Wall clock time and date at job start Mon Mar 30 2020 07:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46504 * 120.00381 * 269.99975 * 3 2 1 5 5 C 1.50704 * 109.46773 * 90.00257 * 4 3 2 6 6 H 1.07998 * 119.99721 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99850 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99692 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99728 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47540 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46847 * 120.00345 * 9 7 5 12 12 H 1.48508 * 109.47264 * 239.99931 * 9 7 5 13 13 C 1.37225 * 119.99876 * 90.00484 * 3 2 1 14 14 N 1.31186 * 119.84301 * 179.72516 * 13 3 2 15 15 C 1.36793 * 121.00419 * 179.60070 * 14 13 3 16 16 C 1.39597 * 120.46828 * 195.71466 * 15 14 13 17 17 C 1.37955 * 119.77811 * 180.11129 * 16 15 14 18 18 C 1.38383 * 120.29242 * 0.02562 * 17 16 15 19 19 C 1.38456 * 120.26226 * 0.03869 * 18 17 16 20 20 C 1.37682 * 119.94910 * 359.95390 * 19 18 17 21 21 C 1.50955 * 120.70635 * 179.97438 * 20 19 18 22 22 N 1.37498 * 119.84012 * 359.97438 * 13 3 2 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 28 28 H 1.08992 * 109.47334 * 209.99920 * 4 3 2 29 29 H 1.08994 * 109.46680 * 330.00544 * 4 3 2 30 30 H 0.96996 * 119.99637 * 179.97438 * 8 7 5 31 31 H 1.08003 * 120.11017 * 0.09617 * 16 15 14 32 32 H 1.08001 * 119.85440 * 179.97438 * 17 16 15 33 33 H 1.07998 * 119.87253 * 180.02562 * 18 17 16 34 34 H 1.07995 * 120.02342 * 179.97438 * 19 18 17 35 35 H 1.08999 * 109.79675 * 34.14315 * 21 20 19 36 36 H 1.09001 * 109.84156 * 273.31483 * 21 20 19 37 37 H 0.96995 * 120.71627 * 329.23253 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 1.0065 2.7824 -1.7036 6 1 0.1158 2.7254 -1.0956 7 6 0.9947 3.5050 -2.8778 8 7 2.0793 3.5739 -3.6184 9 14 -0.5622 4.3850 -3.4172 10 1 -1.6345 4.1521 -2.4166 11 1 -0.2950 5.8417 -3.5259 12 1 -0.9946 3.8612 -4.7379 13 6 2.2470 2.0281 1.1884 14 7 2.6894 3.2631 1.1849 15 6 2.9178 3.9331 2.3554 16 6 3.0687 5.3209 2.3588 17 6 3.3009 5.9819 3.5472 18 6 3.3852 5.2753 4.7340 19 6 3.2380 3.8986 4.7385 20 6 3.0058 3.2284 3.5584 21 6 2.8432 1.7277 3.5434 22 7 2.0164 1.3769 2.3772 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.0642 2.7986 -1.1384 29 1 2.5505 1.3453 -2.0283 30 1 2.0709 4.0820 -4.4446 31 1 3.0040 5.8752 1.4341 32 1 3.4182 7.0555 3.5512 33 1 3.5668 5.7998 5.6605 34 1 3.3049 3.3510 5.6669 35 1 2.3484 1.4008 4.4580 36 1 3.8198 1.2506 3.4613 37 1 1.3245 0.7005 2.4456 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310244175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:31 Heat of formation + Delta-G solvation = 63.178541 kcal Electronic energy + Delta-G solvation = -19283.757313 eV Core-core repulsion = 16447.165020 eV Total energy + Delta-G solvation = -2836.592293 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.90249 -37.75930 -35.30947 -33.15314 -32.61737 -30.73705 -30.46910 -28.69429 -26.82702 -25.12151 -23.32102 -22.72146 -21.49163 -20.85107 -18.43626 -17.40729 -16.86363 -16.37556 -15.33014 -14.98813 -14.65794 -14.18195 -13.99805 -13.79882 -13.38890 -13.26699 -12.93468 -12.66050 -12.16018 -12.01152 -11.66009 -11.47939 -11.21916 -11.07946 -10.96275 -10.71783 -10.65256 -10.52974 -10.01926 -9.54918 -9.11587 -8.64983 -8.39933 -8.35675 -7.84750 -6.52117 -5.98445 -4.03191 1.65225 1.86055 3.23487 3.31290 3.39560 3.42552 3.48257 4.08464 4.47204 4.57967 5.01327 5.22636 5.24122 5.34295 5.41600 5.50503 5.54496 5.61849 5.69708 5.72025 5.92908 6.01851 6.08971 6.20230 6.37637 6.62666 6.67049 6.71396 6.84409 6.98341 7.05248 7.09447 7.38865 7.46433 7.72645 7.89533 8.01365 8.27839 8.46101 8.98005 9.31395 9.60397 11.07724 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.018899 B = 0.006903 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.177869 B = 4055.503705 C = 5068.694458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.118 3.882 3 N -0.575 5.575 4 C 0.259 3.741 5 C -0.516 4.516 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.285 1.285 13 C 0.652 3.348 14 N -0.609 5.609 15 C 0.200 3.800 16 C -0.139 4.139 17 C -0.093 4.093 18 C -0.181 4.181 19 C -0.082 4.082 20 C -0.211 4.211 21 C 0.189 3.811 22 N -0.777 5.777 23 H 0.055 0.945 24 H 0.046 0.954 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.031 0.969 30 H 0.261 0.739 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.483 -5.472 13.539 14.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.007 4.007 3 N -0.288 5.288 4 C 0.140 3.860 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.211 1.211 13 C 0.297 3.703 14 N -0.345 5.345 15 C 0.090 3.910 16 C -0.160 4.160 17 C -0.112 4.112 18 C -0.201 4.201 19 C -0.101 4.101 20 C -0.217 4.217 21 C 0.064 3.936 22 N -0.421 5.421 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.833 -4.938 12.595 13.554 hybrid contribution -1.373 -0.042 0.426 1.438 sum -0.540 -4.980 13.020 13.951 Atomic orbital electron populations 1.22288 0.96295 1.01021 1.03474 1.21369 0.94392 0.82911 1.01982 1.46965 1.65568 1.11894 1.04396 1.19390 0.97911 0.92293 0.76361 1.21436 0.97383 1.30819 1.05848 0.92515 1.24883 0.96257 0.96319 0.96537 1.69934 1.27323 1.41839 1.14333 0.86514 0.83391 0.79713 0.78186 1.19997 1.20941 1.21145 1.19155 0.85673 0.85568 0.79908 1.69401 1.35863 1.04718 1.24551 1.18329 0.92024 0.93289 0.87396 1.20794 1.04447 0.92603 0.98172 1.20902 0.98715 0.99109 0.92448 1.20771 1.07776 0.93970 0.97574 1.20496 0.99168 0.94312 0.96167 1.20612 1.10612 0.95642 0.94818 1.20136 0.94334 0.91737 0.87375 1.45228 1.41631 1.46179 1.09087 0.92614 0.93526 0.90262 0.92174 0.90050 0.92639 0.95130 0.92884 0.85759 0.86781 0.87181 0.87204 0.89998 0.92498 0.76786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 10.19 37.16 0.38 -2.15 16 2 C 0.12 1.83 5.87 -4.04 -0.02 1.80 16 3 N -0.57 -11.73 2.52 -176.65 -0.45 -12.18 16 4 C 0.26 6.52 5.21 -5.19 -0.03 6.49 16 5 C -0.52 -14.08 8.92 -34.44 -0.31 -14.39 16 6 H 0.06 1.57 7.42 -52.49 -0.39 1.18 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 13 C 0.65 13.26 8.04 -319.39 -2.57 10.69 16 14 N -0.61 -14.05 9.16 -11.42 -0.10 -14.15 16 15 C 0.20 4.12 6.52 -84.60 -0.55 3.57 16 16 C -0.14 -2.69 10.01 -39.18 -0.39 -3.08 16 17 C -0.09 -1.47 10.02 -39.63 -0.40 -1.87 16 18 C -0.18 -2.63 10.05 -39.45 -0.40 -3.02 16 19 C -0.08 -1.20 9.75 -39.70 -0.39 -1.59 16 20 C -0.21 -3.58 5.82 -104.16 -0.61 -4.19 16 21 C 0.19 2.64 7.19 -4.69 -0.03 2.60 16 22 N -0.78 -12.15 5.15 -62.22 -0.32 -12.47 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.68 7.78 -51.93 -0.40 0.28 16 25 H 0.08 1.41 7.26 -51.93 -0.38 1.04 16 26 H 0.06 0.77 6.96 -51.93 -0.36 0.40 16 27 H 0.08 1.23 7.89 -51.93 -0.41 0.82 16 28 H 0.06 1.58 7.34 -51.93 -0.38 1.19 16 29 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.12 2.49 8.06 -52.48 -0.42 2.06 16 32 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 33 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.40 5.17 7.32 -40.82 -0.30 4.87 16 LS Contribution 308.86 15.07 4.65 4.65 Total: -1.00 -31.54 308.86 -11.04 -42.58 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.13 Total: 3.74 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -5.41 Total: -3.49 kcal Atomic # 7 Polarization: -64.10 SS G_CDS: -0.13 Total: -64.23 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.54 -11.04 -42.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310244175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.759 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds