Wall clock time and date at job start Mon Mar 30 2020 07:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 120.00278 * 2 1 4 4 H 1.48494 * 109.47078 * 240.00090 * 3 2 1 5 5 H 1.48499 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47271 * 119.99663 * 3 2 1 7 7 C 1.37878 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00071 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00271 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47149 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46680 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47165 * 55.00502 * 11 10 9 13 13 N 1.46899 * 109.47495 * 294.99879 * 11 10 9 14 14 C 1.46898 * 111.00144 * 154.99975 * 13 11 10 15 15 C 1.53004 * 109.47045 * 179.97438 * 14 13 11 16 16 C 1.52997 * 117.49811 * 243.74652 * 15 14 13 17 17 C 1.53001 * 117.49712 * 175.08598 * 15 14 13 18 18 C 1.50706 * 109.47046 * 174.99835 * 11 10 9 19 19 C 1.38234 * 120.00196 * 260.00428 * 18 11 10 20 20 C 1.38235 * 119.99814 * 179.97438 * 19 18 11 21 21 C 1.38230 * 120.00326 * 359.97438 * 20 19 18 22 22 C 1.38243 * 120.00092 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99618 * 359.97438 * 22 21 20 24 24 H 0.97005 * 119.99941 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47205 * 59.99580 * 9 7 2 26 26 H 1.09004 * 109.46623 * 300.00045 * 9 7 2 27 27 H 1.09006 * 109.47296 * 59.99883 * 10 9 7 28 28 H 1.08993 * 109.47090 * 299.99966 * 10 9 7 29 29 H 1.00901 * 110.99837 * 31.04951 * 13 11 10 30 30 H 1.08990 * 109.47599 * 300.00281 * 14 13 11 31 31 H 1.09006 * 109.46890 * 60.00441 * 14 13 11 32 32 H 1.08993 * 115.54923 * 29.42409 * 15 14 13 33 33 H 1.08991 * 117.50285 * 0.02562 * 16 15 14 34 34 H 1.09001 * 117.49449 * 145.02491 * 16 15 14 35 35 H 1.08996 * 117.50078 * 214.97860 * 17 15 14 36 36 H 1.09008 * 117.50049 * 0.02562 * 17 15 14 37 37 H 1.08000 * 119.99516 * 0.24808 * 19 18 11 38 38 H 1.08000 * 119.99297 * 179.97438 * 20 19 18 39 39 H 1.08001 * 120.00350 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.00235 * 179.97438 * 22 21 20 41 41 H 1.08005 * 119.99804 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 1 0.7885 -5.0076 -0.8397 13 7 0.7279 -5.1176 1.2574 14 6 -0.4306 -6.0045 1.0869 15 6 -1.1870 -6.1159 2.4123 16 6 -1.2474 -7.4923 3.0776 17 6 -2.4966 -6.9071 2.4139 18 6 2.4549 -6.1300 -0.1201 19 6 2.6557 -6.7388 -1.3448 20 6 3.5501 -7.7867 -1.4573 21 6 4.2441 -8.2256 -0.3453 22 6 4.0441 -7.6160 0.8793 23 6 3.1505 -6.5674 0.9915 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8713 -3.6039 0.8923 28 1 2.8726 -3.6047 -0.8876 29 1 0.4434 -4.2137 1.6041 30 1 -1.0924 -5.5953 0.3238 31 1 -0.0892 -6.9931 0.7797 32 1 -1.1249 -5.2442 3.0636 33 1 -0.7480 -8.3184 2.5716 34 1 -1.2255 -7.5260 4.1669 35 1 -3.2958 -6.5563 3.0667 36 1 -2.8190 -7.3487 1.4709 37 1 2.1170 -6.3927 -2.2146 38 1 3.7066 -8.2626 -2.4141 39 1 4.9426 -9.0446 -0.4331 40 1 4.5860 -7.9591 1.7482 41 1 2.9939 -6.0914 1.9483 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353918490.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:00 Heat of formation + Delta-G solvation = 17.112115 kcal Electronic energy + Delta-G solvation = -18878.621700 eV Core-core repulsion = 16143.572161 eV Total energy + Delta-G solvation = -2735.049540 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.44416 -38.71054 -37.27430 -35.15163 -32.81088 -31.82388 -31.61411 -28.43877 -26.18211 -24.90426 -23.32680 -23.20763 -22.55072 -21.58045 -20.83426 -18.61249 -17.53749 -16.99344 -16.62597 -16.52445 -16.02020 -15.84106 -15.24950 -14.89266 -14.45876 -14.38483 -14.14669 -13.90966 -13.68618 -13.52664 -13.30976 -12.81959 -12.54535 -12.49257 -12.34253 -12.12349 -11.98779 -11.83853 -11.67133 -11.35854 -11.15419 -11.14816 -10.90176 -10.55255 -9.70573 -9.48202 -9.37071 -8.20795 -6.31490 0.55227 0.63275 1.39521 1.42012 1.49957 2.40360 2.84928 2.99469 3.12332 3.27082 3.80315 3.98321 4.05038 4.07630 4.22834 4.27828 4.30929 4.40240 4.44557 4.47634 4.60183 4.72391 4.76025 4.76935 4.79524 4.87495 5.02532 5.04266 5.12407 5.23166 5.27702 5.28628 5.33078 5.49305 5.66730 5.67691 5.72729 5.80778 5.82370 6.20843 6.22168 6.26390 6.41595 6.83781 7.37545 8.90233 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013793 B = 0.005641 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.495945 B = 4962.325155 C = 6547.170466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.031 3.969 10 C -0.091 4.091 11 C 0.133 3.867 12 H 0.035 0.965 13 N -0.678 5.678 14 C 0.098 3.902 15 C -0.165 4.165 16 C -0.164 4.164 17 C -0.174 4.174 18 C -0.079 4.079 19 C -0.136 4.136 20 C -0.126 4.126 21 C -0.129 4.129 22 C -0.130 4.130 23 C -0.100 4.100 24 H 0.263 0.737 25 H -0.015 1.015 26 H 0.003 0.997 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.343 0.657 30 H 0.019 0.981 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.452 -17.750 2.153 18.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.075 0.925 9 C -0.007 4.007 10 C -0.129 4.129 11 C 0.024 3.976 12 H 0.053 0.947 13 N -0.310 5.310 14 C -0.031 4.031 15 C -0.183 4.183 16 C -0.200 4.200 17 C -0.212 4.212 18 C -0.080 4.080 19 C -0.155 4.155 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.148 4.148 23 C -0.119 4.119 24 H 0.072 0.928 25 H 0.003 0.997 26 H 0.021 0.979 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.163 0.837 30 H 0.037 0.963 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.136 0.864 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.156 0.844 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.701 -18.122 2.404 18.479 hybrid contribution -0.576 1.870 -0.625 2.054 sum 2.125 -16.251 1.779 16.486 Atomic orbital electron populations 1.70073 1.07656 1.27789 1.51505 1.25906 0.95725 1.03108 0.94644 0.85555 0.78351 0.78359 0.79128 1.19370 1.20750 1.19219 1.21614 0.93416 0.92388 1.50755 0.92537 1.18980 0.94170 0.92771 0.94741 1.21570 0.98113 0.92353 1.00867 1.20352 0.93515 0.92943 0.90827 0.94732 1.60545 1.24667 1.17724 1.28111 1.21456 0.89878 0.97064 0.94729 1.22174 1.00800 0.96655 0.98681 1.23021 1.01103 0.95547 1.00374 1.23051 0.91337 1.03628 1.03146 1.19904 0.97619 0.96251 0.94181 1.21215 1.00062 0.97352 0.96843 1.21339 0.96442 0.96770 0.99830 1.21440 1.00068 1.00615 0.92515 1.21442 0.98368 0.96276 0.98734 1.21068 0.95528 0.96827 0.98433 0.92782 0.99657 0.97912 0.92537 0.93003 0.83703 0.96319 0.91190 0.88560 0.88656 0.88008 0.87830 0.88485 0.86377 0.84063 0.83677 0.84355 0.86293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16 2 C 0.00 0.24 5.46 84.66 0.46 0.71 16 3 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.03 1.60 4.80 29.85 0.14 1.75 16 10 C -0.09 -3.89 4.72 30.59 0.14 -3.74 16 11 C 0.13 4.82 2.24 44.17 0.10 4.92 16 12 H 0.03 1.32 7.66 -2.39 -0.02 1.30 16 13 N -0.68 -23.26 5.55 -495.45 -2.75 -26.01 16 14 C 0.10 2.95 5.76 86.31 0.50 3.44 16 15 C -0.16 -4.33 5.95 -10.79 -0.06 -4.39 16 16 C -0.16 -3.49 10.18 30.62 0.31 -3.18 16 17 C -0.17 -3.72 10.25 30.62 0.31 -3.40 16 18 C -0.08 -2.50 4.71 -19.86 -0.09 -2.60 16 19 C -0.14 -3.86 9.67 22.27 0.22 -3.65 16 20 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 21 C -0.13 -2.76 10.05 22.27 0.22 -2.54 16 22 C -0.13 -3.13 10.05 22.27 0.22 -2.90 16 23 C -0.10 -2.96 9.33 22.27 0.21 -2.75 16 24 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 25 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 26 H 0.00 0.15 6.42 -2.39 -0.02 0.13 16 27 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 28 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.34 13.17 6.46 -89.69 -0.58 12.59 16 30 H 0.02 0.60 8.05 -2.39 -0.02 0.59 16 31 H 0.07 2.04 7.73 -2.38 -0.02 2.02 16 32 H 0.10 2.73 8.13 -2.39 -0.02 2.71 16 33 H 0.10 1.97 8.03 -2.39 -0.02 1.95 16 34 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.10 1.97 8.14 -2.39 -0.02 1.96 16 36 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.12 3.20 8.04 -2.91 -0.02 3.17 16 38 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 39 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 40 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 41 H 0.12 3.69 7.72 -2.91 -0.02 3.66 16 Total: -1.00 -62.92 339.36 3.11 -59.81 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.41 Total: 27.76 kcal Atomic # 6 Polarization: -55.12 SS G_CDS: 3.14 Total: -51.98 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -2.47 Total: -82.13 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -62.92 3.11 -59.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353918490.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.924 kcal (2) G-P(sol) polarization free energy of solvation -62.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds