Wall clock time and date at job start Mon Mar 30 2020 06:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38035 * 119.82453 * 2 1 4 4 C 1.38792 * 120.15593 * 180.02562 * 3 2 1 5 5 N 1.39318 * 120.10030 * 179.97438 * 4 3 2 6 6 C 1.40345 * 119.80533 * 359.97438 * 4 3 2 7 7 C 1.43197 * 120.17155 * 180.02562 * 6 4 3 8 8 N 4.81432 * 136.84422 * 359.97438 * 3 1 2 9 9 C 1.39697 * 119.65189 * 0.02562 * 6 4 3 10 10 C 1.38433 * 119.84546 * 359.97438 * 9 6 4 11 11 N 1.40014 * 119.90151 * 180.02562 * 10 9 6 12 12 C 1.46899 * 111.00045 * 66.95140 * 11 10 9 13 13 C 1.46899 * 110.99867 * 302.99338 * 11 10 9 14 14 H 1.08999 * 109.47232 * 65.23104 * 13 11 10 15 15 C 1.53002 * 109.47101 * 185.23099 * 13 11 10 16 16 C 1.50697 * 109.47421 * 305.23212 * 13 11 10 17 17 H 1.07998 * 120.00109 * 359.97438 * 16 13 11 18 18 C 1.37883 * 120.00006 * 180.02562 * 16 13 11 19 19 N 1.31513 * 119.99712 * 359.97438 * 18 16 13 20 20 Si 1.86802 * 119.99972 * 179.97438 * 18 16 13 21 21 H 1.48495 * 109.47096 * 89.99738 * 20 18 16 22 22 H 1.48497 * 109.47204 * 209.99834 * 20 18 16 23 23 H 1.48506 * 109.46891 * 330.00060 * 20 18 16 24 24 H 1.08993 * 109.47342 * 90.00243 * 1 2 3 25 25 H 1.09004 * 109.46852 * 209.99548 * 1 2 3 26 26 H 1.08998 * 109.47023 * 329.99492 * 1 2 3 27 27 H 1.08003 * 119.92125 * 0.28242 * 3 2 1 28 28 H 0.96993 * 120.00042 * 0.02562 * 5 4 3 29 29 H 0.97002 * 119.99935 * 179.97438 * 5 4 3 30 30 H 1.07998 * 120.07616 * 180.02562 * 9 6 4 31 31 H 1.08995 * 109.46781 * 59.99850 * 12 11 10 32 32 H 1.08997 * 109.46956 * 180.02562 * 12 11 10 33 33 H 1.08996 * 109.46711 * 299.99795 * 12 11 10 34 34 H 1.08996 * 109.47004 * 178.86746 * 15 13 11 35 35 H 1.09000 * 109.46798 * 298.86766 * 15 13 11 36 36 H 1.09000 * 109.47006 * 58.86580 * 15 13 11 37 37 H 0.97009 * 119.99669 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.1975 0.0000 4 6 3.5814 1.2056 -0.0005 5 7 4.2731 2.4149 -0.0011 6 6 4.2860 -0.0082 -0.0005 7 6 5.7180 -0.0091 -0.0005 8 7 6.8540 -0.0098 0.0015 9 6 3.5831 -1.2154 -0.0005 10 6 2.1988 -1.2066 0.0000 11 7 1.4931 -2.4159 0.0005 12 6 1.6919 -3.1409 1.2626 13 6 1.8723 -3.2472 -1.1497 14 1 2.9173 -3.5424 -1.0558 15 6 0.9908 -4.4971 -1.1883 16 6 1.6848 -2.4608 -2.4215 17 1 1.3200 -1.4452 -2.3796 18 6 1.9780 -3.0383 -3.6387 19 7 2.4218 -4.2753 -3.6897 20 14 1.7449 -2.0638 -5.2152 21 1 2.9991 -1.3373 -5.5381 22 1 1.4103 -2.9913 -6.3256 23 1 0.6400 -1.0880 -5.0352 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6494 2.1304 0.0046 28 1 3.7848 3.2529 -0.0007 29 1 5.2431 2.4188 -0.0011 30 1 4.1184 -2.1534 -0.0001 31 1 1.3381 -2.5293 2.0925 32 1 1.1333 -4.0764 1.2360 33 1 2.7524 -3.3551 1.3952 34 1 1.2586 -5.1040 -2.0531 35 1 1.1415 -5.0763 -0.2772 36 1 -0.0558 -4.2015 -1.2619 37 1 2.6285 -4.6815 -4.5461 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383348160.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:51 Heat of formation + Delta-G solvation = 43.428663 kcal Electronic energy + Delta-G solvation = -19499.016779 eV Core-core repulsion = 16661.568067 eV Total energy + Delta-G solvation = -2837.448712 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.07149 -38.66536 -37.28071 -35.46088 -34.35684 -33.24686 -30.97838 -29.20717 -28.38727 -27.04379 -25.74720 -23.74143 -22.71224 -21.31292 -19.40086 -18.40421 -17.90473 -17.24858 -16.89011 -15.98926 -15.68992 -15.58089 -15.09552 -14.95598 -14.71733 -14.29068 -14.05312 -13.89315 -13.69246 -13.59460 -13.15650 -13.06160 -12.90221 -12.62462 -12.52335 -12.36479 -12.30849 -12.14605 -12.01377 -11.68649 -11.06144 -10.81165 -10.47516 -9.56982 -9.01788 -8.31038 -8.04235 -6.12753 0.01554 0.69690 1.42940 1.44739 1.53657 1.58958 1.99156 2.46463 2.87564 2.96337 3.06484 3.26072 3.43132 3.93115 4.25808 4.50982 4.61535 4.65429 4.74908 4.89937 4.91624 4.99491 5.05507 5.13929 5.16610 5.19378 5.22790 5.30686 5.47668 5.59133 5.78960 5.83394 5.92071 5.98386 6.34556 6.41312 6.45716 6.59814 6.85962 6.92202 7.07203 7.55097 9.01417 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.008143 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.860710 B = 3437.684479 C = 3814.590751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.010 3.990 3 C -0.191 4.191 4 C 0.266 3.734 5 N -0.856 5.856 6 C -0.138 4.138 7 C 0.283 3.717 8 N -0.478 5.478 9 C -0.057 4.057 10 C 0.056 3.944 11 N -0.497 5.497 12 C 0.027 3.973 13 C 0.220 3.780 14 H -0.035 1.035 15 C -0.123 4.123 16 C -0.496 4.496 17 H 0.062 0.938 18 C 0.011 3.989 19 N -0.923 5.923 20 Si 0.945 3.055 21 H -0.286 1.286 22 H -0.287 1.287 23 H -0.261 1.261 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.167 0.833 28 H 0.418 0.582 29 H 0.397 0.603 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.010 0.990 34 H 0.057 0.943 35 H 0.031 0.969 36 H 0.037 0.963 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.121 12.117 9.265 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.007 3.993 3 C -0.213 4.213 4 C 0.156 3.844 5 N -0.395 5.395 6 C -0.148 4.148 7 C -0.029 4.029 8 N -0.156 5.156 9 C -0.081 4.081 10 C -0.040 4.040 11 N -0.218 5.218 12 C -0.120 4.120 13 C 0.115 3.885 14 H -0.018 1.018 15 C -0.181 4.181 16 C -0.535 4.535 17 H 0.080 0.920 18 C -0.187 4.187 19 N -0.564 5.564 20 Si 0.772 3.228 21 H -0.213 1.213 22 H -0.213 1.213 23 H -0.185 1.185 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.108 0.892 27 H 0.184 0.816 28 H 0.250 0.750 29 H 0.225 0.775 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.028 0.972 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.854 12.064 9.103 15.380 hybrid contribution 1.111 -0.306 -1.185 1.652 sum -1.743 11.758 7.919 14.283 Atomic orbital electron populations 1.20700 0.89152 1.03491 1.02486 1.20054 0.97554 0.90574 0.91125 1.20571 0.90464 0.98987 1.11325 1.17545 0.91621 0.84684 0.90544 1.42383 1.09191 1.04939 1.82996 1.15381 0.83236 0.94015 1.22136 1.25876 0.92792 0.92609 0.91650 1.81177 1.12740 1.08495 1.13220 1.21297 0.95366 0.95555 0.95852 1.18365 0.88931 0.92190 1.04530 1.59881 1.55439 1.03446 1.03020 1.22472 0.98640 0.99311 0.91565 1.19130 0.91263 0.90607 0.87550 1.01765 1.21670 0.98807 0.98016 0.99644 1.21336 1.42016 0.99346 0.90761 0.91966 1.25592 0.95560 0.95737 1.01828 1.70015 1.46689 1.14047 1.25639 0.85736 0.78379 0.78800 0.79890 1.21271 1.21321 1.18465 0.91704 0.90967 0.89220 0.81579 0.74990 0.77454 0.88356 0.90061 0.90926 0.97154 0.92380 0.95025 0.94412 0.93352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.59 9.75 71.24 0.69 -1.90 16 2 C 0.01 0.28 5.66 -19.71 -0.11 0.17 16 3 C -0.19 -4.56 9.51 22.35 0.21 -4.35 16 4 C 0.27 6.89 6.76 38.60 0.26 7.15 16 5 N -0.86 -15.77 9.00 -50.77 -0.46 -16.23 16 6 C -0.14 -4.53 5.75 -21.17 -0.12 -4.65 16 7 C 0.28 9.78 14.08 88.33 1.24 11.02 16 8 N -0.48 -17.62 18.54 19.00 0.35 -17.26 16 9 C -0.06 -2.17 8.33 22.67 0.19 -1.98 16 10 C 0.06 2.04 3.35 38.08 0.13 2.17 16 11 N -0.50 -19.48 3.53 -700.20 -2.47 -21.95 16 12 C 0.03 0.89 9.15 127.69 1.17 2.06 16 13 C 0.22 10.67 1.70 44.17 0.08 10.74 16 14 H -0.04 -1.94 7.16 -2.39 -0.02 -1.95 16 15 C -0.12 -5.77 8.76 71.98 0.63 -5.14 16 16 C -0.50 -26.09 8.02 25.60 0.21 -25.89 16 17 H 0.06 3.23 7.00 -2.91 -0.02 3.21 16 18 C 0.01 0.58 5.30 84.66 0.45 1.03 16 19 N -0.92 -53.03 11.31 21.45 0.24 -52.78 16 20 Si 0.95 43.57 29.54 68.60 2.03 45.59 16 21 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 22 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 24 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.07 1.98 7.43 -2.38 -0.02 1.97 16 26 H 0.09 1.59 8.08 -2.39 -0.02 1.57 16 27 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 28 H 0.42 4.82 8.84 -92.71 -0.82 4.00 16 29 H 0.40 7.59 7.68 -92.71 -0.71 6.88 16 30 H 0.10 4.10 7.04 -2.91 -0.02 4.08 16 31 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 32 H 0.07 2.32 6.16 -2.39 -0.01 2.31 16 33 H 0.01 0.34 7.51 -2.39 -0.02 0.32 16 34 H 0.06 3.07 6.04 -2.39 -0.01 3.05 16 35 H 0.03 1.29 6.40 -2.39 -0.02 1.28 16 36 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 Total: -1.00 -63.65 309.54 4.30 -59.35 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -0.42 Total: 12.84 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 5.02 Total: -9.56 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -2.33 Total: -108.23 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -63.65 4.30 -59.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383348160.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.780 kcal (2) G-P(sol) polarization free energy of solvation -63.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds