Wall clock time and date at job start Mon Mar 30 2020 07:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.52995 * 110.01624 * 2 1 4 4 N 1.46499 * 109.47277 * 58.60570 * 3 2 1 5 5 C 1.39682 * 119.99914 * 179.97438 * 4 3 2 6 6 C 1.39339 * 119.95283 * 0.02562 * 5 4 3 7 7 C 1.38482 * 120.42337 * 179.71812 * 6 5 4 8 8 C 1.37678 * 120.32444 * 0.27769 * 7 6 5 9 9 C 1.40753 * 119.89901 * 359.97438 * 8 7 6 10 10 C 1.41406 * 120.21075 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99972 * 24.43829 * 10 9 8 12 12 C 1.39925 * 120.00085 * 204.44385 * 10 9 8 13 13 N 1.30834 * 119.99875 * 17.88477 * 12 10 9 14 14 Si 1.86794 * 120.00162 * 197.88634 * 12 10 9 15 15 H 1.48502 * 109.47513 * 89.99896 * 14 12 10 16 16 H 1.48500 * 109.47302 * 209.99735 * 14 12 10 17 17 H 1.48500 * 109.47110 * 329.99759 * 14 12 10 18 18 C 1.38283 * 119.95145 * 180.27791 * 5 4 3 19 19 C 1.54267 * 110.06682 * 121.41597 * 2 1 3 20 20 C 1.54886 * 104.19423 * 95.69791 * 19 2 1 21 21 C 1.54893 * 102.75228 * 37.93934 * 20 19 2 22 22 C 1.53876 * 110.03015 * 238.60631 * 2 1 3 23 23 H 1.09005 * 109.46448 * 60.70329 * 1 2 3 24 24 H 1.08996 * 109.46986 * 180.69836 * 1 2 3 25 25 H 1.08993 * 109.47032 * 300.70436 * 1 2 3 26 26 H 1.08999 * 109.47135 * 298.60406 * 3 2 1 27 27 H 1.09005 * 109.47133 * 178.60762 * 3 2 1 28 28 H 0.96995 * 120.00040 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.78669 * 359.97438 * 6 5 4 30 30 H 1.08004 * 119.83329 * 180.29935 * 7 6 5 31 31 H 1.08005 * 120.04952 * 179.97438 * 8 7 6 32 32 H 0.97004 * 119.99636 * 180.02562 * 13 12 10 33 33 H 1.07991 * 120.16265 * 0.02562 * 18 5 4 34 34 H 1.09001 * 110.48029 * 214.36959 * 19 2 1 35 35 H 1.08998 * 110.49147 * 337.01821 * 19 2 1 36 36 H 1.09000 * 110.76110 * 279.62348 * 20 19 2 37 37 H 1.09008 * 110.75793 * 156.25250 * 20 19 2 38 38 H 1.09000 * 110.48888 * 203.37949 * 21 20 19 39 39 H 1.08996 * 110.60077 * 80.78960 * 21 20 19 40 40 H 1.09002 * 110.03373 * 359.95410 * 22 2 1 41 41 H 1.08993 * 110.02811 * 121.33877 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0538 1.4375 0.0000 4 7 1.5449 2.1427 1.1790 5 6 1.8905 3.4784 1.3971 6 6 2.7189 4.1393 0.4924 7 6 3.0630 5.4652 0.6960 8 6 2.5944 6.1435 1.7987 9 6 1.7610 5.4875 2.7241 10 6 1.2765 6.1777 3.8591 11 1 1.1937 7.2545 3.8418 12 6 0.9043 5.4658 5.0048 13 7 1.3160 4.2354 5.1728 14 14 -0.1805 6.2720 6.2941 15 1 -1.6071 6.0139 5.9726 16 1 0.1356 5.7070 7.6306 17 1 0.0675 7.7361 6.3044 18 6 1.4143 4.1413 2.5133 19 6 2.0594 -0.7553 1.2366 20 6 2.3298 -2.1897 0.7186 21 6 2.8885 -1.9397 -0.7043 22 6 2.0572 -0.7531 -1.2340 23 1 -0.3632 0.5029 -0.8963 24 1 -0.3633 -1.0276 0.0125 25 1 -0.3633 0.5247 0.8835 26 1 1.7159 1.9473 -0.9022 27 1 3.1435 1.4273 0.0250 28 1 0.9686 1.6818 1.8085 29 1 3.0917 3.6154 -0.3754 30 1 3.7018 5.9696 -0.0139 31 1 2.8659 7.1773 1.9533 32 1 1.0576 3.7417 5.9669 33 1 0.7759 3.6288 3.2175 34 1 2.9820 -0.2993 1.5960 35 1 1.3075 -0.7700 2.0255 36 1 1.4052 -2.7654 0.6748 37 1 3.0699 -2.6923 1.3414 38 1 2.7415 -2.8188 -1.3318 39 1 3.9451 -1.6758 -0.6605 40 1 1.2230 -1.1192 -1.8325 41 1 2.6854 -0.0942 -1.8333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313442318.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:29 Heat of formation + Delta-G solvation = -20.071113 kcal Electronic energy + Delta-G solvation = -19203.403249 eV Core-core repulsion = 16466.741323 eV Total energy + Delta-G solvation = -2736.661925 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.42093 -39.22329 -36.28104 -35.03641 -32.40642 -31.34031 -29.70682 -29.47731 -27.22289 -26.95957 -24.82759 -22.86831 -21.87935 -21.33175 -19.61852 -19.04101 -17.68173 -16.86234 -16.50245 -16.37785 -15.83183 -15.53764 -15.09254 -14.64596 -14.54059 -14.38475 -14.10758 -13.75758 -13.49838 -13.31425 -13.03436 -12.79248 -12.69771 -12.39478 -12.12245 -11.97090 -11.91673 -11.71890 -11.54143 -11.45863 -11.37084 -11.31318 -11.25822 -11.05199 -10.46151 -9.25267 -8.61726 -7.88322 -6.32142 1.08621 1.33956 1.38241 1.51321 1.58806 2.23110 2.80161 2.87797 3.62807 3.67934 3.77575 3.87252 4.33467 4.36644 4.43284 4.47641 4.52195 4.61689 4.73723 4.79489 4.81245 4.86719 4.95835 4.99256 5.00652 5.09786 5.14360 5.20077 5.24853 5.26758 5.31310 5.41210 5.46768 5.50481 5.50492 5.62301 5.97043 6.11377 6.21906 6.27336 6.58797 6.95127 7.06043 7.08113 7.26498 8.38655 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024625 B = 0.004887 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.793398 B = 5727.736391 C = 6475.065793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.069 4.069 3 C 0.149 3.851 4 N -0.749 5.749 5 C 0.220 3.780 6 C -0.304 4.304 7 C -0.062 4.062 8 C -0.286 4.286 9 C 0.109 3.891 10 C -0.505 4.505 11 H 0.071 0.929 12 C 0.038 3.962 13 N -0.823 5.823 14 Si 0.980 3.020 15 H -0.263 1.263 16 H -0.267 1.267 17 H -0.259 1.259 18 C -0.261 4.261 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.110 4.110 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.047 0.953 27 H 0.041 0.959 28 H 0.391 0.609 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.285 0.715 33 H 0.099 0.901 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.901 -12.965 -8.299 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.070 4.070 3 C 0.025 3.975 4 N -0.382 5.382 5 C 0.118 3.882 6 C -0.327 4.327 7 C -0.081 4.081 8 C -0.307 4.307 9 C 0.106 3.894 10 C -0.535 4.535 11 H 0.090 0.910 12 C -0.177 4.177 13 N -0.449 5.449 14 Si 0.801 3.199 15 H -0.188 1.188 16 H -0.192 1.192 17 H -0.183 1.183 18 C -0.285 4.285 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.148 4.148 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.225 0.775 29 H 0.128 0.872 30 H 0.136 0.864 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.789 -13.215 -8.330 15.641 hybrid contribution -0.458 0.536 1.076 1.287 sum -1.247 -12.679 -7.254 14.661 Atomic orbital electron populations 1.21854 0.93712 1.02086 1.01418 1.21383 0.96180 0.92802 0.96617 1.21344 0.96993 0.91600 0.87612 1.44547 1.56891 1.08850 1.27870 1.17794 0.92856 0.84520 0.92983 1.20212 1.12405 0.96408 1.03657 1.20643 0.97439 0.94065 0.95960 1.21015 1.08724 0.99993 1.00966 1.17715 0.87959 0.92104 0.91622 1.19816 1.40564 0.94865 0.98260 0.91040 1.26710 0.95000 0.95140 1.00837 1.69935 1.35513 1.11891 1.27532 0.85248 0.78657 0.79480 0.76543 1.18757 1.19194 1.18321 1.20648 1.11125 0.97100 0.99647 1.22447 1.00170 0.96248 0.96611 1.22474 1.01238 0.95456 0.96463 1.22345 0.99206 0.98081 0.96185 1.22201 1.00065 0.96778 0.95800 0.92518 0.90974 0.94031 0.93517 0.94040 0.77515 0.87225 0.86420 0.89210 0.90480 0.88312 0.93192 0.92302 0.90638 0.91359 0.90111 0.91988 0.90199 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 7.97 71.99 0.57 -2.42 16 2 C -0.07 -1.62 0.66 -51.45 -0.03 -1.66 16 3 C 0.15 4.55 3.44 86.38 0.30 4.85 16 4 N -0.75 -28.90 5.23 -339.58 -1.78 -30.68 16 5 C 0.22 10.56 6.64 38.17 0.25 10.82 16 6 C -0.30 -13.94 9.32 22.59 0.21 -13.73 16 7 C -0.06 -2.92 10.01 22.20 0.22 -2.70 16 8 C -0.29 -15.13 9.79 22.75 0.22 -14.90 16 9 C 0.11 6.27 5.57 -21.31 -0.12 6.15 16 10 C -0.51 -28.82 9.05 23.46 0.21 -28.61 16 11 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 12 C 0.04 1.99 5.14 85.25 0.44 2.43 16 13 N -0.82 -44.68 10.95 21.82 0.24 -44.44 16 14 Si 0.98 39.76 29.59 68.60 2.03 41.79 16 15 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 16 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 17 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 18 C -0.26 -14.38 8.53 22.86 0.20 -14.18 16 19 C -0.12 -2.79 5.37 31.67 0.17 -2.62 16 20 C -0.12 -2.15 6.91 31.89 0.22 -1.93 16 21 C -0.12 -2.00 6.83 31.67 0.22 -1.78 16 22 C -0.11 -2.05 6.11 31.32 0.19 -1.85 16 23 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 24 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.04 1.07 6.80 -2.39 -0.02 1.05 16 26 H 0.05 1.44 7.94 -2.39 -0.02 1.42 16 27 H 0.04 1.33 7.92 -2.38 -0.02 1.31 16 28 H 0.39 14.74 6.96 -92.71 -0.65 14.09 16 29 H 0.11 4.41 6.70 -2.91 -0.02 4.39 16 30 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 31 H 0.09 4.53 8.06 -2.91 -0.02 4.50 16 32 H 0.28 13.96 8.30 -92.70 -0.77 13.19 16 33 H 0.10 5.67 6.15 -2.91 -0.02 5.65 16 34 H 0.05 1.39 7.84 -2.39 -0.02 1.38 16 35 H 0.06 1.46 7.84 -2.39 -0.02 1.44 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.27 7.67 -2.39 -0.02 1.26 16 41 H 0.07 1.24 7.67 -2.39 -0.02 1.22 16 Total: -1.00 -61.88 323.12 4.12 -57.76 By element: Atomic # 1 Polarization: 37.35 SS G_CDS: 0.35 Total: 37.71 kcal Atomic # 6 Polarization: -65.41 SS G_CDS: 3.27 Total: -62.14 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -1.54 Total: -75.12 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -61.88 4.12 -57.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313442318.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.688 kcal (2) G-P(sol) polarization free energy of solvation -61.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds