Wall clock time and date at job start Mon Mar 30 2020 06:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38042 * 119.82707 * 2 1 4 4 C 1.38797 * 120.15188 * 180.28067 * 3 2 1 5 5 N 1.39325 * 120.09415 * 179.76251 * 4 3 2 6 6 C 1.40331 * 119.80594 * 359.74072 * 4 3 2 7 7 C 1.43197 * 120.16973 * 180.02562 * 6 4 3 8 8 N 4.81433 * 136.84046 * 0.28220 * 3 1 2 9 9 C 1.39695 * 119.65834 * 0.02562 * 6 4 3 10 10 C 1.38430 * 119.84535 * 0.02562 * 9 6 4 11 11 N 1.40008 * 119.90840 * 179.97438 * 10 9 6 12 12 C 1.46900 * 110.99682 * 295.15908 * 11 10 9 13 13 C 1.46906 * 110.99946 * 59.11099 * 11 10 9 14 14 H 1.09010 * 109.46661 * 296.31287 * 13 11 10 15 15 C 1.52994 * 109.46939 * 176.31383 * 13 11 10 16 16 C 1.50697 * 109.47458 * 56.31001 * 13 11 10 17 17 H 1.08005 * 119.99591 * 0.02562 * 16 13 11 18 18 C 1.37866 * 120.00308 * 179.72531 * 16 13 11 19 19 N 1.31519 * 120.00196 * 0.27580 * 18 16 13 20 20 Si 1.86804 * 120.00194 * 180.27779 * 18 16 13 21 21 H 1.48497 * 109.47216 * 60.00159 * 20 18 16 22 22 H 1.48501 * 109.47252 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46793 * 299.99808 * 20 18 16 24 24 H 1.09006 * 109.47306 * 270.23829 * 1 2 3 25 25 H 1.09002 * 109.47759 * 30.23560 * 1 2 3 26 26 H 1.09000 * 109.47197 * 150.23734 * 1 2 3 27 27 H 1.07998 * 119.92234 * 359.97438 * 3 2 1 28 28 H 0.96998 * 119.99657 * 179.97438 * 5 4 3 29 29 H 0.96997 * 120.00032 * 359.97335 * 5 4 3 30 30 H 1.07996 * 120.08002 * 180.02562 * 9 6 4 31 31 H 1.09001 * 109.46534 * 183.95325 * 12 11 10 32 32 H 1.09004 * 109.46902 * 303.94680 * 12 11 10 33 33 H 1.08994 * 109.47550 * 63.95601 * 12 11 10 34 34 H 1.09006 * 109.46755 * 185.72018 * 15 13 11 35 35 H 1.08999 * 109.47170 * 305.71450 * 15 13 11 36 36 H 1.08998 * 109.47227 * 65.72203 * 15 13 11 37 37 H 0.96996 * 120.00466 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1935 1.1976 0.0000 4 6 3.5814 1.2054 -0.0059 5 7 4.2732 2.4148 -0.0109 6 6 4.2859 -0.0083 -0.0063 7 6 5.7178 -0.0092 -0.0118 8 7 6.8539 -0.0100 -0.0162 9 6 3.5830 -1.2155 -0.0014 10 6 2.1987 -1.2067 0.0034 11 7 1.4929 -2.4158 0.0078 12 6 1.7268 -3.1664 -1.2331 13 6 1.8396 -3.2235 1.1849 14 1 2.8938 -3.4973 1.1399 15 6 0.9837 -4.4915 1.2034 16 6 1.5811 -2.4246 2.4363 17 1 1.1972 -1.4176 2.3643 18 6 1.8288 -2.9812 3.6730 19 7 2.2959 -4.2075 3.7606 20 14 1.5011 -1.9935 5.2244 21 1 0.0646 -1.6211 5.2799 22 1 1.8459 -2.8121 6.4144 23 1 2.3316 -0.7626 5.2121 24 1 -0.3634 0.0043 1.0277 25 1 -0.3635 0.8878 -0.5175 26 1 -0.3633 -0.8921 -0.5101 27 1 1.6494 2.1305 -0.0004 28 1 5.2431 2.4187 -0.0146 29 1 3.7848 3.2529 -0.0106 30 1 4.1182 -2.1535 -0.0013 31 1 1.1129 -4.0670 -1.2341 32 1 1.4619 -2.5452 -2.0888 33 1 2.7789 -3.4438 -1.2972 34 1 1.1673 -5.0402 2.1272 35 1 -0.0702 -4.2193 1.1459 36 1 1.2443 -5.1182 0.3506 37 1 2.4705 -4.5990 4.6307 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383348163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:53 Heat of formation + Delta-G solvation = 43.087645 kcal Electronic energy + Delta-G solvation = -19490.267963 eV Core-core repulsion = 16652.804463 eV Total energy + Delta-G solvation = -2837.463499 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.07081 -38.66538 -37.27954 -35.46417 -34.36558 -33.24784 -30.97413 -29.20036 -28.37061 -27.05829 -25.75820 -23.72135 -22.71704 -21.32302 -19.39768 -18.41275 -17.89611 -17.25458 -16.87981 -15.99850 -15.69306 -15.57537 -15.09061 -14.96828 -14.71496 -14.28835 -14.04756 -13.89472 -13.65522 -13.59089 -13.16691 -13.06815 -12.87516 -12.62569 -12.53530 -12.38993 -12.30816 -12.14396 -12.00505 -11.69438 -11.06318 -10.83872 -10.44840 -9.57037 -9.01778 -8.31990 -8.03296 -6.12473 0.01255 0.69181 1.45212 1.45996 1.52438 1.58777 1.98972 2.47126 2.87283 2.95732 3.06331 3.26525 3.43456 3.92662 4.25535 4.50971 4.60416 4.66466 4.74334 4.89693 4.91714 4.99874 5.06676 5.13791 5.16218 5.16533 5.22742 5.30351 5.47226 5.58476 5.78618 5.83753 5.91999 5.98346 6.35799 6.41148 6.45549 6.60304 6.86069 6.91931 7.07107 7.55492 9.01915 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.015750 B = 0.007996 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.299192 B = 3500.799020 C = 3828.071555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.010 3.990 3 C -0.191 4.191 4 C 0.266 3.734 5 N -0.856 5.856 6 C -0.137 4.137 7 C 0.283 3.717 8 N -0.478 5.478 9 C -0.059 4.059 10 C 0.055 3.945 11 N -0.497 5.497 12 C 0.028 3.972 13 C 0.221 3.779 14 H -0.036 1.036 15 C -0.125 4.125 16 C -0.497 4.497 17 H 0.063 0.937 18 C 0.010 3.990 19 N -0.924 5.924 20 Si 0.946 3.054 21 H -0.265 1.265 22 H -0.291 1.291 23 H -0.277 1.277 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.167 0.833 28 H 0.397 0.603 29 H 0.418 0.582 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.009 0.991 34 H 0.060 0.940 35 H 0.038 0.962 36 H 0.028 0.972 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.787 11.976 -9.339 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.008 3.992 3 C -0.214 4.214 4 C 0.156 3.844 5 N -0.395 5.395 6 C -0.147 4.147 7 C -0.029 4.029 8 N -0.156 5.156 9 C -0.082 4.082 10 C -0.041 4.041 11 N -0.218 5.218 12 C -0.119 4.119 13 C 0.115 3.885 14 H -0.018 1.018 15 C -0.183 4.183 16 C -0.536 4.536 17 H 0.081 0.919 18 C -0.187 4.187 19 N -0.564 5.564 20 Si 0.773 3.227 21 H -0.190 1.190 22 H -0.217 1.217 23 H -0.202 1.202 24 H 0.083 0.917 25 H 0.108 0.892 26 H 0.090 0.910 27 H 0.184 0.816 28 H 0.226 0.774 29 H 0.250 0.750 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.028 0.972 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.517 11.923 -9.191 15.263 hybrid contribution 1.033 -0.290 1.185 1.599 sum -1.484 11.633 -8.006 14.199 Atomic orbital electron populations 1.20705 0.89183 1.03489 1.02490 1.20054 0.97544 0.90586 0.91030 1.20577 0.90488 0.98991 1.11305 1.17547 0.91617 0.84710 0.90524 1.42386 1.09194 1.04940 1.82990 1.15372 0.83250 0.93998 1.22115 1.25869 0.92775 0.92622 0.91657 1.81183 1.12714 1.08480 1.13207 1.21307 0.95341 0.95603 0.95975 1.18376 0.88947 0.92224 1.04532 1.59898 1.55544 1.03434 1.02900 1.22450 0.98537 0.98933 0.91962 1.19129 0.91407 0.90783 0.87133 1.01810 1.21677 0.98740 0.97691 1.00188 1.21319 1.41657 1.00092 0.90486 0.91878 1.25597 0.95593 0.95803 1.01749 1.70003 1.46695 1.15118 1.24623 0.85780 0.79035 0.78616 0.79298 1.19005 1.21733 1.20217 0.91687 0.89230 0.90973 0.81599 0.77444 0.74994 0.88252 0.90934 0.90172 0.97204 0.92175 0.94248 0.95347 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.63 9.75 71.23 0.69 -1.93 16 2 C 0.01 0.31 5.59 -19.71 -0.11 0.20 16 3 C -0.19 -4.59 9.52 22.36 0.21 -4.38 16 4 C 0.27 6.89 6.76 38.59 0.26 7.15 16 5 N -0.86 -15.77 9.00 -50.78 -0.46 -16.23 16 6 C -0.14 -4.50 5.75 -21.17 -0.12 -4.62 16 7 C 0.28 9.71 14.08 88.33 1.24 10.95 16 8 N -0.48 -17.46 18.54 19.00 0.35 -17.11 16 9 C -0.06 -2.21 8.36 22.67 0.19 -2.02 16 10 C 0.06 2.01 3.44 38.09 0.13 2.15 16 11 N -0.50 -19.50 3.53 -700.17 -2.47 -21.97 16 12 C 0.03 0.94 8.94 127.69 1.14 2.08 16 13 C 0.22 10.72 1.76 44.17 0.08 10.80 16 14 H -0.04 -1.97 7.20 -2.38 -0.02 -1.98 16 15 C -0.12 -5.86 8.61 71.98 0.62 -5.24 16 16 C -0.50 -26.11 8.05 25.60 0.21 -25.90 16 17 H 0.06 3.25 7.00 -2.91 -0.02 3.23 16 18 C 0.01 0.56 5.28 84.65 0.45 1.01 16 19 N -0.92 -53.02 11.28 21.44 0.24 -52.78 16 20 Si 0.95 43.39 29.54 68.60 2.03 45.41 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 24 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.09 1.61 8.08 -2.39 -0.02 1.59 16 26 H 0.07 2.01 7.43 -2.39 -0.02 1.99 16 27 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 28 H 0.40 7.57 7.68 -92.71 -0.71 6.86 16 29 H 0.42 4.84 8.84 -92.71 -0.82 4.02 16 30 H 0.10 4.09 7.05 -2.91 -0.02 4.07 16 31 H 0.07 2.32 6.43 -2.39 -0.02 2.30 16 32 H 0.08 2.22 8.13 -2.39 -0.02 2.20 16 33 H 0.01 0.33 7.51 -2.39 -0.02 0.31 16 34 H 0.06 3.19 5.93 -2.38 -0.01 3.18 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.03 1.17 6.72 -2.39 -0.02 1.15 16 37 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -63.44 309.77 4.26 -59.18 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -0.42 Total: 13.25 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 4.99 Total: -9.75 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -2.33 Total: -108.09 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -63.44 4.26 -59.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383348163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.267 kcal (2) G-P(sol) polarization free energy of solvation -63.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds