Wall clock time and date at job start Mon Mar 30 2020 07:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 112.85020 * 2 1 4 4 N 1.46502 * 109.47482 * 48.79826 * 3 2 1 5 5 C 1.46499 * 119.99658 * 90.00117 * 4 3 2 6 6 C 1.50701 * 109.46992 * 90.00121 * 5 4 3 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99594 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99875 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47061 * 90.00257 * 10 8 6 12 12 H 1.48497 * 109.46906 * 209.99430 * 10 8 6 13 13 H 1.48498 * 109.47403 * 329.99876 * 10 8 6 14 14 C 1.39668 * 120.00128 * 270.00519 * 4 3 2 15 15 C 1.38914 * 120.07575 * 359.72048 * 14 4 3 16 16 C 1.38107 * 119.92457 * 179.77396 * 15 14 4 17 17 C 1.38282 * 120.07550 * 0.50482 * 16 15 14 18 18 C 1.38292 * 120.15077 * 359.74621 * 17 16 15 19 19 C 1.38106 * 120.07016 * 0.02562 * 18 17 16 20 20 C 1.53785 * 113.68837 * 131.26149 * 2 1 3 21 21 C 1.53789 * 87.07737 * 89.12939 * 20 2 1 22 22 C 1.53774 * 87.08148 * 25.43156 * 21 20 2 23 23 H 1.09000 * 109.46822 * 69.66971 * 1 2 3 24 24 H 1.09005 * 109.46949 * 189.66990 * 1 2 3 25 25 H 1.08998 * 109.46784 * 309.67364 * 1 2 3 26 26 H 1.08998 * 109.46784 * 288.80100 * 3 2 1 27 27 H 1.08994 * 109.46982 * 168.80412 * 3 2 1 28 28 H 1.09002 * 109.47391 * 330.00112 * 5 4 3 29 29 H 1.09001 * 109.46813 * 210.00168 * 5 4 3 30 30 H 0.97002 * 119.99739 * 180.02562 * 9 8 6 31 31 H 1.07998 * 120.04036 * 0.02562 * 15 14 4 32 32 H 1.08001 * 119.96373 * 180.25786 * 16 15 14 33 33 H 1.08001 * 119.92698 * 179.73240 * 17 16 15 34 34 H 1.07997 * 119.96554 * 179.97438 * 18 17 16 35 35 H 1.08004 * 120.03710 * 179.97438 * 19 18 17 36 36 H 1.08994 * 113.61421 * 203.67286 * 20 2 1 37 37 H 1.08997 * 113.61358 * 334.58283 * 20 2 1 38 38 H 1.09004 * 113.61133 * 270.88076 * 21 20 2 39 39 H 1.09001 * 113.69078 * 139.99431 * 21 20 2 40 40 H 1.09000 * 113.61355 * 220.02001 * 22 21 20 41 41 H 1.09001 * 113.61703 * 89.11670 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 7 1.4755 2.2133 1.0392 5 6 2.0308 2.2443 2.3945 6 6 3.0289 3.3682 2.5028 7 1 3.2292 3.9968 1.6477 8 6 3.6857 3.5946 3.6938 9 7 4.5563 4.5757 3.7884 10 14 3.3387 2.5078 5.1729 11 1 4.2695 1.3507 5.1662 12 1 3.5324 3.2915 6.4193 13 1 1.9386 2.0171 5.1092 14 6 0.3275 2.9496 0.7379 15 6 -0.1971 2.9259 -0.5482 16 6 -1.3351 3.6514 -0.8415 17 6 -1.9462 4.4092 0.1406 18 6 -1.4236 4.4392 1.4206 19 6 -0.2886 3.7123 1.7219 20 6 2.1479 -0.9288 1.0586 21 6 2.0951 -2.0420 -0.0011 22 6 2.1461 -0.9282 -1.0601 23 1 -0.3633 0.3570 -0.9637 24 1 -0.3633 -1.0131 0.1726 25 1 -0.3633 0.6561 0.7910 26 1 1.9601 1.8733 -0.9728 27 1 3.1942 1.3532 0.1995 28 1 2.5263 1.2967 2.6059 29 1 1.2266 2.4020 3.1131 30 1 5.0186 4.7348 4.6262 31 1 0.2819 2.3375 -1.3167 32 1 -1.7459 3.6301 -1.8401 33 1 -2.8335 4.9790 -0.0926 34 1 -1.9030 5.0323 2.1852 35 1 0.1193 3.7365 2.7217 36 1 3.1609 -0.6487 1.3474 37 1 1.4973 -1.1092 1.9143 38 1 1.1595 -2.6013 -0.0004 39 1 2.9738 -2.6869 -0.0030 40 1 1.4940 -1.1081 -1.9148 41 1 3.1586 -0.6478 -1.3505 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310422494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:15 Heat of formation + Delta-G solvation = 50.008558 kcal Electronic energy + Delta-G solvation = -20007.910985 eV Core-core repulsion = 17274.287942 eV Total energy + Delta-G solvation = -2733.623043 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.84996 -38.36064 -35.38212 -32.64543 -30.73497 -29.48778 -29.25557 -27.69452 -25.62785 -25.30762 -22.95532 -22.12597 -21.18134 -19.65792 -17.98514 -17.00282 -16.90242 -15.47789 -15.07518 -14.86567 -14.68798 -14.08159 -13.99395 -13.44164 -13.10127 -12.78236 -12.71565 -12.47658 -12.26882 -11.98108 -11.71133 -11.55750 -11.27191 -11.11411 -10.93339 -10.76823 -10.63993 -10.52313 -10.26146 -10.16015 -9.88934 -9.69109 -9.54082 -8.88396 -8.65210 -8.28033 -6.39151 -6.13712 -4.13069 2.08307 2.30095 3.20943 3.29516 3.30548 3.99770 4.32719 4.55108 4.77348 4.83423 4.93047 5.01395 5.17484 5.47423 5.51207 5.53785 5.66589 5.74681 5.76800 5.85451 5.92139 6.00154 6.03669 6.06242 6.16751 6.22960 6.25451 6.34952 6.38894 6.42227 6.56233 6.60610 6.73353 6.77902 6.82818 7.08621 7.11717 7.26764 7.54662 7.57795 8.09461 8.38947 8.53927 8.94654 9.46715 10.99424 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.012952 B = 0.009554 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.282490 B = 2930.141703 C = 4526.717462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.100 4.100 3 C 0.141 3.859 4 N -0.600 5.600 5 C 0.223 3.777 6 C -0.532 4.532 7 H 0.076 0.924 8 C 0.073 3.927 9 N -0.895 5.895 10 Si 0.870 3.130 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.242 3.758 15 C -0.213 4.213 16 C -0.080 4.080 17 C -0.203 4.203 18 C -0.077 4.077 19 C -0.190 4.190 20 C -0.129 4.129 21 C -0.141 4.141 22 C -0.130 4.130 23 H 0.055 0.945 24 H 0.045 0.955 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.025 0.975 29 H 0.029 0.971 30 H 0.264 0.736 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.127 0.873 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.640 -9.257 -7.691 14.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.102 4.102 3 C 0.017 3.983 4 N -0.304 5.304 5 C 0.102 3.898 6 C -0.571 4.571 7 H 0.094 0.906 8 C -0.130 4.130 9 N -0.534 5.534 10 Si 0.697 3.303 11 H -0.201 1.201 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.137 3.863 15 C -0.236 4.236 16 C -0.099 4.099 17 C -0.224 4.224 18 C -0.096 4.096 19 C -0.213 4.213 20 C -0.167 4.167 21 C -0.179 4.179 22 C -0.168 4.168 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.145 0.855 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.303 -9.280 -7.484 14.528 hybrid contribution 0.084 -0.382 0.917 0.997 sum -8.219 -9.662 -6.567 14.284 Atomic orbital electron populations 1.21620 0.93100 1.00932 1.02294 1.22344 0.96094 0.95091 0.96659 1.21281 0.96901 0.88686 0.91422 1.46689 1.25412 1.47183 1.11164 1.19625 0.94032 0.97038 0.79137 1.21504 1.21955 1.14607 0.99038 0.90594 1.24889 0.94695 0.95043 0.98373 1.69903 1.26723 1.30208 1.26535 0.86944 0.79417 0.80977 0.82986 1.20075 1.20986 1.18927 1.17840 0.86187 0.89584 0.92730 1.20610 1.00267 1.07265 0.95502 1.20680 0.95074 0.96044 0.98068 1.20655 1.02523 1.05045 0.94146 1.20804 0.95214 0.97413 0.96141 1.20849 0.98322 1.02048 1.00058 1.22991 1.01319 0.95763 0.96579 1.22798 1.01339 0.96373 0.97354 1.22947 1.00988 0.96413 0.96477 0.92574 0.93604 0.91484 0.91696 0.90471 0.95758 0.95351 0.92569 0.86750 0.87448 0.87683 0.87170 0.85541 0.89921 0.91886 0.90686 0.91949 0.91813 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 7.50 37.16 0.28 -1.43 16 2 C -0.10 -1.42 1.17 -153.69 -0.18 -1.60 16 3 C 0.14 2.40 4.83 -4.04 -0.02 2.38 16 4 N -0.60 -11.98 2.15 -173.12 -0.37 -12.36 16 5 C 0.22 5.12 3.98 -5.19 -0.02 5.09 16 6 C -0.53 -14.60 9.94 -34.44 -0.34 -14.94 16 7 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 8 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 9 N -0.90 -26.95 13.96 55.43 0.77 -26.17 16 10 Si 0.87 20.70 27.47 -169.99 -4.67 16.04 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 14 C 0.24 4.71 4.98 -83.79 -0.42 4.29 16 15 C -0.21 -3.62 7.43 -39.38 -0.29 -3.91 16 16 C -0.08 -1.24 10.04 -39.61 -0.40 -1.64 16 17 C -0.20 -3.21 10.04 -39.54 -0.40 -3.61 16 18 C -0.08 -1.33 10.04 -39.61 -0.40 -1.72 16 19 C -0.19 -3.79 9.21 -39.38 -0.36 -4.15 16 20 C -0.13 -1.84 6.49 -25.91 -0.17 -2.00 16 21 C -0.14 -1.65 7.73 -25.92 -0.20 -1.85 16 22 C -0.13 -1.54 7.23 -25.92 -0.19 -1.73 16 23 H 0.06 0.74 6.99 -51.93 -0.36 0.38 16 24 H 0.04 0.58 7.34 -51.93 -0.38 0.20 16 25 H 0.07 1.09 5.97 -51.93 -0.31 0.78 16 26 H 0.06 1.04 6.19 -51.93 -0.32 0.72 16 27 H 0.08 1.39 7.87 -51.93 -0.41 0.98 16 28 H 0.02 0.55 6.77 -51.93 -0.35 0.20 16 29 H 0.03 0.67 5.25 -51.93 -0.27 0.40 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.11 1.77 5.31 -52.49 -0.28 1.49 16 32 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.13 2.71 6.14 -52.48 -0.32 2.39 16 36 H 0.08 1.25 7.96 -51.93 -0.41 0.84 16 37 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 38 H 0.07 0.82 7.64 -51.93 -0.40 0.42 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 316.84 15.07 4.77 4.77 Total: -1.00 -29.04 316.84 -9.06 -38.10 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.36 Total: 4.50 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -3.20 Total: -24.88 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.40 Total: -38.53 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.04 -9.06 -38.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310422494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.111 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds