Wall clock time and date at job start Mon Mar 30 2020 06:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00111 * 2 1 4 4 H 1.48498 * 109.46785 * 269.99668 * 3 2 1 5 5 H 1.48491 * 109.47138 * 29.99346 * 3 2 1 6 6 H 1.48503 * 109.47147 * 149.99886 * 3 2 1 7 7 C 1.37883 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99875 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99691 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.05579 * 59.96352 * 9 7 2 11 11 C 1.53869 * 110.03024 * 298.53861 * 9 7 2 12 12 C 1.54266 * 106.60031 * 240.71754 * 11 9 7 13 13 C 1.54894 * 104.31305 * 336.32486 * 12 11 9 14 14 H 1.08993 * 110.76071 * 279.69749 * 13 12 11 15 15 N 1.46892 * 110.75562 * 156.31936 * 13 12 11 16 16 C 1.46896 * 111.00038 * 86.45635 * 15 13 12 17 17 C 1.53002 * 109.47602 * 180.02562 * 16 15 13 18 18 C 1.53000 * 115.54996 * 34.32759 * 17 16 15 19 19 F 1.39901 * 109.46848 * 85.58518 * 18 17 16 20 20 F 1.39894 * 109.47016 * 205.58568 * 18 17 16 21 21 C 1.53002 * 117.49457 * 248.62545 * 17 16 15 22 22 C 1.52999 * 117.49934 * 180.02562 * 17 16 15 23 23 C 1.54266 * 110.02909 * 181.37581 * 9 7 2 24 24 H 0.96998 * 120.00289 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.02983 * 121.43506 * 11 9 7 26 26 H 1.08996 * 110.07773 * 0.02649 * 11 9 7 27 27 H 1.09002 * 110.48629 * 95.07240 * 12 11 9 28 28 H 1.08998 * 110.48744 * 217.58143 * 12 11 9 29 29 H 1.00906 * 111.00506 * 210.41191 * 15 13 12 30 30 H 1.08999 * 109.47539 * 299.99883 * 16 15 13 31 31 H 1.09003 * 109.46898 * 59.99768 * 16 15 13 32 32 H 1.08994 * 109.46898 * 325.58625 * 18 17 16 33 33 H 1.08997 * 117.50608 * 359.97438 * 21 17 16 34 34 H 1.09006 * 117.49685 * 145.02062 * 21 17 16 35 35 H 1.09001 * 117.49719 * 214.97720 * 22 17 16 36 36 H 1.08998 * 117.49943 * 359.97438 * 22 17 16 37 37 H 1.09005 * 110.48526 * 261.57452 * 23 9 7 38 38 H 1.09006 * 110.48581 * 24.21645 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6205 -2.5668 -0.8861 11 6 0.3888 -2.6100 1.2702 12 6 0.8854 -3.8555 2.0329 13 6 1.5477 -4.7336 0.9422 14 1 0.7945 -5.2886 0.3830 15 7 2.5343 -5.6455 1.5361 16 6 1.8953 -6.8862 1.9946 17 6 2.9519 -7.8084 2.6063 18 6 4.0885 -7.1063 3.3520 19 9 3.6976 -6.8599 4.6725 20 9 5.2243 -7.9230 3.3465 21 6 3.2911 -9.0939 1.8491 22 6 2.4822 -9.1610 3.1455 23 6 2.2415 -3.6813 0.0360 24 1 -0.4850 0.8400 -0.0004 25 1 -0.6601 -2.7314 0.9998 26 1 0.5145 -1.7199 1.8867 27 1 1.6161 -3.5727 2.7906 28 1 0.0477 -4.3822 2.4899 29 1 3.2817 -5.8421 0.8873 30 1 1.1409 -6.6506 2.7452 31 1 1.4226 -7.3855 1.1487 32 1 4.3177 -6.1618 2.8586 33 1 2.7614 -9.2829 0.9154 34 1 4.3244 -9.4396 1.8821 35 1 2.9830 -9.5508 4.0317 36 1 1.4204 -9.3937 3.0649 37 1 2.3932 -4.0821 -0.9663 38 1 3.1912 -3.3702 0.4713 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382141196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:26 Heat of formation + Delta-G solvation = -109.498349 kcal Electronic energy + Delta-G solvation = -19742.694140 eV Core-core repulsion = 16447.924829 eV Total energy + Delta-G solvation = -3294.769311 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.86241 -47.85961 -39.70604 -38.53789 -35.48696 -33.74198 -29.87315 -29.28865 -27.72235 -26.08923 -25.04644 -23.40837 -21.16955 -20.90621 -20.53790 -18.38075 -18.17646 -18.00777 -17.67829 -16.75439 -16.50014 -16.08288 -15.50519 -15.24764 -14.77865 -14.65834 -14.53007 -14.24841 -14.06363 -13.73934 -13.51601 -13.05048 -12.93957 -12.62276 -12.44730 -12.39234 -12.22469 -11.87211 -11.68281 -11.62320 -11.45391 -11.25397 -11.09868 -10.89184 -10.68378 -10.43059 -9.37648 -8.10000 -6.19198 1.41373 1.42654 1.52505 2.44742 2.50042 2.83302 3.15502 3.21176 3.42826 3.55022 3.80940 3.82760 4.00490 4.15450 4.29103 4.36239 4.49159 4.60193 4.69086 4.71113 4.74772 4.88881 4.93124 4.96874 5.01745 5.10407 5.17817 5.21467 5.26194 5.49435 5.53477 5.70322 5.96265 5.97680 6.18205 6.43316 6.49762 6.93502 7.48085 8.98857 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.034398 B = 0.004225 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.807128 B = 6626.243339 C = 6909.376849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.950 3.050 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.527 4.527 8 H 0.053 0.947 9 C 0.036 3.964 10 H -0.007 1.007 11 C -0.084 4.084 12 C -0.101 4.101 13 C 0.097 3.903 14 H 0.052 0.948 15 N -0.686 5.686 16 C 0.106 3.894 17 C -0.200 4.200 18 C 0.295 3.705 19 F -0.217 7.217 20 F -0.215 7.215 21 C -0.144 4.144 22 C -0.152 4.152 23 C -0.103 4.103 24 H 0.259 0.741 25 H 0.021 0.979 26 H 0.028 0.972 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.349 0.651 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.134 0.866 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.055 0.945 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.383 -18.372 4.198 19.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.565 4.565 8 H 0.071 0.929 9 C 0.017 3.983 10 H 0.011 0.989 11 C -0.123 4.123 12 C -0.139 4.139 13 C -0.012 4.012 14 H 0.070 0.930 15 N -0.318 5.318 16 C -0.023 4.023 17 C -0.201 4.201 18 C 0.241 3.759 19 F -0.199 7.199 20 F -0.197 7.197 21 C -0.180 4.180 22 C -0.189 4.189 23 C -0.141 4.141 24 H 0.068 0.932 25 H 0.040 0.960 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.168 0.832 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.151 0.849 33 H 0.136 0.864 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.135 0.865 37 H 0.074 0.926 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.233 -17.967 4.848 19.331 hybrid contribution -0.045 0.927 -0.694 1.159 sum 5.187 -17.040 4.154 18.290 Atomic orbital electron populations 1.70105 1.07252 1.27049 1.51665 1.25748 0.95613 1.02377 0.95128 0.85674 0.78834 0.79699 0.78188 1.20142 1.21178 1.19214 1.21645 0.92908 0.91996 1.49975 0.92851 1.19207 0.93058 0.92902 0.93094 0.98891 1.21825 0.96946 0.95771 0.97721 1.22293 0.98910 0.95331 0.97402 1.22366 0.92861 0.92132 0.93838 0.92966 1.60424 1.12937 1.13847 1.44613 1.21392 0.93991 0.88158 0.98755 1.22460 0.99895 0.91058 1.06722 1.21387 0.81072 0.94536 0.78895 1.92937 1.91462 1.95174 1.40288 1.92913 1.53901 1.76253 1.96590 1.23269 1.02340 0.95633 0.96796 1.23082 1.02126 0.95424 0.98306 1.22493 0.98910 0.94960 0.97707 0.93248 0.96008 0.95264 0.92324 0.92353 0.83226 0.90908 0.92689 0.84861 0.86376 0.87618 0.88507 0.86496 0.92617 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.29 12.33 21.45 0.26 -54.03 16 2 C 0.01 0.54 5.07 84.66 0.43 0.97 16 3 Si 0.95 44.08 29.54 68.60 2.03 46.11 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.53 -29.10 8.34 25.60 0.21 -28.89 16 8 H 0.05 2.89 7.55 -2.91 -0.02 2.86 16 9 C 0.04 1.81 2.85 -10.82 -0.03 1.78 16 10 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 11 C -0.08 -3.98 5.55 31.32 0.17 -3.81 16 12 C -0.10 -3.74 6.44 31.67 0.20 -3.54 16 13 C 0.10 3.09 3.20 46.33 0.15 3.24 16 14 H 0.05 1.59 7.91 -2.39 -0.02 1.57 16 15 N -0.69 -17.11 4.89 -484.32 -2.37 -19.48 16 16 C 0.11 2.19 5.68 86.30 0.49 2.68 16 17 C -0.20 -3.74 2.26 -52.18 -0.12 -3.85 16 18 C 0.29 6.63 5.22 71.98 0.38 7.00 16 19 F -0.22 -5.90 17.29 44.97 0.78 -5.12 16 20 F -0.22 -4.98 15.92 44.97 0.72 -4.27 16 21 C -0.14 -2.08 9.56 30.58 0.29 -1.79 16 22 C -0.15 -2.37 9.90 30.58 0.30 -2.07 16 23 C -0.10 -3.94 5.81 31.79 0.18 -3.76 16 24 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 25 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.03 1.55 7.17 -2.39 -0.02 1.54 16 27 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.35 7.67 8.39 -89.69 -0.75 6.92 16 30 H 0.07 1.65 8.13 -2.39 -0.02 1.63 16 31 H 0.06 0.99 7.85 -2.39 -0.02 0.98 16 32 H 0.13 2.97 6.70 -2.39 -0.02 2.95 16 33 H 0.12 1.37 8.05 -2.39 -0.02 1.35 16 34 H 0.11 1.56 7.22 -2.38 -0.02 1.54 16 35 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.06 2.42 7.68 -2.38 -0.02 2.40 16 Total: -1.00 -61.41 313.12 4.38 -57.03 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.29 Total: 11.80 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 2.67 Total: -32.04 kcal Atomic # 7 Polarization: -71.40 SS G_CDS: -2.10 Total: -73.51 kcal Atomic # 9 Polarization: -10.88 SS G_CDS: 1.49 Total: -9.39 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -61.41 4.38 -57.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382141196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.464 kcal (2) G-P(sol) polarization free energy of solvation -61.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds