Wall clock time and date at job start Mon Mar 30 2020 06:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38035 * 119.82453 * 2 1 4 4 C 1.38792 * 120.15593 * 180.02562 * 3 2 1 5 5 N 1.39318 * 120.10030 * 179.97438 * 4 3 2 6 6 C 1.40345 * 119.80533 * 359.97438 * 4 3 2 7 7 C 1.43197 * 120.17155 * 180.02562 * 6 4 3 8 8 N 4.81432 * 136.84422 * 359.97438 * 3 1 2 9 9 C 1.39697 * 119.65189 * 0.02562 * 6 4 3 10 10 C 1.38433 * 119.84546 * 359.97438 * 9 6 4 11 11 N 1.40014 * 119.90151 * 180.02562 * 10 9 6 12 12 C 1.46899 * 111.00045 * 66.95140 * 11 10 9 13 13 C 1.46899 * 110.99867 * 302.99338 * 11 10 9 14 14 H 1.08999 * 109.47232 * 65.23104 * 13 11 10 15 15 C 1.53002 * 109.47101 * 185.23099 * 13 11 10 16 16 C 1.50697 * 109.47421 * 305.23212 * 13 11 10 17 17 H 1.07998 * 120.00109 * 359.97438 * 16 13 11 18 18 C 1.37883 * 120.00006 * 180.02562 * 16 13 11 19 19 N 1.31513 * 119.99712 * 359.97438 * 18 16 13 20 20 Si 1.86802 * 119.99972 * 179.97438 * 18 16 13 21 21 H 1.48495 * 109.47096 * 89.99738 * 20 18 16 22 22 H 1.48497 * 109.47204 * 209.99834 * 20 18 16 23 23 H 1.48506 * 109.46891 * 330.00060 * 20 18 16 24 24 H 1.08993 * 109.47342 * 90.00243 * 1 2 3 25 25 H 1.09004 * 109.46852 * 209.99548 * 1 2 3 26 26 H 1.08998 * 109.47023 * 329.99492 * 1 2 3 27 27 H 1.08003 * 119.92125 * 0.28242 * 3 2 1 28 28 H 0.96993 * 120.00042 * 0.02562 * 5 4 3 29 29 H 0.97002 * 119.99935 * 179.97438 * 5 4 3 30 30 H 1.07998 * 120.07616 * 180.02562 * 9 6 4 31 31 H 1.08995 * 109.46781 * 59.99850 * 12 11 10 32 32 H 1.08997 * 109.46956 * 180.02562 * 12 11 10 33 33 H 1.08996 * 109.46711 * 299.99795 * 12 11 10 34 34 H 1.08996 * 109.47004 * 178.86746 * 15 13 11 35 35 H 1.09000 * 109.46798 * 298.86766 * 15 13 11 36 36 H 1.09000 * 109.47006 * 58.86580 * 15 13 11 37 37 H 0.97009 * 119.99669 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.1975 0.0000 4 6 3.5814 1.2056 -0.0005 5 7 4.2731 2.4149 -0.0011 6 6 4.2860 -0.0082 -0.0005 7 6 5.7180 -0.0091 -0.0005 8 7 6.8540 -0.0098 0.0015 9 6 3.5831 -1.2154 -0.0005 10 6 2.1988 -1.2066 0.0000 11 7 1.4931 -2.4159 0.0005 12 6 1.6919 -3.1409 1.2626 13 6 1.8723 -3.2472 -1.1497 14 1 2.9173 -3.5424 -1.0558 15 6 0.9908 -4.4971 -1.1883 16 6 1.6848 -2.4608 -2.4215 17 1 1.3200 -1.4452 -2.3796 18 6 1.9780 -3.0383 -3.6387 19 7 2.4218 -4.2753 -3.6897 20 14 1.7449 -2.0638 -5.2152 21 1 2.9991 -1.3373 -5.5381 22 1 1.4103 -2.9913 -6.3256 23 1 0.6400 -1.0880 -5.0352 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6494 2.1304 0.0046 28 1 3.7848 3.2529 -0.0007 29 1 5.2431 2.4188 -0.0011 30 1 4.1184 -2.1534 -0.0001 31 1 1.3381 -2.5293 2.0925 32 1 1.1333 -4.0764 1.2360 33 1 2.7524 -3.3551 1.3952 34 1 1.2586 -5.1040 -2.0531 35 1 1.1415 -5.0763 -0.2772 36 1 -0.0558 -4.2015 -1.2619 37 1 2.6285 -4.6815 -4.5461 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383348160.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:51 Heat of formation + Delta-G solvation = 60.944522 kcal Electronic energy + Delta-G solvation = -19498.257235 eV Core-core repulsion = 16661.568067 eV Total energy + Delta-G solvation = -2836.689167 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.76215 -37.22941 -35.88525 -34.06997 -32.61177 -31.98437 -29.23900 -27.89250 -27.12235 -25.27901 -24.13200 -22.35246 -21.45762 -19.67732 -18.02093 -17.03596 -16.33899 -15.91247 -15.18424 -14.45811 -14.38104 -14.03936 -13.72921 -13.53505 -13.08258 -12.92249 -12.77047 -12.56015 -12.19788 -11.90505 -11.89334 -11.82133 -11.39721 -11.05466 -10.93301 -10.69484 -10.61610 -10.45188 -10.22938 -9.94603 -9.73599 -8.91517 -8.44897 -8.32705 -7.42533 -7.10397 -6.00581 -4.03889 1.30894 1.95830 2.96825 3.31611 3.34027 3.38816 3.41649 3.89483 4.27015 4.37184 4.42177 4.88137 5.18294 5.32874 5.47192 5.70878 5.81227 5.93822 6.07292 6.13862 6.23392 6.24779 6.36764 6.40591 6.47203 6.71443 6.82699 6.94369 7.01083 7.10107 7.22116 7.45255 7.50439 7.70333 7.77179 7.83512 7.88118 8.26084 8.31266 8.56287 9.02372 9.60964 11.06294 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.008143 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.860710 B = 3437.684479 C = 3814.590751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.012 3.988 3 C -0.202 4.202 4 C 0.251 3.749 5 N -0.875 5.875 6 C -0.120 4.120 7 C 0.272 3.728 8 N -0.453 5.453 9 C -0.041 4.041 10 C 0.085 3.915 11 N -0.501 5.501 12 C 0.027 3.973 13 C 0.214 3.786 14 H 0.002 0.998 15 C -0.134 4.134 16 C -0.497 4.497 17 H 0.064 0.936 18 C 0.061 3.939 19 N -0.894 5.894 20 Si 0.891 3.109 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.273 1.273 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.051 0.949 27 H 0.125 0.875 28 H 0.400 0.600 29 H 0.395 0.605 30 H 0.124 0.876 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.017 0.983 34 H 0.087 0.913 35 H 0.009 0.991 36 H 0.035 0.965 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 9.283 8.651 12.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.010 3.990 3 C -0.225 4.225 4 C 0.144 3.856 5 N -0.413 5.413 6 C -0.129 4.129 7 C -0.041 4.041 8 N -0.131 5.131 9 C -0.064 4.064 10 C -0.011 4.011 11 N -0.223 5.223 12 C -0.121 4.121 13 C 0.110 3.890 14 H 0.020 0.980 15 C -0.192 4.192 16 C -0.535 4.535 17 H 0.082 0.918 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.209 1.209 22 H -0.213 1.213 23 H -0.198 1.198 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.143 0.857 28 H 0.228 0.772 29 H 0.223 0.777 30 H 0.142 0.858 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.035 0.965 34 H 0.105 0.895 35 H 0.028 0.972 36 H 0.055 0.945 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.508 9.174 8.471 12.578 hybrid contribution 0.675 0.491 -1.076 1.362 sum -0.834 9.666 7.395 12.199 Atomic orbital electron populations 1.20692 0.90599 1.02051 1.02870 1.19771 0.96423 0.90873 0.91937 1.20201 0.90788 0.98184 1.13356 1.17469 0.91209 0.84552 0.92384 1.42390 1.08899 1.05214 1.84847 1.15351 0.83684 0.93438 1.20439 1.25745 0.92699 0.93286 0.92350 1.81179 1.12127 1.07741 1.12009 1.21463 0.95052 0.95791 0.94119 1.18189 0.88898 0.91830 1.02144 1.59960 1.55571 1.03347 1.03389 1.22404 0.98867 0.98866 0.91924 1.19386 0.93307 0.89995 0.86320 0.97997 1.21850 0.99121 0.98318 0.99873 1.21082 1.43241 0.99406 0.89809 0.91813 1.24878 0.95286 0.94913 0.98976 1.69877 1.45353 1.12731 1.25348 0.86592 0.78484 0.79867 0.83104 1.20864 1.21348 1.19768 0.90598 0.89983 0.92968 0.85672 0.77190 0.77747 0.85768 0.92733 0.91142 0.96476 0.89475 0.97192 0.94547 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.75 36.01 0.35 -1.16 16 2 C 0.01 0.20 5.66 -104.38 -0.59 -0.39 16 3 C -0.20 -2.83 9.51 -39.45 -0.38 -3.20 16 4 C 0.25 3.62 6.76 -83.46 -0.56 3.05 16 5 N -0.87 -9.64 9.00 32.60 0.29 -9.35 16 6 C -0.12 -2.01 5.75 -106.64 -0.61 -2.62 16 7 C 0.27 4.72 14.08 -22.48 -0.32 4.41 16 8 N -0.45 -8.34 18.54 41.84 0.78 -7.57 16 9 C -0.04 -0.76 8.33 -38.96 -0.32 -1.09 16 10 C 0.09 1.58 3.35 -83.73 -0.28 1.30 16 11 N -0.50 -9.84 3.53 -172.67 -0.61 -10.45 16 12 C 0.03 0.45 9.15 60.06 0.55 1.00 16 13 C 0.21 5.07 1.70 -68.87 -0.12 4.95 16 14 H 0.00 0.06 7.16 -51.93 -0.37 -0.31 16 15 C -0.13 -3.07 8.76 37.16 0.33 -2.75 16 16 C -0.50 -12.93 8.02 -34.44 -0.28 -13.21 16 17 H 0.06 1.67 7.00 -52.49 -0.37 1.30 16 18 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 19 N -0.89 -24.96 11.31 55.43 0.63 -24.33 16 20 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.08 1.23 7.43 -51.93 -0.39 0.84 16 26 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 27 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 28 H 0.40 3.24 8.84 -40.82 -0.36 2.88 16 29 H 0.39 4.34 7.68 -40.82 -0.31 4.03 16 30 H 0.12 2.41 7.04 -52.49 -0.37 2.04 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.15 6.16 -51.93 -0.32 0.83 16 33 H 0.02 0.28 7.51 -51.93 -0.39 -0.11 16 34 H 0.09 2.24 6.04 -51.93 -0.31 1.92 16 35 H 0.01 0.19 6.40 -51.93 -0.33 -0.14 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 309.54 15.07 4.66 4.66 Total: -1.00 -28.84 309.54 -6.37 -35.21 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.77 Total: 3.81 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -2.33 Total: -8.17 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 1.09 Total: -51.69 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.84 -6.37 -35.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383348160.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.153 kcal (2) G-P(sol) polarization free energy of solvation -28.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds