Wall clock time and date at job start Mon Mar 30 2020 06:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.01552 * 58.60889 * 9 7 2 11 11 C 1.54271 * 110.03177 * 297.16858 * 9 7 2 12 12 C 1.54894 * 104.19638 * 217.10647 * 11 9 7 13 13 C 1.54892 * 102.74872 * 37.93795 * 12 11 9 14 14 H 1.09002 * 110.59470 * 80.79524 * 13 12 11 15 15 N 1.46897 * 110.48597 * 203.38108 * 13 12 11 16 16 C 1.46904 * 110.99683 * 269.77643 * 15 13 12 17 17 C 1.53001 * 109.46589 * 180.02562 * 16 15 13 18 18 C 1.52998 * 115.55078 * 34.33279 * 17 16 15 19 19 F 1.39901 * 109.47334 * 325.57880 * 18 17 16 20 20 F 1.39903 * 109.47421 * 85.58292 * 18 17 16 21 21 C 1.53000 * 117.49975 * 248.61955 * 17 16 15 22 22 C 1.52991 * 60.00153 * 252.51354 * 21 17 16 23 23 C 1.53867 * 110.03439 * 180.02562 * 9 7 2 24 24 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 25 25 H 1.08999 * 110.48745 * 335.78247 * 11 9 7 26 26 H 1.09002 * 110.48736 * 98.42811 * 11 9 7 27 27 H 1.09000 * 110.74936 * 279.63049 * 12 11 9 28 28 H 1.09000 * 110.91698 * 156.32940 * 12 11 9 29 29 H 1.00901 * 111.00174 * 33.73228 * 15 13 12 30 30 H 1.09001 * 109.47411 * 300.00052 * 16 15 13 31 31 H 1.08994 * 109.47037 * 60.00420 * 16 15 13 32 32 H 1.09008 * 109.46975 * 205.57961 * 18 17 16 33 33 H 1.09004 * 117.49967 * 0.02562 * 21 17 16 34 34 H 1.09002 * 117.49970 * 145.01919 * 21 17 16 35 35 H 1.09000 * 117.50427 * 252.50916 * 22 21 17 36 36 H 1.09000 * 117.49756 * 107.48844 * 22 21 17 37 37 H 1.09007 * 110.03343 * 238.56977 * 23 9 7 38 38 H 1.09005 * 110.03700 * 359.95074 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6020 -2.5553 -0.8746 11 6 0.4140 -2.6262 1.2892 12 6 0.5056 -4.1285 1.6551 13 6 1.9686 -4.4811 1.2882 14 1 2.6484 -4.1696 2.0813 15 7 2.1020 -5.9218 1.0346 16 6 2.4377 -6.6446 2.2687 17 6 2.5687 -8.1385 1.9651 18 6 3.1414 -8.4845 0.5892 19 9 2.7189 -7.5323 -0.3447 20 9 4.5390 -8.4870 0.6529 21 6 1.5039 -9.0729 2.5429 22 6 2.9169 -9.0681 3.1293 23 6 2.2392 -3.6785 -0.0005 24 1 -0.4850 0.8401 0.0004 25 1 0.8413 -2.0136 2.0831 26 1 -0.6214 -2.3416 1.1018 27 1 -0.1940 -4.7144 1.0590 28 1 0.3266 -4.2815 2.7193 29 1 1.2639 -6.2942 0.6140 30 1 3.3821 -6.2703 2.6637 31 1 1.6493 -6.4911 3.0055 32 1 2.7898 -9.4710 0.2868 33 1 0.7097 -8.6234 3.1390 34 1 1.2109 -9.9343 1.9427 35 1 3.5538 -9.9263 2.9150 36 1 3.0526 -8.6154 4.1115 37 1 2.0697 -4.3077 -0.8744 38 1 3.2640 -3.3070 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382141199.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:28 Heat of formation + Delta-G solvation = -93.532899 kcal Electronic energy + Delta-G solvation = -19971.924741 eV Core-core repulsion = 16677.847744 eV Total energy + Delta-G solvation = -3294.076997 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.57939 -47.60906 -39.70887 -38.60168 -35.46130 -33.68463 -29.88217 -29.05178 -27.63287 -26.19963 -24.86880 -23.34503 -21.55216 -21.02444 -20.28751 -18.53138 -18.08926 -17.75801 -17.50838 -16.67254 -16.40727 -16.06506 -15.31366 -15.09230 -14.59940 -14.47767 -14.12195 -14.07085 -14.00883 -13.57050 -13.50934 -13.14313 -12.99443 -12.68366 -12.51964 -12.38437 -12.34464 -11.98174 -11.55659 -11.47048 -11.43173 -11.22859 -11.04017 -10.96858 -10.74278 -10.45637 -9.06181 -8.11291 -6.20672 1.39898 1.40416 1.51256 2.43634 2.57971 3.01042 3.14215 3.20144 3.47445 3.74372 3.83783 3.89427 4.02785 4.12261 4.30605 4.35557 4.50805 4.63794 4.71466 4.76596 4.78306 4.89657 4.93464 4.97736 5.00697 5.07091 5.18523 5.21705 5.27639 5.42368 5.51462 5.67782 5.95016 5.99459 6.21824 6.43272 6.60703 6.91155 7.46273 8.97542 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.038254 B = 0.004381 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.776705 B = 6389.630818 C = 6680.469248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.283 1.283 7 C -0.531 4.531 8 H 0.049 0.951 9 C 0.035 3.965 10 H -0.008 1.008 11 C -0.080 4.080 12 C -0.139 4.139 13 C 0.098 3.902 14 H 0.067 0.933 15 N -0.672 5.672 16 C 0.098 3.902 17 C -0.214 4.214 18 C 0.299 3.701 19 F -0.195 7.195 20 F -0.224 7.224 21 C -0.141 4.141 22 C -0.143 4.143 23 C -0.091 4.091 24 H 0.260 0.740 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.347 0.653 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.136 0.864 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.049 0.951 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.737 -21.025 6.700 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.208 1.208 7 C -0.569 4.569 8 H 0.068 0.932 9 C 0.016 3.984 10 H 0.010 0.990 11 C -0.119 4.119 12 C -0.178 4.178 13 C -0.012 4.012 14 H 0.085 0.915 15 N -0.304 5.304 16 C -0.031 4.031 17 C -0.215 4.215 18 C 0.245 3.755 19 F -0.176 7.176 20 F -0.205 7.205 21 C -0.178 4.178 22 C -0.181 4.181 23 C -0.130 4.130 24 H 0.068 0.932 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.167 0.833 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.153 0.847 33 H 0.125 0.875 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.068 0.932 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.282 -20.846 6.453 22.068 hybrid contribution -0.452 1.626 0.174 1.696 sum 2.830 -19.220 6.626 20.527 Atomic orbital electron populations 1.70103 1.07208 1.27097 1.51589 1.25770 0.95687 1.02383 0.94935 0.85641 0.78747 0.79524 0.78286 1.20000 1.19427 1.20816 1.21681 0.92733 0.92210 1.50319 0.93238 1.19261 0.93061 0.92719 0.93340 0.98980 1.21958 0.98419 0.93609 0.97926 1.23127 0.97405 0.96997 1.00284 1.22209 0.94803 0.87625 0.96545 0.91451 1.60913 1.42352 1.01572 1.25540 1.21431 1.00277 0.89949 0.91468 1.22540 1.09435 0.94309 0.95214 1.21512 0.74661 0.92473 0.86813 1.93028 1.89270 1.67942 1.67338 1.92934 1.33201 1.97450 1.96937 1.23321 0.92309 0.99986 1.02147 1.23086 0.98857 0.99983 0.96130 1.22046 0.98461 0.95497 0.96968 0.93157 0.95137 0.95118 0.91574 0.91612 0.83326 0.91990 0.93722 0.84723 0.87459 0.86054 0.86772 0.87447 0.93242 0.94199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.23 12.43 21.45 0.27 -54.97 16 2 C 0.01 0.61 5.33 84.66 0.45 1.06 16 3 Si 0.95 45.15 29.54 68.60 2.03 47.18 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 5 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.53 -30.74 8.36 25.60 0.21 -30.53 16 8 H 0.05 2.84 7.33 -2.91 -0.02 2.82 16 9 C 0.04 1.85 2.82 -10.82 -0.03 1.82 16 10 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 11 C -0.08 -3.89 5.44 31.67 0.17 -3.72 16 12 C -0.14 -5.09 6.46 31.89 0.21 -4.88 16 13 C 0.10 3.58 3.18 45.98 0.15 3.73 16 14 H 0.07 2.51 7.82 -2.39 -0.02 2.49 16 15 N -0.67 -20.22 3.81 -486.11 -1.85 -22.07 16 16 C 0.10 2.35 5.68 86.30 0.49 2.84 16 17 C -0.21 -3.84 2.23 -52.18 -0.12 -3.96 16 18 C 0.30 6.09 5.34 71.98 0.38 6.47 16 19 F -0.19 -5.43 13.73 44.97 0.62 -4.81 16 20 F -0.22 -5.69 17.29 44.97 0.78 -4.91 16 21 C -0.14 -1.60 9.82 30.59 0.30 -1.30 16 22 C -0.14 -1.78 9.93 30.59 0.30 -1.48 16 23 C -0.09 -4.07 6.18 31.30 0.19 -3.88 16 24 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 25 H 0.03 1.56 7.85 -2.39 -0.02 1.54 16 26 H 0.03 1.58 7.97 -2.39 -0.02 1.56 16 27 H 0.07 2.27 7.79 -2.39 -0.02 2.25 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.35 9.92 7.37 -89.69 -0.66 9.26 16 30 H 0.06 1.64 8.08 -2.39 -0.02 1.62 16 31 H 0.04 0.99 7.90 -2.39 -0.02 0.97 16 32 H 0.14 1.65 7.90 -2.38 -0.02 1.63 16 33 H 0.11 1.19 8.05 -2.38 -0.02 1.17 16 34 H 0.12 0.89 8.05 -2.39 -0.02 0.87 16 35 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.11 1.27 8.14 -2.39 -0.02 1.26 16 37 H 0.05 2.15 8.04 -2.38 -0.02 2.13 16 38 H 0.04 1.85 7.37 -2.38 -0.02 1.83 16 Total: -1.00 -66.23 311.28 4.94 -61.30 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.38 Total: 12.10 kcal Atomic # 6 Polarization: -36.53 SS G_CDS: 2.72 Total: -33.82 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -1.59 Total: -77.04 kcal Atomic # 9 Polarization: -11.12 SS G_CDS: 1.40 Total: -9.72 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -66.23 4.94 -61.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382141199.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.237 kcal (2) G-P(sol) polarization free energy of solvation -66.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds