Wall clock time and date at job start Mon Mar 30 2020 06:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37093 * 120.00164 * 2 1 4 4 H 1.08007 * 120.00103 * 211.39630 * 3 2 1 5 5 C 1.38951 * 120.00238 * 31.39363 * 3 2 1 6 6 N 1.31411 * 119.99591 * 6.85324 * 5 3 2 7 7 Si 1.86802 * 120.00119 * 186.84685 * 5 3 2 8 8 H 1.48503 * 109.46960 * 60.00555 * 7 5 3 9 9 H 1.48498 * 109.46718 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47051 * 300.00484 * 7 5 3 11 11 C 1.34777 * 119.99781 * 180.02562 * 2 1 3 12 12 O 1.21291 * 119.99859 * 179.97438 * 11 2 1 13 13 C 1.50703 * 119.99958 * 359.97438 * 11 2 1 14 14 C 1.52999 * 109.46941 * 180.02562 * 13 11 2 15 15 C 1.50703 * 109.46941 * 179.97438 * 14 13 11 16 16 C 1.32565 * 119.99578 * 127.45125 * 15 14 13 17 17 C 1.47808 * 120.00468 * 7.65399 * 16 15 14 18 18 C 1.39532 * 120.14101 * 216.69090 * 17 16 15 19 19 C 1.37976 * 119.85530 * 180.02562 * 18 17 16 20 20 C 1.38349 * 120.14152 * 359.97438 * 19 18 17 21 21 C 1.38339 * 120.28419 * 0.02562 * 20 19 18 22 22 C 1.37977 * 120.14480 * 359.97438 * 21 20 19 23 23 H 1.09004 * 109.47063 * 264.94917 * 1 2 3 24 24 H 1.09006 * 109.46982 * 24.94980 * 1 2 3 25 25 H 1.09000 * 109.47538 * 144.95206 * 1 2 3 26 26 H 0.96998 * 119.99699 * 179.97438 * 6 5 3 27 27 H 1.09001 * 109.47132 * 60.00499 * 13 11 2 28 28 H 1.09005 * 109.47207 * 300.00141 * 13 11 2 29 29 H 1.09001 * 109.47078 * 60.00126 * 14 13 11 30 30 H 1.09002 * 109.47405 * 300.00250 * 14 13 11 31 31 H 1.07999 * 120.00189 * 307.44225 * 15 14 13 32 32 H 1.08002 * 119.99627 * 187.65735 * 16 15 14 33 33 H 1.08004 * 120.07382 * 0.04288 * 18 17 16 34 34 H 1.07998 * 119.93119 * 179.71886 * 19 18 17 35 35 H 1.07996 * 119.85337 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.92811 * 180.02562 * 21 20 19 37 37 H 1.08004 * 120.07161 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1119 1.2557 -0.4873 5 6 1.6084 2.3026 0.6268 6 7 0.5063 2.1882 1.3334 7 14 2.4462 3.9643 0.4652 8 1 2.5056 4.3514 -0.9673 9 1 1.6752 4.9830 1.2221 10 1 3.8240 3.8793 1.0126 11 6 2.1388 -1.1672 -0.0005 12 8 3.3517 -1.1672 -0.0010 13 6 1.3852 -2.4723 -0.0005 14 6 2.3795 -3.6353 -0.0005 15 6 1.6259 -4.9403 0.0001 16 6 1.8988 -5.8636 -0.9112 17 6 3.0514 -5.6876 -1.8196 18 6 2.9675 -6.1080 -3.1474 19 6 4.0471 -5.9413 -3.9902 20 6 5.2109 -5.3583 -3.5213 21 6 5.3004 -4.9394 -2.2059 22 6 4.2279 -5.1004 -1.3530 23 1 -0.3633 -0.0905 1.0237 24 1 -0.3633 0.9318 -0.4335 25 1 -0.3634 -0.8413 -0.5901 26 1 0.1281 2.9667 1.7713 27 1 0.7583 -2.5299 -0.8903 28 1 0.7589 -2.5302 0.8897 29 1 3.0061 -3.5775 0.8895 30 1 3.0062 -3.5775 -0.8905 31 1 0.8637 -5.1235 0.7430 32 1 1.2788 -6.7445 -0.9898 33 1 2.0593 -6.5626 -3.5149 34 1 3.9851 -6.2703 -5.0170 35 1 6.0533 -5.2305 -4.1849 36 1 6.2116 -4.4846 -1.8461 37 1 4.2990 -4.7726 -0.3263 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348668712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:04 Heat of formation + Delta-G solvation = -9.575118 kcal Electronic energy + Delta-G solvation = -18526.389246 eV Core-core repulsion = 15654.349367 eV Total energy + Delta-G solvation = -2872.039879 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.57123 -40.04176 -36.90689 -36.26936 -33.73402 -32.69244 -31.75017 -29.97950 -28.19691 -26.79238 -25.13618 -23.37637 -22.96497 -20.48957 -20.10845 -18.85460 -17.86050 -17.17523 -16.84421 -16.59382 -16.20914 -16.03608 -15.70859 -15.24021 -14.50878 -14.48239 -14.19596 -13.97360 -13.47514 -13.33192 -13.23304 -13.13209 -12.89828 -12.71110 -12.51346 -12.31525 -12.13003 -12.06992 -11.83233 -11.50301 -10.98673 -10.63681 -10.31029 -9.74418 -9.57908 -9.07175 -8.33320 -6.05103 0.15708 0.53731 1.38610 1.39283 1.49378 1.52735 2.06933 2.28597 2.97652 3.07334 3.15094 3.86474 3.99332 4.08079 4.10430 4.18607 4.29574 4.33620 4.46839 4.59065 4.62067 4.65602 4.79602 4.83963 4.98723 5.08433 5.12725 5.19464 5.32224 5.36263 5.42567 5.50069 5.56242 5.65331 5.73784 5.97083 6.14705 6.16889 6.51724 7.18090 7.48141 8.06149 8.70360 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.004388 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.855298 B = 6379.119702 C = 6954.194160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.469 5.469 3 C -0.346 4.346 4 H 0.065 0.935 5 C -0.001 4.001 6 N -0.900 5.900 7 Si 0.988 3.012 8 H -0.266 1.266 9 H -0.268 1.268 10 H -0.279 1.279 11 C 0.438 3.562 12 O -0.632 6.632 13 C -0.112 4.112 14 C -0.085 4.085 15 C -0.133 4.133 16 C -0.129 4.129 17 C -0.073 4.073 18 C -0.118 4.118 19 C -0.129 4.129 20 C -0.130 4.130 21 C -0.141 4.141 22 C -0.124 4.124 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.273 0.727 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.142 0.858 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.140 0.860 36 H 0.124 0.876 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.845 -15.727 -6.825 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.188 5.188 3 C -0.474 4.474 4 H 0.082 0.918 5 C -0.203 4.203 6 N -0.538 5.538 7 Si 0.811 3.189 8 H -0.191 1.191 9 H -0.193 1.193 10 H -0.204 1.204 11 C 0.228 3.772 12 O -0.520 6.520 13 C -0.152 4.152 14 C -0.122 4.122 15 C -0.150 4.150 16 C -0.146 4.146 17 C -0.073 4.073 18 C -0.136 4.136 19 C -0.147 4.147 20 C -0.148 4.148 21 C -0.159 4.159 22 C -0.142 4.142 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.160 0.840 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.157 0.843 36 H 0.142 0.858 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.432 -15.569 -6.715 16.961 hybrid contribution 0.513 1.269 0.319 1.405 sum 0.082 -14.301 -6.395 15.666 Atomic orbital electron populations 1.21406 0.79593 1.00595 1.00484 1.43833 1.06671 1.04664 1.63661 1.19497 1.04682 0.88046 1.35188 0.91757 1.26149 0.97078 1.03087 0.93958 1.70000 1.20927 1.31920 1.30942 0.85086 0.77973 0.76959 0.78841 1.19061 1.19261 1.20427 1.21335 0.88083 0.86715 0.81042 1.90459 1.16342 1.88252 1.56906 1.21465 0.98798 0.90525 1.04415 1.20779 0.97172 0.91758 1.02492 1.23379 1.00113 0.93350 0.98206 1.21871 0.96524 1.00690 0.95562 1.19357 0.94124 0.98931 0.94896 1.21573 0.99633 0.99927 0.92473 1.21435 0.93039 0.99345 1.00851 1.21495 0.99190 0.98657 0.95451 1.21338 0.99036 1.00601 0.94958 1.21610 0.93650 0.98484 1.00479 0.93752 0.92923 0.91437 0.91743 0.88538 0.88385 0.92382 0.91192 0.84022 0.83320 0.83665 0.83435 0.84257 0.85847 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.48 8.42 127.77 1.08 6.55 16 2 N -0.47 -25.10 2.99 -658.88 -1.97 -27.07 16 3 C -0.35 -20.38 9.09 84.04 0.76 -19.61 16 4 H 0.06 4.03 7.57 -2.91 -0.02 4.01 16 5 C 0.00 -0.06 5.14 84.93 0.44 0.38 16 6 N -0.90 -48.97 10.99 21.66 0.24 -48.73 16 7 Si 0.99 43.66 29.56 68.60 2.03 45.68 16 8 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 9 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 C 0.44 22.26 7.63 87.66 0.67 22.93 16 12 O -0.63 -37.15 15.77 -3.06 -0.05 -37.20 16 13 C -0.11 -4.07 4.30 29.85 0.13 -3.95 16 14 C -0.08 -2.83 3.22 29.85 0.10 -2.74 16 15 C -0.13 -3.22 9.47 24.54 0.23 -2.99 16 16 C -0.13 -2.87 9.80 23.65 0.23 -2.64 16 17 C -0.07 -1.91 5.20 -20.12 -0.10 -2.01 16 18 C -0.12 -2.62 9.79 22.52 0.22 -2.40 16 19 C -0.13 -2.72 10.03 22.23 0.22 -2.49 16 20 C -0.13 -3.03 10.04 22.32 0.22 -2.81 16 21 C -0.14 -3.92 10.03 22.23 0.22 -3.69 16 22 C -0.12 -3.68 7.30 22.52 0.16 -3.52 16 23 H 0.04 2.02 7.78 -2.38 -0.02 2.00 16 24 H 0.05 2.50 7.09 -2.38 -0.02 2.48 16 25 H 0.07 2.40 6.65 -2.39 -0.02 2.39 16 26 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 27 H 0.10 3.10 7.41 -2.39 -0.02 3.08 16 28 H 0.10 3.17 8.11 -2.38 -0.02 3.15 16 29 H 0.06 2.11 7.92 -2.39 -0.02 2.09 16 30 H 0.07 2.62 4.68 -2.39 -0.01 2.60 16 31 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 33 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 34 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 35 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 36 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 37 H 0.12 3.65 6.16 -2.91 -0.02 3.63 16 Total: -1.00 -71.17 310.10 5.88 -65.28 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 1.05 Total: 21.02 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 4.58 Total: -18.99 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -1.73 Total: -75.80 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.05 Total: -37.20 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -71.17 5.88 -65.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348668712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.709 kcal (2) G-P(sol) polarization free energy of solvation -71.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds