Wall clock time and date at job start Mon Mar 30 2020 07:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99452 * 2 1 4 4 C 1.52992 * 109.47820 * 293.95562 * 3 2 1 5 5 C 1.53781 * 113.61566 * 274.13989 * 4 3 2 6 6 C 1.53949 * 87.02193 * 220.04147 * 5 4 3 7 7 F 1.39892 * 113.54060 * 270.81306 * 6 5 4 8 8 F 1.39910 * 113.74228 * 139.93927 * 6 5 4 9 9 C 1.53780 * 87.11088 * 25.36310 * 6 5 4 10 10 C 1.46898 * 111.00305 * 123.95406 * 2 1 3 11 11 C 1.53001 * 109.46866 * 71.45629 * 10 2 1 12 12 C 1.50698 * 115.55188 * 54.04797 * 11 10 2 13 13 H 1.08000 * 120.00632 * 215.59389 * 12 11 10 14 14 C 1.37882 * 119.99752 * 35.31234 * 12 11 10 15 15 N 1.31512 * 120.00108 * 355.67730 * 14 12 11 16 16 Si 1.86807 * 119.99772 * 175.67765 * 14 12 11 17 17 H 1.48498 * 109.47302 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46877 * 120.00476 * 16 14 12 19 19 H 1.48503 * 109.46894 * 240.00247 * 16 14 12 20 20 C 1.53003 * 117.49947 * 199.71574 * 11 10 2 21 21 C 1.52999 * 117.50098 * 268.37667 * 11 10 2 22 22 H 1.08996 * 109.47035 * 301.04048 * 1 2 3 23 23 H 1.09000 * 109.47483 * 61.04454 * 1 2 3 24 24 H 1.09008 * 109.46562 * 181.04116 * 1 2 3 25 25 H 1.09001 * 109.47015 * 53.95890 * 3 2 1 26 26 H 1.09003 * 109.47000 * 173.95494 * 3 2 1 27 27 H 1.09004 * 112.85039 * 45.33075 * 4 3 2 28 28 H 1.09001 * 113.61422 * 334.56251 * 5 4 3 29 29 H 1.09003 * 113.61412 * 105.46434 * 5 4 3 30 30 H 1.09003 * 113.61486 * 220.09202 * 9 6 5 31 31 H 1.09001 * 113.69661 * 89.19457 * 9 6 5 32 32 H 1.08999 * 109.47387 * 311.46208 * 10 2 1 33 33 H 1.08994 * 109.47097 * 191.45518 * 10 2 1 34 34 H 0.96997 * 120.00234 * 184.99173 * 15 14 12 35 35 H 1.09002 * 117.49992 * 215.00501 * 20 11 10 36 36 H 1.08998 * 117.49674 * 0.02562 * 20 11 10 37 37 H 1.09003 * 117.49903 * 359.97438 * 21 11 10 38 38 H 1.08999 * 117.50027 * 144.97250 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6314 2.0575 -1.3181 5 6 2.6366 1.7891 -2.4505 6 6 2.4611 3.2660 -2.8478 7 9 1.4207 3.4799 -3.7581 8 9 3.6530 3.8926 -3.2279 9 6 2.0648 3.5314 -1.3858 10 6 1.9956 -0.7660 1.1375 11 6 1.7500 -2.2581 0.9050 12 6 2.2711 -2.8072 -0.3981 13 1 1.7215 -3.5782 -0.9176 14 6 3.4467 -2.3212 -0.9300 15 7 4.0687 -1.3206 -0.3457 16 14 4.1558 -3.0840 -2.4808 17 1 3.2726 -4.1865 -2.9387 18 1 4.2493 -2.0503 -3.5428 19 1 5.5097 -3.6222 -2.1933 20 6 1.7896 -3.1793 2.1259 21 6 0.4528 -2.8547 1.4545 22 1 -0.3633 0.5299 0.8805 23 1 -0.3634 0.4975 -0.8992 24 1 -0.3633 -1.0276 0.0187 25 1 1.5610 1.9273 0.8310 26 1 3.0797 1.3445 0.1082 27 1 0.5934 1.8940 -1.6079 28 1 3.6390 1.5483 -2.0965 29 1 2.2718 1.0878 -3.2010 30 1 1.2391 4.2348 -1.2780 31 1 2.9097 3.7682 -0.7390 32 1 1.4906 -0.4528 2.0514 33 1 3.0660 -0.5845 1.2334 34 1 4.8555 -0.9312 -0.7583 35 1 2.1925 -4.1825 1.9867 36 1 1.9901 -2.7223 3.0949 37 1 -0.2256 -2.1843 1.9822 38 1 -0.0240 -3.6441 0.8734 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383547360.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:35 Heat of formation + Delta-G solvation = -42.619164 kcal Electronic energy + Delta-G solvation = -20540.418165 eV Core-core repulsion = 17248.548953 eV Total energy + Delta-G solvation = -3291.869212 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.59010 -46.93041 -38.42448 -36.97224 -34.39693 -32.00020 -27.66304 -26.61029 -25.96742 -25.34128 -23.18120 -21.14746 -20.83289 -19.47112 -18.80791 -17.14243 -16.30604 -16.01417 -15.98052 -15.15878 -14.71124 -14.12274 -13.95340 -13.80016 -13.62139 -13.29392 -13.18105 -12.79006 -12.36774 -12.26254 -11.82293 -11.49927 -11.21069 -10.97714 -10.91028 -10.86953 -10.53158 -10.41207 -10.39873 -10.26433 -10.11675 -9.88233 -9.31111 -8.79718 -8.59767 -8.06793 -7.06703 -5.81755 -3.90181 3.33354 3.42265 3.46148 3.71817 4.05518 4.44706 4.48654 4.60298 4.70655 5.03241 5.32444 5.58014 5.64839 5.66343 5.70148 5.77642 5.86392 6.09369 6.11406 6.17673 6.18706 6.27781 6.38311 6.44670 6.59048 6.65940 6.71666 6.76429 6.85087 6.96021 7.24091 7.35335 7.64663 8.06268 8.26219 8.31453 8.60538 9.04277 9.69811 11.13977 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019702 B = 0.007420 C = 0.005993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.820864 B = 3772.866280 C = 4670.807734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.492 5.492 3 C 0.078 3.922 4 C -0.094 4.094 5 C -0.138 4.138 6 C 0.242 3.758 7 F -0.186 7.186 8 F -0.198 7.198 9 C -0.160 4.160 10 C 0.109 3.891 11 C 0.066 3.934 12 C -0.469 4.469 13 H 0.053 0.947 14 C 0.088 3.912 15 N -0.872 5.872 16 Si 0.886 3.114 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.288 1.288 20 C -0.211 4.211 21 C -0.218 4.218 22 H 0.001 0.999 23 H 0.050 0.950 24 H 0.073 0.927 25 H 0.016 0.984 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.109 0.891 32 H -0.021 1.021 33 H 0.119 0.881 34 H 0.254 0.746 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 8.624 -0.442 9.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.214 5.214 3 C -0.051 4.051 4 C -0.113 4.113 5 C -0.176 4.176 6 C 0.206 3.794 7 F -0.167 7.167 8 F -0.179 7.179 9 C -0.199 4.199 10 C -0.018 4.018 11 C 0.065 3.935 12 C -0.506 4.506 13 H 0.071 0.929 14 C -0.115 4.115 15 N -0.510 5.510 16 Si 0.714 3.286 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.214 1.214 20 C -0.250 4.250 21 C -0.256 4.256 22 H 0.019 0.981 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.034 0.966 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.133 0.867 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.128 0.872 32 H -0.003 1.003 33 H 0.136 0.864 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.927 8.488 -0.908 9.024 hybrid contribution -0.049 0.094 -0.292 0.310 sum -2.976 8.582 -1.200 9.162 Atomic orbital electron populations 1.22466 0.90134 1.01930 0.97877 1.61534 1.04694 1.09956 1.45173 1.21910 1.01002 0.89449 0.92730 1.22381 0.99698 0.92228 0.96975 1.24027 1.03120 0.91371 0.99100 1.22503 0.73435 0.96418 0.87031 1.92974 1.57898 1.95935 1.69929 1.92978 1.46974 1.84782 1.93142 1.24123 1.03441 0.99534 0.92806 1.21800 1.02142 0.92029 0.85803 1.19008 0.92059 0.90145 0.92300 1.20323 1.05575 1.20204 1.04489 0.92916 1.24715 0.96190 0.94439 0.96119 1.69791 1.19742 1.23526 1.37927 0.86656 0.78814 0.79369 0.83730 1.20154 1.21042 1.21408 1.23003 1.01512 1.02246 0.98219 1.22933 0.91457 1.04594 1.06583 0.98069 0.93146 0.90823 0.96649 0.89823 0.88386 0.86729 0.89165 0.89617 0.87237 1.00285 0.86383 0.93581 0.90554 0.92031 0.91940 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.12 60.07 0.55 1.00 16 2 N -0.49 -9.94 4.06 -242.92 -0.99 -10.93 16 3 C 0.08 1.33 4.78 -3.83 -0.02 1.31 16 4 C -0.09 -1.41 3.66 -89.81 -0.33 -1.74 16 5 C -0.14 -2.20 7.44 -25.83 -0.19 -2.39 16 6 C 0.24 3.57 3.28 -25.83 -0.08 3.48 16 7 F -0.19 -2.90 17.38 2.25 0.04 -2.86 16 8 F -0.20 -3.09 17.42 2.25 0.04 -3.05 16 9 C -0.16 -2.03 7.43 -25.92 -0.19 -2.22 16 10 C 0.11 2.43 3.90 -3.82 -0.01 2.42 16 11 C 0.07 1.56 1.65 -155.66 -0.26 1.30 16 12 C -0.47 -12.27 8.74 -34.44 -0.30 -12.57 16 13 H 0.05 1.43 7.82 -52.49 -0.41 1.02 16 14 C 0.09 2.26 5.31 -17.82 -0.09 2.16 16 15 N -0.87 -22.06 10.10 55.43 0.56 -21.50 16 16 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 C -0.21 -4.69 9.96 -26.69 -0.27 -4.95 16 21 C -0.22 -4.66 8.36 -26.69 -0.22 -4.89 16 22 H 0.00 0.02 8.14 -51.93 -0.42 -0.41 16 23 H 0.05 0.83 6.34 -51.93 -0.33 0.50 16 24 H 0.07 1.44 6.02 -51.92 -0.31 1.13 16 25 H 0.02 0.25 8.12 -51.93 -0.42 -0.17 16 26 H 0.08 1.54 7.60 -51.93 -0.39 1.14 16 27 H 0.10 1.47 6.31 -51.93 -0.33 1.14 16 28 H 0.11 1.91 7.92 -51.93 -0.41 1.50 16 29 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.11 1.27 8.10 -51.93 -0.42 0.85 16 32 H -0.02 -0.45 8.00 -51.93 -0.42 -0.87 16 33 H 0.12 2.87 5.62 -51.93 -0.29 2.58 16 34 H 0.25 6.22 8.32 -40.82 -0.34 5.88 16 35 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.24 8.06 -51.93 -0.42 0.82 16 38 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 LS Contribution 310.53 15.07 4.68 4.68 Total: -1.00 -25.87 310.53 -7.94 -33.82 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.83 Total: 1.33 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -1.43 Total: -17.09 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: -0.43 Total: -32.43 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 0.08 Total: -5.91 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -25.87 -7.94 -33.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383547360.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.804 kcal (2) G-P(sol) polarization free energy of solvation -25.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds