Wall clock time and date at job start Mon Mar 30 2020 06:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38042 * 119.82707 * 2 1 4 4 C 1.38797 * 120.15188 * 180.28067 * 3 2 1 5 5 N 1.39325 * 120.09415 * 179.76251 * 4 3 2 6 6 C 1.40331 * 119.80594 * 359.74072 * 4 3 2 7 7 C 1.43197 * 120.16973 * 180.02562 * 6 4 3 8 8 N 4.81433 * 136.84046 * 0.28220 * 3 1 2 9 9 C 1.39695 * 119.65834 * 0.02562 * 6 4 3 10 10 C 1.38430 * 119.84535 * 0.02562 * 9 6 4 11 11 N 1.40008 * 119.90840 * 179.97438 * 10 9 6 12 12 C 1.46900 * 110.99682 * 295.15908 * 11 10 9 13 13 C 1.46906 * 110.99946 * 59.11099 * 11 10 9 14 14 H 1.09010 * 109.46661 * 296.31287 * 13 11 10 15 15 C 1.52994 * 109.46939 * 176.31383 * 13 11 10 16 16 C 1.50697 * 109.47458 * 56.31001 * 13 11 10 17 17 H 1.08005 * 119.99591 * 0.02562 * 16 13 11 18 18 C 1.37866 * 120.00308 * 179.72531 * 16 13 11 19 19 N 1.31519 * 120.00196 * 0.27580 * 18 16 13 20 20 Si 1.86804 * 120.00194 * 180.27779 * 18 16 13 21 21 H 1.48497 * 109.47216 * 60.00159 * 20 18 16 22 22 H 1.48501 * 109.47252 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46793 * 299.99808 * 20 18 16 24 24 H 1.09006 * 109.47306 * 270.23829 * 1 2 3 25 25 H 1.09002 * 109.47759 * 30.23560 * 1 2 3 26 26 H 1.09000 * 109.47197 * 150.23734 * 1 2 3 27 27 H 1.07998 * 119.92234 * 359.97438 * 3 2 1 28 28 H 0.96998 * 119.99657 * 179.97438 * 5 4 3 29 29 H 0.96997 * 120.00032 * 359.97335 * 5 4 3 30 30 H 1.07996 * 120.08002 * 180.02562 * 9 6 4 31 31 H 1.09001 * 109.46534 * 183.95325 * 12 11 10 32 32 H 1.09004 * 109.46902 * 303.94680 * 12 11 10 33 33 H 1.08994 * 109.47550 * 63.95601 * 12 11 10 34 34 H 1.09006 * 109.46755 * 185.72018 * 15 13 11 35 35 H 1.08999 * 109.47170 * 305.71450 * 15 13 11 36 36 H 1.08998 * 109.47227 * 65.72203 * 15 13 11 37 37 H 0.96996 * 120.00466 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1935 1.1976 0.0000 4 6 3.5814 1.2054 -0.0059 5 7 4.2732 2.4148 -0.0109 6 6 4.2859 -0.0083 -0.0063 7 6 5.7178 -0.0092 -0.0118 8 7 6.8539 -0.0100 -0.0162 9 6 3.5830 -1.2155 -0.0014 10 6 2.1987 -1.2067 0.0034 11 7 1.4929 -2.4158 0.0078 12 6 1.7268 -3.1664 -1.2331 13 6 1.8396 -3.2235 1.1849 14 1 2.8938 -3.4973 1.1399 15 6 0.9837 -4.4915 1.2034 16 6 1.5811 -2.4246 2.4363 17 1 1.1972 -1.4176 2.3643 18 6 1.8288 -2.9812 3.6730 19 7 2.2959 -4.2075 3.7606 20 14 1.5011 -1.9935 5.2244 21 1 0.0646 -1.6211 5.2799 22 1 1.8459 -2.8121 6.4144 23 1 2.3316 -0.7626 5.2121 24 1 -0.3634 0.0043 1.0277 25 1 -0.3635 0.8878 -0.5175 26 1 -0.3633 -0.8921 -0.5101 27 1 1.6494 2.1305 -0.0004 28 1 5.2431 2.4187 -0.0146 29 1 3.7848 3.2529 -0.0106 30 1 4.1182 -2.1535 -0.0013 31 1 1.1129 -4.0670 -1.2341 32 1 1.4619 -2.5452 -2.0888 33 1 2.7789 -3.4438 -1.2972 34 1 1.1673 -5.0402 2.1272 35 1 -0.0702 -4.2193 1.1459 36 1 1.2443 -5.1182 0.3506 37 1 2.4705 -4.5990 4.6307 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383348163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:53 Heat of formation + Delta-G solvation = 60.528187 kcal Electronic energy + Delta-G solvation = -19489.511684 eV Core-core repulsion = 16652.804463 eV Total energy + Delta-G solvation = -2836.707221 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.76347 -37.23076 -35.88968 -34.07200 -32.62859 -31.98310 -29.23572 -27.88878 -27.10187 -25.29680 -24.13947 -22.33561 -21.46220 -19.68712 -18.02237 -17.04764 -16.32839 -15.92300 -15.17100 -14.46072 -14.39964 -14.04026 -13.73302 -13.54125 -13.08078 -12.92335 -12.76568 -12.56609 -12.16683 -11.90193 -11.88657 -11.83785 -11.39305 -11.06103 -10.92856 -10.71377 -10.62905 -10.43013 -10.24477 -9.95439 -9.73140 -8.94193 -8.43113 -8.32876 -7.41695 -7.12223 -5.99971 -4.03856 1.30317 1.95250 2.95904 3.32244 3.34258 3.37952 3.40651 3.89125 4.26105 4.36710 4.42155 4.88266 5.17765 5.32980 5.46958 5.70607 5.81031 5.93406 6.07918 6.13431 6.22744 6.25424 6.36511 6.41777 6.47400 6.71421 6.81331 6.94685 7.00659 7.10443 7.21723 7.44058 7.50134 7.69861 7.77327 7.83311 7.87409 8.27629 8.31743 8.56132 9.02159 9.60966 11.06560 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.015750 B = 0.007996 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.299192 B = 3500.799020 C = 3828.071555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.014 3.986 3 C -0.202 4.202 4 C 0.252 3.748 5 N -0.875 5.875 6 C -0.120 4.120 7 C 0.272 3.728 8 N -0.453 5.453 9 C -0.043 4.043 10 C 0.085 3.915 11 N -0.501 5.501 12 C 0.028 3.972 13 C 0.215 3.785 14 H 0.003 0.997 15 C -0.135 4.135 16 C -0.497 4.497 17 H 0.063 0.937 18 C 0.060 3.940 19 N -0.894 5.894 20 Si 0.892 3.108 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.278 1.278 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.082 0.918 27 H 0.126 0.874 28 H 0.395 0.605 29 H 0.400 0.600 30 H 0.124 0.876 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.017 0.983 34 H 0.089 0.911 35 H 0.035 0.965 36 H 0.008 0.992 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 9.166 -8.725 12.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.011 3.989 3 C -0.225 4.225 4 C 0.144 3.856 5 N -0.413 5.413 6 C -0.129 4.129 7 C -0.041 4.041 8 N -0.131 5.131 9 C -0.067 4.067 10 C -0.011 4.011 11 N -0.223 5.223 12 C -0.120 4.120 13 C 0.111 3.889 14 H 0.020 0.980 15 C -0.193 4.193 16 C -0.535 4.535 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.203 1.203 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.143 0.857 28 H 0.223 0.777 29 H 0.228 0.772 30 H 0.142 0.858 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.035 0.965 34 H 0.107 0.893 35 H 0.054 0.946 36 H 0.027 0.973 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.223 9.059 -8.557 12.522 hybrid contribution 0.610 0.501 1.075 1.334 sum -0.614 9.560 -7.482 12.155 Atomic orbital electron populations 1.20699 0.90578 1.02088 1.02881 1.19775 0.96440 0.90856 0.91792 1.20210 0.90790 0.98202 1.13291 1.17469 0.91213 0.84554 0.92354 1.42392 1.08899 1.05217 1.84836 1.15342 0.83675 0.93437 1.20451 1.25751 0.92698 0.93290 0.92348 1.81183 1.12114 1.07738 1.12020 1.21461 0.95057 0.95783 0.94352 1.18199 0.88878 0.91889 1.02119 1.59983 1.55576 1.03264 1.03441 1.22386 0.98877 0.98479 0.92221 1.19386 0.93587 0.90205 0.85733 0.97986 1.21856 0.98737 0.97841 1.00881 1.21048 1.42826 1.00080 0.89573 0.91851 1.24876 0.95302 0.94947 0.98945 1.69860 1.45321 1.13757 1.24412 0.86652 0.78758 0.80056 0.82561 1.20181 1.21460 1.20318 0.90567 0.92973 0.89938 0.85655 0.77750 0.77180 0.85812 0.91238 0.92769 0.96457 0.89263 0.94629 0.97267 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 9.75 36.00 0.35 -1.17 16 2 C 0.01 0.22 5.59 -104.38 -0.58 -0.36 16 3 C -0.20 -2.83 9.52 -39.45 -0.38 -3.20 16 4 C 0.25 3.62 6.76 -83.46 -0.56 3.05 16 5 N -0.87 -9.64 9.00 32.60 0.29 -9.34 16 6 C -0.12 -2.00 5.75 -106.64 -0.61 -2.61 16 7 C 0.27 4.70 14.08 -22.47 -0.32 4.38 16 8 N -0.45 -8.29 18.54 41.84 0.78 -7.52 16 9 C -0.04 -0.80 8.36 -38.97 -0.33 -1.13 16 10 C 0.09 1.58 3.44 -83.74 -0.29 1.29 16 11 N -0.50 -9.84 3.53 -172.66 -0.61 -10.45 16 12 C 0.03 0.46 8.94 60.06 0.54 1.00 16 13 C 0.22 5.09 1.76 -68.87 -0.12 4.97 16 14 H 0.00 0.07 7.20 -51.92 -0.37 -0.31 16 15 C -0.14 -3.11 8.61 37.15 0.32 -2.79 16 16 C -0.50 -12.92 8.05 -34.45 -0.28 -13.20 16 17 H 0.06 1.65 7.00 -52.48 -0.37 1.28 16 18 C 0.06 1.62 5.28 -17.82 -0.09 1.53 16 19 N -0.89 -24.97 11.28 55.43 0.63 -24.34 16 20 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 25 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 26 H 0.08 1.24 7.43 -51.93 -0.39 0.86 16 27 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 28 H 0.39 4.34 7.68 -40.82 -0.31 4.02 16 29 H 0.40 3.25 8.84 -40.82 -0.36 2.89 16 30 H 0.12 2.37 7.05 -52.49 -0.37 2.00 16 31 H 0.07 1.13 6.43 -51.93 -0.33 0.80 16 32 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 33 H 0.02 0.29 7.51 -51.93 -0.39 -0.10 16 34 H 0.09 2.30 5.93 -51.93 -0.31 1.99 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.01 0.18 6.72 -51.93 -0.35 -0.17 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 LS Contribution 309.77 15.07 4.67 4.67 Total: -1.00 -28.80 309.77 -6.42 -35.22 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -4.80 Total: 3.88 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -2.35 Total: -8.23 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 1.08 Total: -51.65 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.80 -6.42 -35.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383348163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.746 kcal (2) G-P(sol) polarization free energy of solvation -28.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds