Wall clock time and date at job start Mon Mar 30 2020 07:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 112.85020 * 2 1 4 4 N 1.46502 * 109.47482 * 48.79826 * 3 2 1 5 5 C 1.46499 * 119.99658 * 90.00117 * 4 3 2 6 6 C 1.50701 * 109.46992 * 90.00121 * 5 4 3 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99594 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99875 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47061 * 90.00257 * 10 8 6 12 12 H 1.48497 * 109.46906 * 209.99430 * 10 8 6 13 13 H 1.48498 * 109.47403 * 329.99876 * 10 8 6 14 14 C 1.39668 * 120.00128 * 270.00519 * 4 3 2 15 15 C 1.38914 * 120.07575 * 359.72048 * 14 4 3 16 16 C 1.38107 * 119.92457 * 179.77396 * 15 14 4 17 17 C 1.38282 * 120.07550 * 0.50482 * 16 15 14 18 18 C 1.38292 * 120.15077 * 359.74621 * 17 16 15 19 19 C 1.38106 * 120.07016 * 0.02562 * 18 17 16 20 20 C 1.53785 * 113.68837 * 131.26149 * 2 1 3 21 21 C 1.53789 * 87.07737 * 89.12939 * 20 2 1 22 22 C 1.53774 * 87.08148 * 25.43156 * 21 20 2 23 23 H 1.09000 * 109.46822 * 69.66971 * 1 2 3 24 24 H 1.09005 * 109.46949 * 189.66990 * 1 2 3 25 25 H 1.08998 * 109.46784 * 309.67364 * 1 2 3 26 26 H 1.08998 * 109.46784 * 288.80100 * 3 2 1 27 27 H 1.08994 * 109.46982 * 168.80412 * 3 2 1 28 28 H 1.09002 * 109.47391 * 330.00112 * 5 4 3 29 29 H 1.09001 * 109.46813 * 210.00168 * 5 4 3 30 30 H 0.97002 * 119.99739 * 180.02562 * 9 8 6 31 31 H 1.07998 * 120.04036 * 0.02562 * 15 14 4 32 32 H 1.08001 * 119.96373 * 180.25786 * 16 15 14 33 33 H 1.08001 * 119.92698 * 179.73240 * 17 16 15 34 34 H 1.07997 * 119.96554 * 179.97438 * 18 17 16 35 35 H 1.08004 * 120.03710 * 179.97438 * 19 18 17 36 36 H 1.08994 * 113.61421 * 203.67286 * 20 2 1 37 37 H 1.08997 * 113.61358 * 334.58283 * 20 2 1 38 38 H 1.09004 * 113.61133 * 270.88076 * 21 20 2 39 39 H 1.09001 * 113.69078 * 139.99431 * 21 20 2 40 40 H 1.09000 * 113.61355 * 220.02001 * 22 21 20 41 41 H 1.09001 * 113.61703 * 89.11670 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 7 1.4755 2.2133 1.0392 5 6 2.0308 2.2443 2.3945 6 6 3.0289 3.3682 2.5028 7 1 3.2292 3.9968 1.6477 8 6 3.6857 3.5946 3.6938 9 7 4.5563 4.5757 3.7884 10 14 3.3387 2.5078 5.1729 11 1 4.2695 1.3507 5.1662 12 1 3.5324 3.2915 6.4193 13 1 1.9386 2.0171 5.1092 14 6 0.3275 2.9496 0.7379 15 6 -0.1971 2.9259 -0.5482 16 6 -1.3351 3.6514 -0.8415 17 6 -1.9462 4.4092 0.1406 18 6 -1.4236 4.4392 1.4206 19 6 -0.2886 3.7123 1.7219 20 6 2.1479 -0.9288 1.0586 21 6 2.0951 -2.0420 -0.0011 22 6 2.1461 -0.9282 -1.0601 23 1 -0.3633 0.3570 -0.9637 24 1 -0.3633 -1.0131 0.1726 25 1 -0.3633 0.6561 0.7910 26 1 1.9601 1.8733 -0.9728 27 1 3.1942 1.3532 0.1995 28 1 2.5263 1.2967 2.6059 29 1 1.2266 2.4020 3.1131 30 1 5.0186 4.7348 4.6262 31 1 0.2819 2.3375 -1.3167 32 1 -1.7459 3.6301 -1.8401 33 1 -2.8335 4.9790 -0.0926 34 1 -1.9030 5.0323 2.1852 35 1 0.1193 3.7365 2.7217 36 1 3.1609 -0.6487 1.3474 37 1 1.4973 -1.1092 1.9143 38 1 1.1595 -2.6013 -0.0004 39 1 2.9738 -2.6869 -0.0030 40 1 1.4940 -1.1081 -1.9148 41 1 3.1586 -0.6478 -1.3505 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310422494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:15 Heat of formation + Delta-G solvation = 35.702272 kcal Electronic energy + Delta-G solvation = -20008.531352 eV Core-core repulsion = 17274.287942 eV Total energy + Delta-G solvation = -2734.243410 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.09090 -39.60731 -36.87951 -34.71083 -32.17796 -30.92802 -30.63692 -29.15879 -27.00534 -26.44512 -24.56594 -23.47459 -22.53618 -21.11479 -19.14644 -19.01466 -18.39441 -16.86511 -16.46721 -16.35494 -15.96441 -15.63250 -15.30195 -14.87451 -14.68106 -14.30603 -14.05211 -13.95393 -13.54629 -13.33396 -13.18059 -12.85949 -12.77722 -12.53283 -12.42547 -12.25190 -12.02734 -11.97006 -11.76535 -11.50026 -11.38639 -11.07648 -10.89132 -10.80580 -10.35691 -9.63730 -8.34395 -7.88078 -6.38433 0.71986 0.94383 1.30099 1.32222 1.42426 2.28298 2.52206 2.99755 3.19098 3.65997 3.78020 3.86408 4.00493 4.17868 4.27179 4.31805 4.42364 4.51726 4.69953 4.75439 4.78262 4.80014 4.84785 4.87818 4.91250 5.00217 5.04903 5.06564 5.09706 5.10942 5.25192 5.29660 5.32800 5.47193 5.53156 5.61777 5.70406 5.78287 5.90390 6.11656 6.26294 6.61919 6.73429 6.93510 7.27137 8.83153 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.012952 B = 0.009554 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.282490 B = 2930.141703 C = 4526.717462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.100 4.100 3 C 0.140 3.860 4 N -0.611 5.611 5 C 0.239 3.761 6 C -0.532 4.532 7 H 0.025 0.975 8 C 0.014 3.986 9 N -0.946 5.946 10 Si 0.941 3.059 11 H -0.262 1.262 12 H -0.281 1.281 13 H -0.249 1.249 14 C 0.220 3.780 15 C -0.212 4.212 16 C -0.075 4.075 17 C -0.198 4.198 18 C -0.083 4.083 19 C -0.226 4.226 20 C -0.141 4.141 21 C -0.127 4.127 22 C -0.120 4.120 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.039 0.961 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.031 0.969 29 H 0.024 0.976 30 H 0.267 0.733 31 H 0.130 0.870 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.772 -11.132 -9.055 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.102 4.102 3 C 0.017 3.983 4 N -0.317 5.317 5 C 0.116 3.884 6 C -0.571 4.571 7 H 0.043 0.957 8 C -0.184 4.184 9 N -0.586 5.586 10 Si 0.764 3.236 11 H -0.186 1.186 12 H -0.207 1.207 13 H -0.173 1.173 14 C 0.116 3.884 15 C -0.234 4.234 16 C -0.094 4.094 17 C -0.218 4.218 18 C -0.101 4.101 19 C -0.248 4.248 20 C -0.178 4.178 21 C -0.164 4.164 22 C -0.158 4.158 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.148 0.852 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.145 0.855 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.461 -11.163 -8.883 17.690 hybrid contribution 0.703 0.333 1.233 1.458 sum -9.759 -10.829 -7.650 16.463 Atomic orbital electron populations 1.21531 0.92517 1.01235 1.01849 1.22332 0.96437 0.93283 0.98110 1.21395 0.95747 0.90327 0.90825 1.46594 1.26104 1.48486 1.10475 1.19219 0.92606 0.95165 0.81368 1.21695 1.22867 1.15099 0.97446 0.95660 1.25812 0.94302 0.96525 1.01804 1.70064 1.28368 1.32513 1.27645 0.85806 0.80252 0.79122 0.78417 1.18634 1.20663 1.17258 1.18094 0.86345 0.90075 0.93909 1.20827 1.00691 1.07387 0.94508 1.21143 0.94003 0.94475 0.99730 1.21068 1.03079 1.04453 0.93180 1.21063 0.94390 0.96960 0.97717 1.20849 1.00295 1.04457 0.99243 1.23023 1.00156 0.97562 0.97081 1.22753 1.02585 0.95770 0.95327 1.22914 1.01206 0.95168 0.96524 0.91492 0.92069 0.94152 0.90840 0.92647 0.95138 0.95843 0.92396 0.85248 0.83695 0.84421 0.85511 0.88500 0.91611 0.92806 0.89296 0.90824 0.89896 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.96 7.50 71.98 0.54 -2.42 16 2 C -0.10 -2.72 1.17 -51.65 -0.06 -2.78 16 3 C 0.14 4.81 4.83 86.38 0.42 5.23 16 4 N -0.61 -25.16 2.15 -701.64 -1.51 -26.67 16 5 C 0.24 11.41 3.98 85.63 0.34 11.75 16 6 C -0.53 -30.83 9.94 25.60 0.25 -30.58 16 7 H 0.03 1.67 8.06 -2.91 -0.02 1.65 16 8 C 0.01 0.79 5.47 84.66 0.46 1.25 16 9 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 10 Si 0.94 43.72 27.47 68.60 1.88 45.61 16 11 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 14 C 0.22 8.66 4.98 38.22 0.19 8.85 16 15 C -0.21 -6.82 7.43 22.40 0.17 -6.65 16 16 C -0.08 -2.08 10.04 22.25 0.22 -1.86 16 17 C -0.20 -5.66 10.04 22.29 0.22 -5.43 16 18 C -0.08 -2.79 10.04 22.25 0.22 -2.56 16 19 C -0.23 -9.25 9.21 22.40 0.21 -9.04 16 20 C -0.14 -3.89 6.49 31.12 0.20 -3.69 16 21 C -0.13 -2.62 7.73 31.12 0.24 -2.38 16 22 C -0.12 -2.53 7.23 31.12 0.23 -2.31 16 23 H 0.07 1.56 6.99 -2.39 -0.02 1.54 16 24 H 0.06 1.38 7.34 -2.38 -0.02 1.37 16 25 H 0.04 1.27 5.97 -2.39 -0.01 1.26 16 26 H 0.07 2.33 6.19 -2.39 -0.01 2.31 16 27 H 0.06 2.09 7.87 -2.39 -0.02 2.07 16 28 H 0.03 1.41 6.77 -2.39 -0.02 1.40 16 29 H 0.02 1.15 5.25 -2.39 -0.01 1.14 16 30 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.13 3.71 5.31 -2.91 -0.02 3.69 16 32 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 33 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 34 H 0.13 3.71 8.06 -2.91 -0.02 3.68 16 35 H 0.10 4.44 6.14 -2.91 -0.02 4.42 16 36 H 0.07 2.01 7.96 -2.39 -0.02 1.99 16 37 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 38 H 0.09 1.62 7.64 -2.39 -0.02 1.60 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 1.47 8.10 -2.39 -0.02 1.45 16 41 H 0.08 1.71 8.10 -2.39 -0.02 1.69 16 Total: -1.00 -66.47 316.84 5.47 -61.00 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.94 Total: 21.81 kcal Atomic # 6 Polarization: -46.48 SS G_CDS: 3.86 Total: -42.63 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -1.21 Total: -85.78 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.61 kcal Total: -66.47 5.47 -61.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310422494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.698 kcal (2) G-P(sol) polarization free energy of solvation -66.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds