Wall clock time and date at job start Mon Mar 30 2020 07:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 120.00278 * 2 1 4 4 H 1.48494 * 109.47078 * 240.00090 * 3 2 1 5 5 H 1.48499 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47271 * 119.99663 * 3 2 1 7 7 C 1.37878 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00071 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00271 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47149 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46680 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47165 * 55.00502 * 11 10 9 13 13 N 1.46899 * 109.47495 * 294.99879 * 11 10 9 14 14 C 1.46898 * 111.00144 * 154.99975 * 13 11 10 15 15 C 1.53004 * 109.47045 * 179.97438 * 14 13 11 16 16 C 1.52997 * 117.49811 * 243.74652 * 15 14 13 17 17 C 1.53001 * 117.49712 * 175.08598 * 15 14 13 18 18 C 1.50706 * 109.47046 * 174.99835 * 11 10 9 19 19 C 1.38234 * 120.00196 * 260.00428 * 18 11 10 20 20 C 1.38235 * 119.99814 * 179.97438 * 19 18 11 21 21 C 1.38230 * 120.00326 * 359.97438 * 20 19 18 22 22 C 1.38243 * 120.00092 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99618 * 359.97438 * 22 21 20 24 24 H 0.97005 * 119.99941 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47205 * 59.99580 * 9 7 2 26 26 H 1.09004 * 109.46623 * 300.00045 * 9 7 2 27 27 H 1.09006 * 109.47296 * 59.99883 * 10 9 7 28 28 H 1.08993 * 109.47090 * 299.99966 * 10 9 7 29 29 H 1.00901 * 110.99837 * 31.04951 * 13 11 10 30 30 H 1.08990 * 109.47599 * 300.00281 * 14 13 11 31 31 H 1.09006 * 109.46890 * 60.00441 * 14 13 11 32 32 H 1.08993 * 115.54923 * 29.42409 * 15 14 13 33 33 H 1.08991 * 117.50285 * 0.02562 * 16 15 14 34 34 H 1.09001 * 117.49449 * 145.02491 * 16 15 14 35 35 H 1.08996 * 117.50078 * 214.97860 * 17 15 14 36 36 H 1.09008 * 117.50049 * 0.02562 * 17 15 14 37 37 H 1.08000 * 119.99516 * 0.24808 * 19 18 11 38 38 H 1.08000 * 119.99297 * 179.97438 * 20 19 18 39 39 H 1.08001 * 120.00350 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.00235 * 179.97438 * 22 21 20 41 41 H 1.08005 * 119.99804 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 1 0.7885 -5.0076 -0.8397 13 7 0.7279 -5.1176 1.2574 14 6 -0.4306 -6.0045 1.0869 15 6 -1.1870 -6.1159 2.4123 16 6 -1.2474 -7.4923 3.0776 17 6 -2.4966 -6.9071 2.4139 18 6 2.4549 -6.1300 -0.1201 19 6 2.6557 -6.7388 -1.3448 20 6 3.5501 -7.7867 -1.4573 21 6 4.2441 -8.2256 -0.3453 22 6 4.0441 -7.6160 0.8793 23 6 3.1505 -6.5674 0.9915 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8713 -3.6039 0.8923 28 1 2.8726 -3.6047 -0.8876 29 1 0.4434 -4.2137 1.6041 30 1 -1.0924 -5.5953 0.3238 31 1 -0.0892 -6.9931 0.7797 32 1 -1.1249 -5.2442 3.0636 33 1 -0.7480 -8.3184 2.5716 34 1 -1.2255 -7.5260 4.1669 35 1 -3.2958 -6.5563 3.0667 36 1 -2.8190 -7.3487 1.4709 37 1 2.1170 -6.3927 -2.2146 38 1 3.7066 -8.2626 -2.4141 39 1 4.9426 -9.0446 -0.4331 40 1 4.5860 -7.9591 1.7482 41 1 2.9939 -6.0914 1.9483 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353918490.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:01 Heat of formation + Delta-G solvation = 31.168209 kcal Electronic energy + Delta-G solvation = -18878.012182 eV Core-core repulsion = 16143.572161 eV Total energy + Delta-G solvation = -2734.440022 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.26936 -37.64287 -35.94430 -33.15489 -31.32376 -30.59035 -30.29178 -26.82300 -24.63001 -23.40398 -22.30761 -22.23235 -20.95922 -20.47361 -19.41842 -16.73315 -16.24106 -15.83630 -15.26919 -14.95776 -14.64867 -14.45860 -14.07467 -13.63644 -13.12284 -13.06711 -12.79973 -12.41751 -12.30160 -12.06523 -11.60063 -11.47946 -11.19806 -10.95844 -10.90613 -10.76616 -10.59760 -10.48325 -10.17105 -9.97004 -9.74733 -9.39284 -9.16649 -8.63947 -8.37401 -8.30953 -8.01987 -6.02307 -4.04529 1.63841 1.70349 3.32876 3.37133 3.39990 3.86397 4.07661 4.44197 4.48918 4.88797 5.02772 5.09642 5.15271 5.21434 5.32800 5.34882 5.43294 5.54606 5.66148 5.75199 5.78420 5.80551 5.89460 5.94017 5.99998 6.03041 6.15785 6.24497 6.34312 6.37675 6.51357 6.68520 6.76288 6.85123 6.96770 7.02415 7.29813 7.49516 7.59176 7.75756 7.87972 7.96964 8.39769 9.01641 9.59820 11.08795 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013793 B = 0.005641 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.495945 B = 4962.325155 C = 6547.170466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.108 4.108 11 C 0.123 3.877 12 H 0.048 0.952 13 N -0.681 5.681 14 C 0.091 3.909 15 C -0.142 4.142 16 C -0.176 4.176 17 C -0.185 4.185 18 C -0.060 4.060 19 C -0.122 4.122 20 C -0.127 4.127 21 C -0.134 4.134 22 C -0.129 4.129 23 C -0.086 4.086 24 H 0.261 0.739 25 H 0.013 0.987 26 H 0.017 0.983 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.356 0.644 30 H 0.032 0.968 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 -16.276 1.987 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C 0.014 3.986 12 H 0.066 0.934 13 N -0.315 5.315 14 C -0.038 4.038 15 C -0.160 4.160 16 C -0.213 4.213 17 C -0.222 4.222 18 C -0.061 4.061 19 C -0.141 4.141 20 C -0.145 4.145 21 C -0.152 4.152 22 C -0.148 4.148 23 C -0.105 4.105 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.035 0.965 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.178 0.822 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.363 -16.626 2.240 16.832 hybrid contribution -0.164 1.478 -0.560 1.589 sum 1.199 -15.148 1.680 15.288 Atomic orbital electron populations 1.69944 1.06042 1.26733 1.50773 1.25006 0.94832 0.99229 0.95244 0.86661 0.79599 0.83119 0.78662 1.20260 1.21310 1.20198 1.21177 0.93037 0.90922 1.50674 0.92693 1.19130 0.93949 0.91571 0.96850 1.21827 0.99212 0.92128 1.01390 1.20571 0.93529 0.93657 0.90892 0.93449 1.60467 1.23907 1.18424 1.28748 1.21496 0.90694 0.97671 0.93952 1.22262 0.98772 0.95714 0.99274 1.22961 1.01562 0.97064 0.99699 1.22960 0.91653 1.04945 1.02657 1.20063 0.97027 0.95989 0.92992 1.21060 0.99209 0.96503 0.97327 1.21001 0.97518 0.97689 0.98280 1.21030 1.00401 1.00455 0.93284 1.21153 0.99099 0.97214 0.97286 1.21061 0.94526 0.95741 0.99143 0.92955 0.96878 0.96518 0.92198 0.92562 0.82210 0.94974 0.91548 0.87478 0.89062 0.89196 0.88983 0.89079 0.86551 0.86737 0.86902 0.86696 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.55 4.80 -27.88 -0.13 0.42 16 10 C -0.11 -2.20 4.72 -26.73 -0.13 -2.33 16 11 C 0.12 2.13 2.24 -68.86 -0.15 1.98 16 12 H 0.05 0.85 7.66 -51.93 -0.40 0.45 16 13 N -0.68 -11.15 5.55 -107.95 -0.60 -11.75 16 14 C 0.09 1.33 5.76 -3.82 -0.02 1.31 16 15 C -0.14 -1.85 5.95 -90.62 -0.54 -2.39 16 16 C -0.18 -1.99 10.18 -26.69 -0.27 -2.26 16 17 C -0.18 -2.07 10.25 -26.69 -0.27 -2.34 16 18 C -0.06 -0.95 4.71 -104.62 -0.49 -1.44 16 19 C -0.12 -1.78 9.67 -39.58 -0.38 -2.17 16 20 C -0.13 -1.64 10.05 -39.59 -0.40 -2.03 16 21 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 22 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 23 C -0.09 -1.30 9.33 -39.58 -0.37 -1.67 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.02 0.43 6.42 -51.93 -0.33 0.10 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.36 6.40 6.46 -39.29 -0.25 6.15 16 30 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 31 H 0.07 0.96 7.73 -51.93 -0.40 0.56 16 32 H 0.11 1.47 8.13 -51.93 -0.42 1.04 16 33 H 0.09 1.02 8.03 -51.93 -0.42 0.60 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 37 H 0.12 1.58 8.04 -52.49 -0.42 1.16 16 38 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.13 1.99 7.72 -52.48 -0.41 1.58 16 LS Contribution 339.36 15.07 5.11 5.11 Total: -1.00 -28.97 339.36 -10.96 -39.93 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.82 Total: 6.34 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: -4.37 Total: -30.41 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.14 Total: -37.54 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.97 -10.96 -39.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353918490.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.100 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds