Wall clock time and date at job start Mon Mar 30 2020 06:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31706 * 119.74732 * 2 1 4 4 C 1.32563 * 121.64447 * 179.97438 * 3 2 1 5 5 N 1.38590 * 119.53532 * 180.02562 * 4 3 2 6 6 C 1.46505 * 119.99566 * 348.44083 * 5 4 3 7 7 C 1.50700 * 109.46870 * 90.00611 * 6 5 4 8 8 H 1.07995 * 120.00323 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99752 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00393 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99976 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47010 * 59.99839 * 11 9 7 13 13 H 1.48500 * 109.47446 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47433 * 300.00278 * 11 9 7 15 15 C 1.46490 * 120.00272 * 168.44757 * 5 4 3 16 16 C 1.52998 * 109.47525 * 120.28063 * 15 5 4 17 17 C 1.53003 * 109.47213 * 240.27860 * 15 5 4 18 18 C 1.39356 * 120.93183 * 359.72415 * 4 3 2 19 19 C 1.36888 * 119.38939 * 0.57847 * 18 4 3 20 20 C 1.39577 * 119.73899 * 180.02562 * 2 1 3 21 21 C 1.43198 * 120.48828 * 0.02562 * 20 2 1 22 22 N 3.48992 * 80.38480 * 180.02562 * 2 1 3 23 23 H 1.08997 * 109.46593 * 269.97763 * 1 2 3 24 24 H 1.08998 * 109.46762 * 29.97692 * 1 2 3 25 25 H 1.08997 * 109.47146 * 149.97772 * 1 2 3 26 26 H 1.09002 * 109.47085 * 210.00498 * 6 5 4 27 27 H 1.09002 * 109.47035 * 330.00204 * 6 5 4 28 28 H 0.97002 * 120.00239 * 179.97438 * 10 9 7 29 29 H 1.09001 * 109.47271 * 0.27533 * 15 5 4 30 30 H 1.08991 * 109.47294 * 59.99582 * 16 15 5 31 31 H 1.09000 * 109.47036 * 180.02562 * 16 15 5 32 32 H 1.09003 * 109.46549 * 299.99585 * 16 15 5 33 33 H 1.09001 * 109.46928 * 59.99802 * 17 15 5 34 34 H 1.09000 * 109.47450 * 179.97438 * 17 15 5 35 35 H 1.09002 * 109.47194 * 300.00269 * 17 15 5 36 36 H 1.08004 * 120.30896 * 180.28541 * 18 4 3 37 37 H 1.07995 * 120.76094 * 179.70773 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1606 1.1435 0.0000 4 6 3.4855 1.1874 0.0005 5 7 4.1284 2.4151 0.0010 6 6 3.3670 3.6407 -0.2532 7 6 2.8533 4.1927 1.0516 8 1 3.0718 3.6816 1.9775 9 6 2.1045 5.3504 1.0632 10 7 1.8389 5.9731 -0.0643 11 14 1.4672 6.0343 2.6804 12 1 2.6129 6.3390 3.5748 13 1 0.6966 7.2773 2.4229 14 1 0.5860 5.0304 3.3295 15 6 5.5692 2.4875 0.2556 16 6 6.2689 3.1205 -0.9487 17 6 5.8250 3.3400 1.5001 18 6 4.2410 0.0164 0.0068 19 6 3.6030 -1.1947 0.0005 20 6 2.1994 -1.2119 -0.0005 21 6 1.4884 -2.4549 -0.0016 22 7 0.9241 -3.4409 -0.0015 23 1 -0.3632 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 4.0132 4.3776 -0.7302 27 1 2.5258 3.4164 -0.9092 28 1 1.3117 6.7874 -0.0561 29 1 5.9606 1.4830 0.4166 30 1 5.8775 4.1249 -1.1097 31 1 7.3410 3.1738 -0.7594 32 1 6.0866 2.5131 -1.8353 33 1 5.3266 2.8890 2.3582 34 1 6.8971 3.3934 1.6899 35 1 5.4336 4.3445 1.3392 36 1 5.3199 0.0639 0.0118 37 1 4.1666 -2.1159 0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310241194.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:12 Heat of formation + Delta-G solvation = 66.374764 kcal Electronic energy + Delta-G solvation = -19139.019951 eV Core-core repulsion = 16302.566257 eV Total energy + Delta-G solvation = -2836.453694 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.14711 -37.48476 -36.02796 -33.05315 -32.67943 -32.40174 -30.06183 -28.03433 -26.84629 -26.59528 -23.61064 -22.73150 -21.54321 -19.69123 -18.29025 -16.95345 -16.49811 -16.29927 -14.70129 -14.55423 -14.19855 -14.08375 -13.59847 -13.50192 -13.00498 -12.88260 -12.77741 -12.55774 -12.36730 -12.11665 -11.97755 -11.86813 -11.65246 -11.59679 -11.19382 -11.06452 -10.89491 -10.61866 -10.37328 -10.09393 -9.78874 -9.45720 -8.97216 -8.82673 -8.44001 -6.96749 -6.04241 -4.08587 1.24446 1.70131 2.97283 3.29462 3.34705 3.35695 3.39760 3.55332 4.33132 4.34208 4.42255 4.74073 4.97526 5.14734 5.27127 5.30667 5.40713 5.49500 5.63935 5.81250 5.86529 5.89827 5.93443 6.04526 6.14027 6.23612 6.30481 6.32344 6.43283 6.54102 6.71298 6.91168 7.03722 7.38697 7.70771 7.82747 7.90031 8.13085 8.21187 8.70962 8.94445 9.54625 11.01915 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.017378 B = 0.007037 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.858041 B = 3978.098925 C = 5090.215855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.241 3.759 3 N -0.516 5.516 4 C 0.447 3.553 5 N -0.567 5.567 6 C 0.251 3.749 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.062 3.938 10 N -0.897 5.897 11 Si 0.892 3.108 12 H -0.279 1.279 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.141 3.859 16 C -0.162 4.162 17 C -0.157 4.157 18 C -0.267 4.267 19 C 0.016 3.984 20 C -0.194 4.194 21 C 0.284 3.716 22 N -0.460 5.460 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.034 0.966 27 H 0.045 0.955 28 H 0.263 0.737 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.135 0.865 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.968 -7.796 -0.574 10.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.095 3.905 3 N -0.233 5.233 4 C 0.207 3.793 5 N -0.271 5.271 6 C 0.132 3.868 7 C -0.551 4.551 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.536 5.536 11 Si 0.720 3.280 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.037 3.963 16 C -0.221 4.221 17 C -0.215 4.215 18 C -0.292 4.292 19 C -0.011 4.011 20 C -0.204 4.204 21 C -0.030 4.030 22 N -0.138 5.138 23 H 0.101 0.899 24 H 0.106 0.894 25 H 0.087 0.913 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.153 0.847 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.724 -8.063 -0.660 9.910 hybrid contribution 0.308 0.150 0.965 1.024 sum 6.032 -7.913 0.306 9.955 Atomic orbital electron populations 1.20817 0.89046 1.03482 1.03508 1.21081 0.96251 0.85984 0.87228 1.67459 1.07554 1.27242 1.21032 1.18640 0.88224 0.86360 0.86103 1.47459 1.06872 1.04909 1.67840 1.19350 0.91104 0.79173 0.97172 1.21331 1.32657 1.07997 0.93107 0.92491 1.24876 0.96012 0.96833 0.96223 1.69907 1.39432 1.18676 1.25571 0.86653 0.79041 0.78271 0.83985 1.20426 1.21345 1.20267 1.21085 0.80152 0.99663 0.95421 1.22177 0.99689 1.02463 0.97729 1.22160 0.99840 1.02640 0.96892 1.21088 1.00845 0.91697 1.15607 1.20808 0.91790 0.97844 0.90691 1.16431 0.92879 0.87545 1.23572 1.25484 0.92859 0.92393 0.92234 1.81188 1.09055 1.11293 1.12247 0.89870 0.89368 0.91293 0.94815 0.93720 0.92768 0.90205 0.91225 0.92053 0.92722 0.92653 0.93019 0.89982 0.84725 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.78 36.01 0.35 -1.25 16 2 C 0.24 4.04 6.82 -82.14 -0.56 3.48 16 3 N -0.52 -10.20 9.16 -8.36 -0.08 -10.28 16 4 C 0.45 8.19 7.31 -155.20 -1.13 7.05 16 5 N -0.57 -10.76 2.49 -167.63 -0.42 -11.17 16 6 C 0.25 5.87 4.53 -5.19 -0.02 5.84 16 7 C -0.51 -13.15 7.83 -34.44 -0.27 -13.42 16 8 H 0.06 1.49 7.63 -52.49 -0.40 1.09 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.90 -25.10 13.29 55.43 0.74 -24.36 16 11 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 15 C 0.14 2.12 3.15 -67.93 -0.21 1.91 16 16 C -0.16 -2.19 9.17 37.16 0.34 -1.85 16 17 C -0.16 -2.44 8.48 37.16 0.32 -2.13 16 18 C -0.27 -3.85 9.21 -39.65 -0.37 -4.22 16 19 C 0.02 0.21 9.85 -39.27 -0.39 -0.18 16 20 C -0.19 -2.90 5.75 -106.67 -0.61 -3.51 16 21 C 0.28 4.29 13.82 -22.47 -0.31 3.98 16 22 N -0.46 -7.57 18.54 41.84 0.78 -6.80 16 23 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.07 0.90 7.08 -51.93 -0.37 0.53 16 26 H 0.03 0.82 6.41 -51.93 -0.33 0.49 16 27 H 0.04 1.18 7.57 -51.93 -0.39 0.78 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.08 1.01 5.36 -51.93 -0.28 0.73 16 30 H 0.07 1.08 6.65 -51.93 -0.35 0.74 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.51 6.92 -51.93 -0.36 1.15 16 36 H 0.14 1.60 5.86 -52.48 -0.31 1.29 16 37 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 314.18 15.07 4.73 4.73 Total: -1.00 -28.80 314.18 -7.11 -35.91 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.88 Total: -1.22 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.97 Total: -2.72 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 1.02 Total: -52.61 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.80 -7.11 -35.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310241194.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.287 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds