Wall clock time and date at job start Mon Mar 30 2020 06:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31706 * 119.74732 * 2 1 4 4 C 1.32563 * 121.64447 * 179.97438 * 3 2 1 5 5 N 1.38590 * 119.53532 * 180.02562 * 4 3 2 6 6 C 1.46505 * 119.99566 * 348.44083 * 5 4 3 7 7 C 1.50700 * 109.46870 * 90.00611 * 6 5 4 8 8 H 1.07995 * 120.00323 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99752 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00393 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99976 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47010 * 59.99839 * 11 9 7 13 13 H 1.48500 * 109.47446 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47433 * 300.00278 * 11 9 7 15 15 C 1.46490 * 120.00272 * 168.44757 * 5 4 3 16 16 C 1.52998 * 109.47525 * 120.28063 * 15 5 4 17 17 C 1.53003 * 109.47213 * 240.27860 * 15 5 4 18 18 C 1.39356 * 120.93183 * 359.72415 * 4 3 2 19 19 C 1.36888 * 119.38939 * 0.57847 * 18 4 3 20 20 C 1.39577 * 119.73899 * 180.02562 * 2 1 3 21 21 C 1.43198 * 120.48828 * 0.02562 * 20 2 1 22 22 N 3.48992 * 80.38480 * 180.02562 * 2 1 3 23 23 H 1.08997 * 109.46593 * 269.97763 * 1 2 3 24 24 H 1.08998 * 109.46762 * 29.97692 * 1 2 3 25 25 H 1.08997 * 109.47146 * 149.97772 * 1 2 3 26 26 H 1.09002 * 109.47085 * 210.00498 * 6 5 4 27 27 H 1.09002 * 109.47035 * 330.00204 * 6 5 4 28 28 H 0.97002 * 120.00239 * 179.97438 * 10 9 7 29 29 H 1.09001 * 109.47271 * 0.27533 * 15 5 4 30 30 H 1.08991 * 109.47294 * 59.99582 * 16 15 5 31 31 H 1.09000 * 109.47036 * 180.02562 * 16 15 5 32 32 H 1.09003 * 109.46549 * 299.99585 * 16 15 5 33 33 H 1.09001 * 109.46928 * 59.99802 * 17 15 5 34 34 H 1.09000 * 109.47450 * 179.97438 * 17 15 5 35 35 H 1.09002 * 109.47194 * 300.00269 * 17 15 5 36 36 H 1.08004 * 120.30896 * 180.28541 * 18 4 3 37 37 H 1.07995 * 120.76094 * 179.70773 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1606 1.1435 0.0000 4 6 3.4855 1.1874 0.0005 5 7 4.1284 2.4151 0.0010 6 6 3.3670 3.6407 -0.2532 7 6 2.8533 4.1927 1.0516 8 1 3.0718 3.6816 1.9775 9 6 2.1045 5.3504 1.0632 10 7 1.8389 5.9731 -0.0643 11 14 1.4672 6.0343 2.6804 12 1 2.6129 6.3390 3.5748 13 1 0.6966 7.2773 2.4229 14 1 0.5860 5.0304 3.3295 15 6 5.5692 2.4875 0.2556 16 6 6.2689 3.1205 -0.9487 17 6 5.8250 3.3400 1.5001 18 6 4.2410 0.0164 0.0068 19 6 3.6030 -1.1947 0.0005 20 6 2.1994 -1.2119 -0.0005 21 6 1.4884 -2.4549 -0.0016 22 7 0.9241 -3.4409 -0.0015 23 1 -0.3632 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 4.0132 4.3776 -0.7302 27 1 2.5258 3.4164 -0.9092 28 1 1.3117 6.7874 -0.0561 29 1 5.9606 1.4830 0.4166 30 1 5.8775 4.1249 -1.1097 31 1 7.3410 3.1738 -0.7594 32 1 6.0866 2.5131 -1.8353 33 1 5.3266 2.8890 2.3582 34 1 6.8971 3.3934 1.6899 35 1 5.4336 4.3445 1.3392 36 1 5.3199 0.0639 0.0118 37 1 4.1666 -2.1159 0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310241194.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:11 Heat of formation + Delta-G solvation = 51.321189 kcal Electronic energy + Delta-G solvation = -19139.672723 eV Core-core repulsion = 16302.566257 eV Total energy + Delta-G solvation = -2837.106466 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.42597 -38.81159 -37.30739 -34.88837 -33.89648 -33.77582 -31.53341 -29.51563 -28.18953 -27.90615 -25.27527 -24.06281 -22.88966 -20.98754 -19.51520 -18.53228 -18.22516 -17.66583 -16.51013 -15.87252 -15.49545 -15.34478 -14.90670 -14.80030 -14.32627 -14.15862 -14.05003 -13.98023 -13.79486 -13.39416 -13.25270 -13.18973 -13.08535 -12.91344 -12.74076 -12.69602 -12.39476 -12.22527 -12.06024 -11.57301 -11.40729 -10.81055 -10.51051 -10.37831 -10.12764 -8.44999 -8.00251 -6.18633 -0.01427 0.54241 1.40306 1.42508 1.49076 1.74623 2.12950 2.22656 2.46613 3.09195 3.10016 3.20903 3.49886 3.87529 3.99835 4.11258 4.27019 4.33816 4.51041 4.67095 4.70426 4.73783 4.85169 4.89444 4.96971 5.06693 5.08504 5.17085 5.24633 5.26383 5.30571 5.51365 5.58788 5.67415 5.80693 6.18767 6.30313 6.60147 6.64169 6.91418 7.41608 7.50045 8.96413 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.017378 B = 0.007037 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.858041 B = 3978.098925 C = 5090.215855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.224 3.776 3 N -0.565 5.565 4 C 0.421 3.579 5 N -0.581 5.581 6 C 0.275 3.725 7 C -0.506 4.506 8 H 0.048 0.952 9 C 0.012 3.988 10 N -0.930 5.930 11 Si 0.949 3.051 12 H -0.269 1.269 13 H -0.285 1.285 14 H -0.279 1.279 15 C 0.136 3.864 16 C -0.156 4.156 17 C -0.152 4.152 18 C -0.252 4.252 19 C 0.029 3.971 20 C -0.185 4.185 21 C 0.301 3.699 22 N -0.479 5.479 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.018 0.982 27 H 0.006 0.994 28 H 0.262 0.738 29 H 0.116 0.884 30 H 0.037 0.963 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.169 0.831 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.845 -9.916 0.204 13.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.079 3.921 3 N -0.283 5.283 4 C 0.183 3.817 5 N -0.287 5.287 6 C 0.153 3.847 7 C -0.545 4.545 8 H 0.066 0.934 9 C -0.186 4.186 10 N -0.572 5.572 11 Si 0.775 3.225 12 H -0.194 1.194 13 H -0.211 1.211 14 H -0.205 1.205 15 C 0.034 3.966 16 C -0.214 4.214 17 C -0.210 4.210 18 C -0.277 4.277 19 C 0.002 3.998 20 C -0.195 4.195 21 C -0.012 4.012 22 N -0.156 5.156 23 H 0.108 0.892 24 H 0.094 0.906 25 H 0.101 0.899 26 H 0.036 0.964 27 H 0.024 0.976 28 H 0.071 0.929 29 H 0.133 0.867 30 H 0.057 0.943 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.107 0.893 35 H 0.062 0.938 36 H 0.186 0.814 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.606 -10.229 0.129 12.748 hybrid contribution -0.279 0.693 0.708 1.029 sum 7.328 -9.536 0.837 12.055 Atomic orbital electron populations 1.20832 0.88295 1.03526 1.03920 1.21329 0.97001 0.86081 0.87716 1.67362 1.09148 1.29181 1.22603 1.19069 0.88333 0.87234 0.87070 1.47319 1.08092 1.03779 1.69487 1.18664 0.90000 0.80872 0.95143 1.21536 1.31740 1.07534 0.93672 0.93360 1.25603 0.96607 0.97475 0.98963 1.70022 1.40589 1.19175 1.27364 0.85757 0.78606 0.77470 0.80664 1.19363 1.21093 1.20511 1.21399 0.78121 1.01547 0.95566 1.22124 1.01377 1.00495 0.97355 1.22096 1.01826 1.00310 0.96730 1.21332 1.02190 0.90274 1.13919 1.21254 0.90995 0.99090 0.88432 1.16494 0.93863 0.86613 1.22572 1.25332 0.92288 0.91976 0.91601 1.81223 1.09554 1.12039 1.12810 0.89244 0.90627 0.89877 0.96382 0.97568 0.92927 0.86652 0.94337 0.88669 0.92258 0.94096 0.89342 0.93792 0.81408 0.80860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.14 9.78 71.24 0.70 -2.45 16 2 C 0.22 7.39 6.82 42.90 0.29 7.68 16 3 N -0.56 -22.62 9.16 -180.36 -1.65 -24.27 16 4 C 0.42 15.09 7.31 133.21 0.97 16.07 16 5 N -0.58 -22.06 2.49 -684.27 -1.70 -23.77 16 6 C 0.27 13.44 4.53 85.63 0.39 13.82 16 7 C -0.51 -26.89 7.83 25.60 0.20 -26.69 16 8 H 0.05 2.60 7.63 -2.91 -0.02 2.58 16 9 C 0.01 0.64 5.46 84.65 0.46 1.10 16 10 N -0.93 -54.08 13.29 21.45 0.28 -53.80 16 11 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 15 C 0.14 3.85 3.15 44.99 0.14 3.99 16 16 C -0.16 -3.94 9.17 71.98 0.66 -3.28 16 17 C -0.15 -4.54 8.48 71.98 0.61 -3.93 16 18 C -0.25 -6.40 9.21 22.22 0.20 -6.20 16 19 C 0.03 0.65 9.85 22.47 0.22 0.87 16 20 C -0.19 -5.09 5.75 -21.19 -0.12 -5.21 16 21 C 0.30 8.35 13.82 88.33 1.22 9.57 16 22 N -0.48 -14.65 18.54 19.00 0.35 -14.30 16 23 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.08 2.11 7.08 -2.39 -0.02 2.09 16 26 H 0.02 0.94 6.41 -2.39 -0.02 0.92 16 27 H 0.01 0.35 7.57 -2.39 -0.02 0.33 16 28 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.12 2.43 5.36 -2.39 -0.01 2.41 16 30 H 0.04 1.21 6.65 -2.39 -0.02 1.19 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.04 1.64 6.92 -2.39 -0.02 1.62 16 36 H 0.17 3.07 5.86 -2.91 -0.02 3.06 16 37 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -65.38 314.18 6.33 -59.05 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 1.08 Total: 5.90 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 5.95 Total: 5.36 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -2.72 Total: -116.14 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -65.38 6.33 -59.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310241194.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.369 kcal (2) G-P(sol) polarization free energy of solvation -65.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds