Wall clock time and date at job start Mon Mar 30 2020 07:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.52995 * 110.01624 * 2 1 4 4 N 1.46499 * 109.47277 * 58.60570 * 3 2 1 5 5 C 1.39682 * 119.99914 * 179.97438 * 4 3 2 6 6 C 1.39339 * 119.95283 * 0.02562 * 5 4 3 7 7 C 1.38482 * 120.42337 * 179.71812 * 6 5 4 8 8 C 1.37678 * 120.32444 * 0.27769 * 7 6 5 9 9 C 1.40753 * 119.89901 * 359.97438 * 8 7 6 10 10 C 1.41406 * 120.21075 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99972 * 24.43829 * 10 9 8 12 12 C 1.39925 * 120.00085 * 204.44385 * 10 9 8 13 13 N 1.30834 * 119.99875 * 17.88477 * 12 10 9 14 14 Si 1.86794 * 120.00162 * 197.88634 * 12 10 9 15 15 H 1.48502 * 109.47513 * 89.99896 * 14 12 10 16 16 H 1.48500 * 109.47302 * 209.99735 * 14 12 10 17 17 H 1.48500 * 109.47110 * 329.99759 * 14 12 10 18 18 C 1.38283 * 119.95145 * 180.27791 * 5 4 3 19 19 C 1.54267 * 110.06682 * 121.41597 * 2 1 3 20 20 C 1.54886 * 104.19423 * 95.69791 * 19 2 1 21 21 C 1.54893 * 102.75228 * 37.93934 * 20 19 2 22 22 C 1.53876 * 110.03015 * 238.60631 * 2 1 3 23 23 H 1.09005 * 109.46448 * 60.70329 * 1 2 3 24 24 H 1.08996 * 109.46986 * 180.69836 * 1 2 3 25 25 H 1.08993 * 109.47032 * 300.70436 * 1 2 3 26 26 H 1.08999 * 109.47135 * 298.60406 * 3 2 1 27 27 H 1.09005 * 109.47133 * 178.60762 * 3 2 1 28 28 H 0.96995 * 120.00040 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.78669 * 359.97438 * 6 5 4 30 30 H 1.08004 * 119.83329 * 180.29935 * 7 6 5 31 31 H 1.08005 * 120.04952 * 179.97438 * 8 7 6 32 32 H 0.97004 * 119.99636 * 180.02562 * 13 12 10 33 33 H 1.07991 * 120.16265 * 0.02562 * 18 5 4 34 34 H 1.09001 * 110.48029 * 214.36959 * 19 2 1 35 35 H 1.08998 * 110.49147 * 337.01821 * 19 2 1 36 36 H 1.09000 * 110.76110 * 279.62348 * 20 19 2 37 37 H 1.09008 * 110.75793 * 156.25250 * 20 19 2 38 38 H 1.09000 * 110.48888 * 203.37949 * 21 20 19 39 39 H 1.08996 * 110.60077 * 80.78960 * 21 20 19 40 40 H 1.09002 * 110.03373 * 359.95410 * 22 2 1 41 41 H 1.08993 * 110.02811 * 121.33877 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0538 1.4375 0.0000 4 7 1.5449 2.1427 1.1790 5 6 1.8905 3.4784 1.3971 6 6 2.7189 4.1393 0.4924 7 6 3.0630 5.4652 0.6960 8 6 2.5944 6.1435 1.7987 9 6 1.7610 5.4875 2.7241 10 6 1.2765 6.1777 3.8591 11 1 1.1937 7.2545 3.8418 12 6 0.9043 5.4658 5.0048 13 7 1.3160 4.2354 5.1728 14 14 -0.1805 6.2720 6.2941 15 1 -1.6071 6.0139 5.9726 16 1 0.1356 5.7070 7.6306 17 1 0.0675 7.7361 6.3044 18 6 1.4143 4.1413 2.5133 19 6 2.0594 -0.7553 1.2366 20 6 2.3298 -2.1897 0.7186 21 6 2.8885 -1.9397 -0.7043 22 6 2.0572 -0.7531 -1.2340 23 1 -0.3632 0.5029 -0.8963 24 1 -0.3633 -1.0276 0.0125 25 1 -0.3633 0.5247 0.8835 26 1 1.7159 1.9473 -0.9022 27 1 3.1435 1.4273 0.0250 28 1 0.9686 1.6818 1.8085 29 1 3.0917 3.6154 -0.3754 30 1 3.7018 5.9696 -0.0139 31 1 2.8659 7.1773 1.9533 32 1 1.0576 3.7417 5.9669 33 1 0.7759 3.6288 3.2175 34 1 2.9820 -0.2993 1.5960 35 1 1.3075 -0.7700 2.0255 36 1 1.4052 -2.7654 0.6748 37 1 3.0699 -2.6923 1.3414 38 1 2.7415 -2.8188 -1.3318 39 1 3.9451 -1.6758 -0.6605 40 1 1.2230 -1.1192 -1.8325 41 1 2.6854 -0.0942 -1.8333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313442318.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:29 Heat of formation + Delta-G solvation = -6.782937 kcal Electronic energy + Delta-G solvation = -19202.827030 eV Core-core repulsion = 16466.741323 eV Total energy + Delta-G solvation = -2736.085707 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.27553 -37.48164 -34.63829 -33.22682 -31.18668 -29.38093 -28.77004 -27.93010 -25.85366 -25.12335 -23.60005 -21.02864 -20.69657 -19.77181 -18.51724 -17.13594 -16.09443 -15.56695 -14.99679 -14.65780 -14.49518 -13.99857 -13.79146 -13.65245 -13.08124 -12.66475 -12.58504 -12.33524 -12.08286 -11.95178 -11.46466 -11.16152 -11.09229 -11.03646 -10.99319 -10.73912 -10.59585 -10.50996 -10.46447 -10.34432 -10.23093 -9.55325 -9.38449 -9.17925 -8.68021 -7.25463 -6.68060 -6.07942 -4.26318 2.90896 3.12500 3.16281 3.28744 3.39600 4.01314 4.31851 4.59329 4.65200 4.76023 4.78811 5.26138 5.34550 5.37769 5.41480 5.53180 5.64869 5.80943 5.84027 5.85660 5.92472 5.96916 6.06399 6.08981 6.15695 6.26176 6.33300 6.33529 6.41999 6.49922 6.65234 6.94205 7.17600 7.19420 7.44054 7.51184 7.88253 8.02490 8.17269 8.23217 8.55164 8.79783 8.90423 9.06791 9.18461 10.30492 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024625 B = 0.004887 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.793398 B = 5727.736391 C = 6475.065793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 C 0.151 3.849 4 N -0.758 5.758 5 C 0.217 3.783 6 C -0.299 4.299 7 C -0.066 4.066 8 C -0.258 4.258 9 C 0.139 3.861 10 C -0.466 4.466 11 H 0.076 0.924 12 C 0.078 3.922 13 N -0.793 5.793 14 Si 0.904 3.096 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.263 1.263 18 C -0.232 4.232 19 C -0.114 4.114 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.113 4.113 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.388 0.612 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.276 0.724 33 H 0.116 0.884 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 -11.519 -7.369 13.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.076 4.076 3 C 0.025 3.975 4 N -0.392 5.392 5 C 0.118 3.882 6 C -0.322 4.322 7 C -0.085 4.085 8 C -0.279 4.279 9 C 0.136 3.864 10 C -0.496 4.496 11 H 0.094 0.906 12 C -0.139 4.139 13 N -0.419 5.419 14 Si 0.729 3.271 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.187 1.187 18 C -0.256 4.256 19 C -0.152 4.152 20 C -0.162 4.162 21 C -0.161 4.161 22 C -0.151 4.151 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.222 0.778 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.507 -11.735 -7.373 13.868 hybrid contribution -0.607 0.156 0.872 1.074 sum -1.114 -11.579 -6.501 13.326 Atomic orbital electron populations 1.21871 0.94206 1.01033 1.02192 1.21410 0.95879 0.94927 0.95376 1.21147 0.97319 0.89753 0.89270 1.44444 1.57558 1.10262 1.26899 1.17660 0.93755 0.82867 0.93940 1.19883 1.12912 0.96289 1.03127 1.20278 0.98065 0.93855 0.96341 1.20849 1.07682 0.99474 0.99895 1.17318 0.87170 0.91191 0.90747 1.19558 1.38299 0.94750 0.96995 0.90630 1.25860 0.94346 0.94633 0.99046 1.69879 1.34905 1.10592 1.26520 0.86395 0.80877 0.80561 0.79316 1.19432 1.20484 1.18702 1.20716 1.09628 0.96891 0.98401 1.22465 1.01441 0.94557 0.96711 1.22487 1.00431 0.97101 0.96150 1.22343 0.99607 0.97761 0.96405 1.22201 0.99411 0.96687 0.96807 0.92696 0.92954 0.92301 0.93646 0.93498 0.77756 0.89762 0.89737 0.89476 0.91273 0.86611 0.91051 0.91644 0.91824 0.91871 0.92074 0.91706 0.91696 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 7.97 37.16 0.30 -1.34 16 2 C -0.08 -0.94 0.66 -153.38 -0.10 -1.05 16 3 C 0.15 2.38 3.44 -4.04 -0.01 2.37 16 4 N -0.76 -14.58 5.23 -58.68 -0.31 -14.89 16 5 C 0.22 5.15 6.64 -83.86 -0.56 4.59 16 6 C -0.30 -6.98 9.32 -39.08 -0.36 -7.35 16 7 C -0.07 -1.58 10.01 -39.70 -0.40 -1.98 16 8 C -0.26 -6.68 9.79 -38.84 -0.38 -7.06 16 9 C 0.14 3.85 5.57 -106.85 -0.60 3.25 16 10 C -0.47 -12.80 9.05 -37.75 -0.34 -13.14 16 11 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 12 C 0.08 2.02 5.14 -17.35 -0.09 1.93 16 13 N -0.79 -20.98 10.95 55.55 0.61 -20.37 16 14 Si 0.90 19.15 29.59 -169.99 -5.03 14.12 16 15 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 16 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 17 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 18 C -0.23 -6.18 8.53 -38.67 -0.33 -6.51 16 19 C -0.11 -1.42 5.37 -25.07 -0.13 -1.55 16 20 C -0.12 -1.27 6.91 -24.74 -0.17 -1.44 16 21 C -0.12 -1.21 6.83 -25.07 -0.17 -1.38 16 22 C -0.11 -1.20 6.11 -25.61 -0.16 -1.36 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.78 6.80 -51.93 -0.35 0.42 16 26 H 0.05 0.74 7.94 -51.93 -0.41 0.33 16 27 H 0.05 0.78 7.92 -51.93 -0.41 0.37 16 28 H 0.39 7.20 6.96 -40.82 -0.28 6.91 16 29 H 0.08 1.78 6.70 -52.49 -0.35 1.43 16 30 H 0.08 1.75 8.06 -52.48 -0.42 1.33 16 31 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 32 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 33 H 0.12 3.17 6.15 -52.49 -0.32 2.85 16 34 H 0.07 1.00 7.84 -51.93 -0.41 0.60 16 35 H 0.06 0.82 7.84 -51.93 -0.41 0.42 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 41 H 0.07 0.70 7.67 -51.93 -0.40 0.30 16 LS Contribution 323.12 15.07 4.87 4.87 Total: -1.00 -28.08 323.12 -10.05 -38.13 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.68 Total: 10.15 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: -3.51 Total: -32.01 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.30 Total: -35.25 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.08 -10.05 -38.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313442318.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.344 kcal (2) G-P(sol) polarization free energy of solvation -28.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds