Wall clock time and date at job start Mon Mar 30 2020 06:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37093 * 120.00164 * 2 1 4 4 H 1.08007 * 120.00103 * 211.39630 * 3 2 1 5 5 C 1.38951 * 120.00238 * 31.39363 * 3 2 1 6 6 N 1.31411 * 119.99591 * 6.85324 * 5 3 2 7 7 Si 1.86802 * 120.00119 * 186.84685 * 5 3 2 8 8 H 1.48503 * 109.46960 * 60.00555 * 7 5 3 9 9 H 1.48498 * 109.46718 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47051 * 300.00484 * 7 5 3 11 11 C 1.34777 * 119.99781 * 180.02562 * 2 1 3 12 12 O 1.21291 * 119.99859 * 179.97438 * 11 2 1 13 13 C 1.50703 * 119.99958 * 359.97438 * 11 2 1 14 14 C 1.52999 * 109.46941 * 180.02562 * 13 11 2 15 15 C 1.50703 * 109.46941 * 179.97438 * 14 13 11 16 16 C 1.32565 * 119.99578 * 127.45125 * 15 14 13 17 17 C 1.47808 * 120.00468 * 7.65399 * 16 15 14 18 18 C 1.39532 * 120.14101 * 216.69090 * 17 16 15 19 19 C 1.37976 * 119.85530 * 180.02562 * 18 17 16 20 20 C 1.38349 * 120.14152 * 359.97438 * 19 18 17 21 21 C 1.38339 * 120.28419 * 0.02562 * 20 19 18 22 22 C 1.37977 * 120.14480 * 359.97438 * 21 20 19 23 23 H 1.09004 * 109.47063 * 264.94917 * 1 2 3 24 24 H 1.09006 * 109.46982 * 24.94980 * 1 2 3 25 25 H 1.09000 * 109.47538 * 144.95206 * 1 2 3 26 26 H 0.96998 * 119.99699 * 179.97438 * 6 5 3 27 27 H 1.09001 * 109.47132 * 60.00499 * 13 11 2 28 28 H 1.09005 * 109.47207 * 300.00141 * 13 11 2 29 29 H 1.09001 * 109.47078 * 60.00126 * 14 13 11 30 30 H 1.09002 * 109.47405 * 300.00250 * 14 13 11 31 31 H 1.07999 * 120.00189 * 307.44225 * 15 14 13 32 32 H 1.08002 * 119.99627 * 187.65735 * 16 15 14 33 33 H 1.08004 * 120.07382 * 0.04288 * 18 17 16 34 34 H 1.07998 * 119.93119 * 179.71886 * 19 18 17 35 35 H 1.07996 * 119.85337 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.92811 * 180.02562 * 21 20 19 37 37 H 1.08004 * 120.07161 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1119 1.2557 -0.4873 5 6 1.6084 2.3026 0.6268 6 7 0.5063 2.1882 1.3334 7 14 2.4462 3.9643 0.4652 8 1 2.5056 4.3514 -0.9673 9 1 1.6752 4.9830 1.2221 10 1 3.8240 3.8793 1.0126 11 6 2.1388 -1.1672 -0.0005 12 8 3.3517 -1.1672 -0.0010 13 6 1.3852 -2.4723 -0.0005 14 6 2.3795 -3.6353 -0.0005 15 6 1.6259 -4.9403 0.0001 16 6 1.8988 -5.8636 -0.9112 17 6 3.0514 -5.6876 -1.8196 18 6 2.9675 -6.1080 -3.1474 19 6 4.0471 -5.9413 -3.9902 20 6 5.2109 -5.3583 -3.5213 21 6 5.3004 -4.9394 -2.2059 22 6 4.2279 -5.1004 -1.3530 23 1 -0.3633 -0.0905 1.0237 24 1 -0.3633 0.9318 -0.4335 25 1 -0.3634 -0.8413 -0.5901 26 1 0.1281 2.9667 1.7713 27 1 0.7583 -2.5299 -0.8903 28 1 0.7589 -2.5302 0.8897 29 1 3.0061 -3.5775 0.8895 30 1 3.0062 -3.5775 -0.8905 31 1 0.8637 -5.1235 0.7430 32 1 1.2788 -6.7445 -0.9898 33 1 2.0593 -6.5626 -3.5149 34 1 3.9851 -6.2703 -5.0170 35 1 6.0533 -5.2305 -4.1849 36 1 6.2116 -4.4846 -1.8461 37 1 4.2990 -4.7726 -0.3263 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348668712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:04 Heat of formation + Delta-G solvation = 7.750477 kcal Electronic energy + Delta-G solvation = -18525.637952 eV Core-core repulsion = 15654.349367 eV Total energy + Delta-G solvation = -2871.288585 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.34545 -38.36500 -35.51311 -34.48716 -31.83265 -31.29325 -30.71309 -28.84312 -26.29491 -25.08023 -23.55008 -22.40695 -21.79779 -19.08122 -18.64456 -16.79972 -16.41283 -15.83716 -15.52806 -15.20243 -14.66969 -14.48187 -14.07296 -13.86710 -13.36512 -13.26971 -12.70719 -12.49642 -12.37058 -11.67082 -11.53357 -11.37258 -11.27436 -11.14075 -10.96795 -10.84292 -10.72591 -10.35750 -10.34340 -10.24352 -9.58243 -8.93162 -8.74938 -8.33428 -8.05344 -7.51900 -6.26131 -3.88987 1.14168 1.51950 2.50254 3.22684 3.26966 3.31237 3.95773 3.99515 4.19742 4.80987 4.93102 4.99353 5.06130 5.16631 5.20397 5.31316 5.48180 5.54595 5.67089 5.75050 5.81513 5.94583 6.07785 6.15405 6.20707 6.33941 6.42764 6.50954 6.58435 6.59916 6.69569 6.77467 6.88357 6.96822 7.12023 7.22328 7.60451 8.25323 8.56263 9.25544 9.48255 10.06859 10.79622 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.004388 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.855298 B = 6379.119702 C = 6954.194160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.451 5.451 3 C -0.306 4.306 4 H 0.092 0.908 5 C 0.032 3.968 6 N -0.886 5.886 7 Si 0.926 3.074 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.452 3.548 12 O -0.588 6.588 13 C -0.125 4.125 14 C -0.092 4.092 15 C -0.124 4.124 16 C -0.143 4.143 17 C -0.053 4.053 18 C -0.115 4.115 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.119 4.119 22 C -0.102 4.102 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.025 0.975 26 H 0.267 0.733 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.662 -14.622 -5.852 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.171 5.171 3 C -0.434 4.434 4 H 0.110 0.890 5 C -0.171 4.171 6 N -0.526 5.526 7 Si 0.752 3.248 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.240 3.760 12 O -0.473 6.473 13 C -0.166 4.166 14 C -0.129 4.129 15 C -0.142 4.142 16 C -0.161 4.161 17 C -0.053 4.053 18 C -0.133 4.133 19 C -0.144 4.144 20 C -0.142 4.142 21 C -0.137 4.137 22 C -0.120 4.120 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.043 0.957 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.111 -14.454 -5.744 15.593 hybrid contribution -0.012 0.964 0.055 0.965 sum 1.099 -13.490 -5.689 14.682 Atomic orbital electron populations 1.21437 0.81614 0.99706 1.00315 1.43517 1.05271 1.04744 1.63519 1.19510 1.04617 0.85981 1.33322 0.89038 1.25406 0.96584 1.00200 0.94864 1.69931 1.20524 1.30767 1.31331 0.86016 0.79307 0.81070 0.78375 1.19953 1.20977 1.19809 1.20208 0.88104 0.85024 0.82626 1.90498 1.14102 1.87329 1.55342 1.21498 0.98771 0.93698 1.02610 1.20930 0.97650 0.90192 1.04150 1.23489 0.99228 0.94874 0.96621 1.21576 0.97349 1.00208 0.96977 1.19076 0.93996 0.98538 0.93677 1.21211 0.98454 1.00563 0.93076 1.21024 0.93636 1.00318 0.99473 1.21170 0.97964 0.99231 0.95869 1.21134 0.98889 0.99747 0.93942 1.21569 0.92384 0.97258 1.00780 0.93060 0.91216 0.95667 0.92309 0.90680 0.90421 0.90418 0.89296 0.86657 0.86487 0.86243 0.86376 0.86407 0.85952 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.57 8.42 59.85 0.50 3.08 16 2 N -0.45 -11.88 2.99 -122.19 -0.37 -12.25 16 3 C -0.31 -8.76 9.09 -14.94 -0.14 -8.90 16 4 H 0.09 2.72 7.57 -52.48 -0.40 2.33 16 5 C 0.03 0.88 5.14 -17.47 -0.09 0.79 16 6 N -0.89 -24.21 10.99 55.50 0.61 -23.60 16 7 Si 0.93 21.22 29.56 -169.99 -5.02 16.20 16 8 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 C 0.45 11.26 7.63 -10.98 -0.08 11.18 16 12 O -0.59 -16.51 15.77 5.55 0.09 -16.43 16 13 C -0.13 -2.34 4.30 -27.88 -0.12 -2.46 16 14 C -0.09 -1.54 3.22 -27.88 -0.09 -1.63 16 15 C -0.12 -1.63 9.47 -36.21 -0.34 -1.98 16 16 C -0.14 -1.78 9.80 -37.58 -0.37 -2.15 16 17 C -0.05 -0.72 5.20 -105.02 -0.55 -1.27 16 18 C -0.12 -1.42 9.79 -39.20 -0.38 -1.80 16 19 C -0.13 -1.48 10.03 -39.64 -0.40 -1.88 16 20 C -0.12 -1.51 10.04 -39.50 -0.40 -1.91 16 21 C -0.12 -1.61 10.03 -39.64 -0.40 -2.00 16 22 C -0.10 -1.47 7.30 -39.19 -0.29 -1.76 16 23 H 0.05 1.19 7.78 -51.93 -0.40 0.78 16 24 H 0.07 1.67 7.09 -51.93 -0.37 1.30 16 25 H 0.02 0.47 6.65 -51.93 -0.35 0.13 16 26 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.07 1.30 7.41 -51.93 -0.38 0.91 16 28 H 0.08 1.34 8.11 -51.93 -0.42 0.91 16 29 H 0.08 1.36 7.92 -51.93 -0.41 0.94 16 30 H 0.09 1.62 4.68 -51.93 -0.24 1.37 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 37 H 0.13 1.91 6.16 -52.48 -0.32 1.59 16 LS Contribution 310.10 15.07 4.67 4.67 Total: -1.00 -31.86 310.10 -8.12 -39.98 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.97 Total: 4.10 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -3.13 Total: -12.67 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.24 Total: -35.85 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.09 Total: -16.43 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.86 -8.12 -39.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348668712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.735 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds