Wall clock time and date at job start Mon Mar 30 2020 06:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00111 * 2 1 4 4 H 1.48498 * 109.46785 * 269.99668 * 3 2 1 5 5 H 1.48491 * 109.47138 * 29.99346 * 3 2 1 6 6 H 1.48503 * 109.47147 * 149.99886 * 3 2 1 7 7 C 1.37883 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99875 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99691 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.05579 * 59.96352 * 9 7 2 11 11 C 1.53869 * 110.03024 * 298.53861 * 9 7 2 12 12 C 1.54266 * 106.60031 * 240.71754 * 11 9 7 13 13 C 1.54894 * 104.31305 * 336.32486 * 12 11 9 14 14 H 1.08993 * 110.76071 * 279.69749 * 13 12 11 15 15 N 1.46892 * 110.75562 * 156.31936 * 13 12 11 16 16 C 1.46896 * 111.00038 * 86.45635 * 15 13 12 17 17 C 1.53002 * 109.47602 * 180.02562 * 16 15 13 18 18 C 1.53000 * 115.54996 * 34.32759 * 17 16 15 19 19 F 1.39901 * 109.46848 * 85.58518 * 18 17 16 20 20 F 1.39894 * 109.47016 * 205.58568 * 18 17 16 21 21 C 1.53002 * 117.49457 * 248.62545 * 17 16 15 22 22 C 1.52999 * 117.49934 * 180.02562 * 17 16 15 23 23 C 1.54266 * 110.02909 * 181.37581 * 9 7 2 24 24 H 0.96998 * 120.00289 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.02983 * 121.43506 * 11 9 7 26 26 H 1.08996 * 110.07773 * 0.02649 * 11 9 7 27 27 H 1.09002 * 110.48629 * 95.07240 * 12 11 9 28 28 H 1.08998 * 110.48744 * 217.58143 * 12 11 9 29 29 H 1.00906 * 111.00506 * 210.41191 * 15 13 12 30 30 H 1.08999 * 109.47539 * 299.99883 * 16 15 13 31 31 H 1.09003 * 109.46898 * 59.99768 * 16 15 13 32 32 H 1.08994 * 109.46898 * 325.58625 * 18 17 16 33 33 H 1.08997 * 117.50608 * 359.97438 * 21 17 16 34 34 H 1.09006 * 117.49685 * 145.02062 * 21 17 16 35 35 H 1.09001 * 117.49719 * 214.97720 * 22 17 16 36 36 H 1.08998 * 117.49943 * 359.97438 * 22 17 16 37 37 H 1.09005 * 110.48526 * 261.57452 * 23 9 7 38 38 H 1.09006 * 110.48581 * 24.21645 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6205 -2.5668 -0.8861 11 6 0.3888 -2.6100 1.2702 12 6 0.8854 -3.8555 2.0329 13 6 1.5477 -4.7336 0.9422 14 1 0.7945 -5.2886 0.3830 15 7 2.5343 -5.6455 1.5361 16 6 1.8953 -6.8862 1.9946 17 6 2.9519 -7.8084 2.6063 18 6 4.0885 -7.1063 3.3520 19 9 3.6976 -6.8599 4.6725 20 9 5.2243 -7.9230 3.3465 21 6 3.2911 -9.0939 1.8491 22 6 2.4822 -9.1610 3.1455 23 6 2.2415 -3.6813 0.0360 24 1 -0.4850 0.8400 -0.0004 25 1 -0.6601 -2.7314 0.9998 26 1 0.5145 -1.7199 1.8867 27 1 1.6161 -3.5727 2.7906 28 1 0.0477 -4.3822 2.4899 29 1 3.2817 -5.8421 0.8873 30 1 1.1409 -6.6506 2.7452 31 1 1.4226 -7.3855 1.1487 32 1 4.3177 -6.1618 2.8586 33 1 2.7614 -9.2829 0.9154 34 1 4.3244 -9.4396 1.8821 35 1 2.9830 -9.5508 4.0317 36 1 1.4204 -9.3937 3.0649 37 1 2.3932 -4.0821 -0.9663 38 1 3.1912 -3.3702 0.4713 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382141196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:26 Heat of formation + Delta-G solvation = -94.425726 kcal Electronic energy + Delta-G solvation = -19742.040542 eV Core-core repulsion = 16447.924829 eV Total energy + Delta-G solvation = -3294.115713 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.88752 -46.86492 -38.59065 -37.25633 -33.99444 -31.92538 -28.12373 -27.98629 -26.53975 -24.61708 -23.43608 -22.70914 -19.99102 -19.48581 -18.94618 -17.35320 -17.03484 -16.81954 -16.16174 -15.27680 -14.95251 -14.62185 -14.29468 -14.16232 -13.72383 -13.58628 -13.25659 -13.13551 -12.44272 -12.29133 -12.13144 -11.80715 -11.73208 -11.18659 -10.99292 -10.76704 -10.54520 -10.49221 -10.32740 -10.22173 -10.14004 -9.88492 -9.58672 -9.15799 -8.66014 -8.33508 -8.24762 -5.97711 -4.00556 3.25742 3.32500 3.39518 3.42890 3.71798 4.13364 4.27378 4.43321 4.47496 4.54579 4.77856 5.19150 5.30380 5.35577 5.37155 5.40807 5.49142 5.57455 5.62734 5.71553 5.80062 5.84030 5.94250 6.29486 6.49885 6.66404 6.75687 6.80872 7.00577 7.12665 7.39221 7.46506 7.56554 7.76564 7.96408 8.02081 8.50579 9.02704 9.63178 11.11569 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.034398 B = 0.004225 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.807128 B = 6626.243339 C = 6909.376849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.047 3.953 10 H 0.024 0.976 11 C -0.091 4.091 12 C -0.111 4.111 13 C 0.078 3.922 14 H 0.042 0.958 15 N -0.686 5.686 16 C 0.101 3.899 17 C -0.189 4.189 18 C 0.299 3.701 19 F -0.203 7.203 20 F -0.213 7.213 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.112 4.112 24 H 0.259 0.741 25 H 0.035 0.965 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.337 0.663 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.135 0.865 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.040 0.960 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.578 -16.804 4.263 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.028 3.972 10 H 0.042 0.958 11 C -0.130 4.130 12 C -0.149 4.149 13 C -0.031 4.031 14 H 0.060 0.940 15 N -0.316 5.316 16 C -0.028 4.028 17 C -0.190 4.190 18 C 0.245 3.755 19 F -0.184 7.184 20 F -0.194 7.194 21 C -0.195 4.195 22 C -0.193 4.193 23 C -0.150 4.150 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.155 0.845 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.152 0.848 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.059 0.941 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.407 -16.380 4.916 17.660 hybrid contribution 0.201 0.454 -0.714 0.869 sum 4.608 -15.926 4.202 17.103 Atomic orbital electron populations 1.69982 1.05865 1.26369 1.50665 1.24978 0.94818 0.98985 0.95323 0.86662 0.79972 0.83773 0.78006 1.20815 1.21323 1.19907 1.21252 0.92720 0.90480 1.50435 0.92712 1.19178 0.92312 0.91664 0.93997 0.95792 1.22028 0.97738 0.95034 0.98201 1.22429 0.98289 0.96792 0.97388 1.22713 0.92569 0.92360 0.95425 0.93998 1.60585 1.13400 1.12960 1.44684 1.21415 0.93943 0.88942 0.98509 1.22607 1.00281 0.90654 1.05497 1.21252 0.80538 0.94203 0.79499 1.92965 1.91306 1.95037 1.39087 1.92922 1.53650 1.76211 1.96620 1.23191 1.02120 0.97852 0.96341 1.22985 1.01179 0.97064 0.98088 1.22685 1.00394 0.95893 0.96050 0.93149 0.94638 0.91690 0.91718 0.94297 0.84496 0.90026 0.94302 0.84834 0.87966 0.87646 0.88203 0.87880 0.94069 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 12.33 55.43 0.68 -24.91 16 2 C 0.06 1.67 5.07 -17.82 -0.09 1.58 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.51 -13.88 8.34 -34.44 -0.29 -14.17 16 8 H 0.05 1.47 7.55 -52.49 -0.40 1.08 16 9 C 0.05 1.16 2.85 -90.65 -0.26 0.90 16 10 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 11 C -0.09 -2.12 5.55 -25.62 -0.14 -2.27 16 12 C -0.11 -2.10 6.44 -25.07 -0.16 -2.26 16 13 C 0.08 1.31 3.20 -65.53 -0.21 1.11 16 14 H 0.04 0.70 7.91 -51.93 -0.41 0.29 16 15 N -0.69 -9.42 4.89 -104.43 -0.51 -9.93 16 16 C 0.10 1.20 5.68 -3.83 -0.02 1.18 16 17 C -0.19 -2.02 2.26 -154.51 -0.35 -2.36 16 18 C 0.30 3.61 5.22 37.16 0.19 3.81 16 19 F -0.20 -2.87 17.29 2.25 0.04 -2.83 16 20 F -0.21 -2.64 15.92 2.25 0.04 -2.60 16 21 C -0.16 -1.40 9.56 -26.75 -0.26 -1.66 16 22 C -0.16 -1.44 9.90 -26.75 -0.26 -1.70 16 23 C -0.11 -2.21 5.81 -24.88 -0.14 -2.36 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 1.69 7.17 -51.93 -0.37 1.31 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.34 4.21 8.39 -39.29 -0.33 3.88 16 30 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 31 H 0.04 0.43 7.85 -51.93 -0.41 0.02 16 32 H 0.13 1.59 6.70 -51.93 -0.35 1.25 16 33 H 0.10 0.80 8.05 -51.93 -0.42 0.39 16 34 H 0.11 0.93 7.22 -51.93 -0.38 0.56 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.35 7.68 -51.93 -0.40 0.95 16 LS Contribution 313.12 15.07 4.72 4.72 Total: -1.00 -28.24 313.12 -8.02 -36.26 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.97 Total: 1.23 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -1.99 Total: -18.21 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.17 Total: -34.84 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 0.07 Total: -5.43 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.24 -8.02 -36.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382141196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.164 kcal (2) G-P(sol) polarization free energy of solvation -28.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds