2920 3.8094 -3.3008 19 6 5.5030 3.2996 -4.5697 20 6 4.9200 2.1015 -4.9462 21 6 4.1274 1.4130 -4.0556 22 6 3.4819 0.1063 -4.4488 23 7 3.2633 -0.6748 -3.2214 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7081 1.1607 3.4844 28 1 2.4156 -2.7377 -0.9718 29 1 0.6903 -2.3001 -0.9847 30 1 1.6237 -2.2851 -2.5004 31 1 4.3366 3.5289 -1.4104 32 1 5.7495 4.7448 -3.0142 33 1 6.1245 3.8386 -5.2695 34 1 5.0869 1.7074 -5.9378 35 1 4.1393 -0.4416 -5.1239 36 1 2.5271 0.2979 -4.9382 37 1 3.4374 -1.6289 -3.2039 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306075807.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:00 Heat of formation + Delta-G solvation = 52.400761 kcal Electronic energy + Delta-G solvation = -19256.799353 eV Core-core repulsion = 16419.739700 eV Total energy + Delta-G solvation = -2837.059652 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.24545 -39.14729 -36.99852 -34.70240 -34.38092 -32.20262 -30.97370 -30.32201 -27.40283 -27.17363 -26.31623 -23.78150 -22.81441 -21.96665 -19.71783 -18.89787 -18.44707 -18.02315 -16.74503 -16.47975 -16.16400 -15.57283 -15.33478 -15.18808 -14.80415 -14.72095 -14.29772 -13.92080 -13.44291 -13.30541 -13.10465 -12.97347 -12.79784 -12.67153 -12.46773 -12.35674 -12.11839 -12.05842 -11.91992 -11.12813 -10.56069 -10.40917 -10.05847 -9.62685 -9.31187 -8.15172 -7.91202 -6.25915 0.31307 0.58363 1.41418 1.43675 1.50743 1.85019 2.07493 2.43646 2.84663 3.17376 3.22657 3.87198 4.00737 4.11888 4.32843 4.40198 4.47371 4.61939 4.65342 4.75080 4.76131 4.79882 4.91942 4.99296 5.10438 5.14571 5.33768 5.40347 5.50665 5.60107 5.71424 5.74401 5.79945 5.91895 6.11873 6.21467 6.36334 6.43467 6.83707 7.07455 7.42704 7.83954 8.93162 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.025132 B = 0.005792 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.849449 B = 4832.771213 C = 5420.618673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.280 3.720 3 H 0.032 0.968 4 C -0.536 4.536 5 H 0.055 0.945 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.960 3.040 9 H -0.281 1.281 10 H -0.284 1.284 11 H -0.264 1.264 12 N -0.584 5.584 13 C 0.092 3.908 14 C 0.639 3.361 15 N -0.675 5.675 16 C 0.156 3.844 17 C -0.175 4.175 18 C -0.093 4.093 19 C -0.172 4.172 20 C -0.076 4.076 21 C -0.217 4.217 22 C 0.187 3.813 23 N -0.761 5.761 24 H 0.043 0.957 25 H 0.068 0.932 26 H 0.017 0.983 27 H 0.263 0.737 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.138 0.862 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.129 0.871 36 H 0.064 0.936 37 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.528 -3.536 -15.710 17.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.177 3.823 3 H 0.050 0.950 4 C -0.575 4.575 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.786 3.214 9 H -0.206 1.206 10 H -0.209 1.209 11 H -0.188 1.188 12 N -0.298 5.298 13 C -0.050 4.050 14 C 0.283 3.717 15 N -0.415 5.415 16 C 0.047 3.953 17 C -0.197 4.197 18 C -0.112 4.112 19 C -0.191 4.191 20 C -0.094 4.094 21 C -0.223 4.223 22 C 0.063 3.937 23 N -0.407 5.407 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.036 0.964 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.156 0.844 33 H 0.167 0.833 34 H 0.172 0.828 35 H 0.147 0.853 36 H 0.082 0.918 37 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 5.101 -2.925 -14.924 16.040 hybrid contribution 0.400 -0.735 0.897 1.227 sum 5.501 -3.660 -14.027 15.505 Atomic orbital electron populations 1.21897 0.97633 0.99729 0.99782 1.18558 0.90866 0.92873 0.79966 0.95045 1.21562 1.31671 1.12870 0.91425 0.92724 1.25648 0.95187 0.95646 1.01734 1.70013 1.37332 1.23813 1.24309 0.85584 0.78232 0.79019 0.78577 1.20648 1.20921 1.18841 1.46799 1.48078 1.12369 1.22531 1.21697 1.01590 0.79928 1.01808 1.19195 0.83893 0.87146 0.81507 1.69178 1.30401 1.07750 1.34161 1.18612 0.91825 0.94062 0.90773 1.20854 1.02393 0.96150 1.00274 1.21193 0.96694 0.99483 0.93810 1.21290 1.03472 0.97772 0.96598 1.21002 0.94655 0.94649 0.99136 1.20947 1.06165 0.99392 0.95768 1.20449 0.99965 0.88486 0.84782 1.45039 1.73470 1.11932 1.10220 0.93773 0.91337 0.96432 0.92747 0.92900 0.90702 0.89444 0.88596 0.84421 0.83325 0.82801 0.85337 0.91799 0.74941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.42 8.95 71.98 0.64 -5.77 16 2 C 0.28 14.51 2.65 44.25 0.12 14.63 16 3 H 0.03 1.94 6.78 -2.39 -0.02 1.92 16 4 C -0.54 -29.31 8.37 25.60 0.21 -29.10 16 5 H 0.05 2.92 7.65 -2.91 -0.02 2.90 16 6 C 0.02 0.96 5.30 84.65 0.45 1.41 16 7 N -0.92 -53.18 11.32 21.45 0.24 -52.94 16 8 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 12 N -0.58 -24.65 2.82 -713.45 -2.01 -26.66 16 13 C 0.09 2.90 9.37 127.77 1.20 4.10 16 14 C 0.64 26.26 8.05 260.29 2.09 28.35 16 15 N -0.68 -32.15 8.89 -190.06 -1.69 -33.84 16 16 C 0.16 6.45 6.52 39.05 0.25 6.71 16 17 C -0.18 -6.89 10.01 22.54 0.23 -6.66 16 18 C -0.09 -2.78 10.02 22.24 0.22 -2.56 16 19 C -0.17 -4.24 10.05 22.35 0.22 -4.02 16 20 C -0.08 -1.85 9.75 22.19 0.22 -1.64 16 21 C -0.22 -6.83 5.82 -19.57 -0.11 -6.94 16 22 C 0.19 4.55 7.19 85.60 0.62 5.17 16 23 N -0.76 -22.20 5.14 -350.94 -1.81 -24.00 16 24 H 0.04 1.94 6.66 -2.39 -0.02 1.93 16 25 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.26 14.58 8.31 -92.71 -0.77 13.80 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 2.40 6.43 -2.39 -0.02 2.38 16 30 H 0.09 2.05 6.96 -2.38 -0.02 2.03 16 31 H 0.10 4.09 8.06 -2.91 -0.02 4.07 16 32 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 33 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 35 H 0.13 1.97 8.13 -2.38 -0.02 1.95 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.41 9.38 7.71 -92.71 -0.71 8.67 16 Total: -1.00 -70.84 302.43 3.49 -67.35 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.36 Total: 20.77 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 6.36 Total: 3.67 kcal Atomic # 7 Polarization: -132.18 SS G_CDS: -5.26 Total: -137.44 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -70.84 3.49 -67.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306075807.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.751 kcal (2) G-P(sol) polarization free energy of solvation -70.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds