Wall clock time and date at job start Mon Mar 30 2020 07:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99452 * 2 1 4 4 C 1.52992 * 109.47820 * 293.95562 * 3 2 1 5 5 C 1.53781 * 113.61566 * 274.13989 * 4 3 2 6 6 C 1.53949 * 87.02193 * 220.04147 * 5 4 3 7 7 F 1.39892 * 113.54060 * 270.81306 * 6 5 4 8 8 F 1.39910 * 113.74228 * 139.93927 * 6 5 4 9 9 C 1.53780 * 87.11088 * 25.36310 * 6 5 4 10 10 C 1.46898 * 111.00305 * 123.95406 * 2 1 3 11 11 C 1.53001 * 109.46866 * 71.45629 * 10 2 1 12 12 C 1.50698 * 115.55188 * 54.04797 * 11 10 2 13 13 H 1.08000 * 120.00632 * 215.59389 * 12 11 10 14 14 C 1.37882 * 119.99752 * 35.31234 * 12 11 10 15 15 N 1.31512 * 120.00108 * 355.67730 * 14 12 11 16 16 Si 1.86807 * 119.99772 * 175.67765 * 14 12 11 17 17 H 1.48498 * 109.47302 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46877 * 120.00476 * 16 14 12 19 19 H 1.48503 * 109.46894 * 240.00247 * 16 14 12 20 20 C 1.53003 * 117.49947 * 199.71574 * 11 10 2 21 21 C 1.52999 * 117.50098 * 268.37667 * 11 10 2 22 22 H 1.08996 * 109.47035 * 301.04048 * 1 2 3 23 23 H 1.09000 * 109.47483 * 61.04454 * 1 2 3 24 24 H 1.09008 * 109.46562 * 181.04116 * 1 2 3 25 25 H 1.09001 * 109.47015 * 53.95890 * 3 2 1 26 26 H 1.09003 * 109.47000 * 173.95494 * 3 2 1 27 27 H 1.09004 * 112.85039 * 45.33075 * 4 3 2 28 28 H 1.09001 * 113.61422 * 334.56251 * 5 4 3 29 29 H 1.09003 * 113.61412 * 105.46434 * 5 4 3 30 30 H 1.09003 * 113.61486 * 220.09202 * 9 6 5 31 31 H 1.09001 * 113.69661 * 89.19457 * 9 6 5 32 32 H 1.08999 * 109.47387 * 311.46208 * 10 2 1 33 33 H 1.08994 * 109.47097 * 191.45518 * 10 2 1 34 34 H 0.96997 * 120.00234 * 184.99173 * 15 14 12 35 35 H 1.09002 * 117.49992 * 215.00501 * 20 11 10 36 36 H 1.08998 * 117.49674 * 0.02562 * 20 11 10 37 37 H 1.09003 * 117.49903 * 359.97438 * 21 11 10 38 38 H 1.08999 * 117.50027 * 144.97250 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6314 2.0575 -1.3181 5 6 2.6366 1.7891 -2.4505 6 6 2.4611 3.2660 -2.8478 7 9 1.4207 3.4799 -3.7581 8 9 3.6530 3.8926 -3.2279 9 6 2.0648 3.5314 -1.3858 10 6 1.9956 -0.7660 1.1375 11 6 1.7500 -2.2581 0.9050 12 6 2.2711 -2.8072 -0.3981 13 1 1.7215 -3.5782 -0.9176 14 6 3.4467 -2.3212 -0.9300 15 7 4.0687 -1.3206 -0.3457 16 14 4.1558 -3.0840 -2.4808 17 1 3.2726 -4.1865 -2.9387 18 1 4.2493 -2.0503 -3.5428 19 1 5.5097 -3.6222 -2.1933 20 6 1.7896 -3.1793 2.1259 21 6 0.4528 -2.8547 1.4545 22 1 -0.3633 0.5299 0.8805 23 1 -0.3634 0.4975 -0.8992 24 1 -0.3633 -1.0276 0.0187 25 1 1.5610 1.9273 0.8310 26 1 3.0797 1.3445 0.1082 27 1 0.5934 1.8940 -1.6079 28 1 3.6390 1.5483 -2.0965 29 1 2.2718 1.0878 -3.2010 30 1 1.2391 4.2348 -1.2780 31 1 2.9097 3.7682 -0.7390 32 1 1.4906 -0.4528 2.0514 33 1 3.0660 -0.5845 1.2334 34 1 4.8555 -0.9312 -0.7583 35 1 2.1925 -4.1825 1.9867 36 1 1.9901 -2.7223 3.0949 37 1 -0.2256 -2.1843 1.9822 38 1 -0.0240 -3.6441 0.8734 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383547360.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:35 Heat of formation + Delta-G solvation = -54.664375 kcal Electronic energy + Delta-G solvation = -20540.940485 eV Core-core repulsion = 17248.548953 eV Total energy + Delta-G solvation = -3292.391532 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.79030 -48.13752 -39.79126 -38.54242 -35.93639 -33.95546 -29.05709 -28.18236 -27.28938 -27.09609 -24.59114 -22.88422 -22.22987 -20.74070 -20.59108 -18.39112 -17.90236 -17.42274 -17.19887 -16.60098 -16.48941 -15.72833 -15.56589 -15.07442 -15.00568 -14.77357 -14.43445 -14.36719 -13.76952 -13.46643 -13.29191 -13.15619 -12.92834 -12.80379 -12.44253 -12.32707 -12.21215 -12.04304 -11.90867 -11.69671 -11.55772 -11.29526 -11.08043 -10.68361 -10.39548 -9.93204 -8.57628 -7.75912 -5.90083 1.44868 1.50695 1.56930 2.54837 2.56391 2.87602 3.11767 3.32151 3.43467 3.49968 3.75786 3.89788 4.35982 4.40646 4.51044 4.57122 4.61577 4.62319 4.67660 4.75374 4.79861 4.84338 4.89335 4.94117 4.98990 5.06499 5.10146 5.20763 5.30628 5.45223 5.52242 5.60426 5.77437 6.17313 6.53425 6.74336 6.84855 7.08873 7.70121 9.16024 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019702 B = 0.007420 C = 0.005993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.820864 B = 3772.866280 C = 4670.807734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.513 5.513 3 C 0.082 3.918 4 C -0.090 4.090 5 C -0.146 4.146 6 C 0.242 3.758 7 F -0.191 7.191 8 F -0.203 7.203 9 C -0.139 4.139 10 C 0.122 3.878 11 C 0.039 3.961 12 C -0.489 4.489 13 H 0.033 0.967 14 C 0.060 3.940 15 N -0.874 5.874 16 Si 0.928 3.072 17 H -0.283 1.283 18 H -0.283 1.283 19 H -0.288 1.288 20 C -0.212 4.212 21 C -0.198 4.198 22 H 0.016 0.984 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.032 0.968 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.123 0.877 32 H -0.015 1.015 33 H 0.095 0.905 34 H 0.254 0.746 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 9.949 -0.076 10.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.236 5.236 3 C -0.046 4.046 4 C -0.109 4.109 5 C -0.185 4.185 6 C 0.206 3.794 7 F -0.172 7.172 8 F -0.184 7.184 9 C -0.177 4.177 10 C -0.006 4.006 11 C 0.038 3.962 12 C -0.527 4.527 13 H 0.051 0.949 14 C -0.142 4.142 15 N -0.511 5.511 16 Si 0.757 3.243 17 H -0.208 1.208 18 H -0.209 1.209 19 H -0.214 1.214 20 C -0.251 4.251 21 C -0.235 4.235 22 H 0.034 0.966 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.092 0.908 30 H 0.129 0.871 31 H 0.141 0.859 32 H 0.003 0.997 33 H 0.113 0.887 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.644 9.820 -0.540 10.488 hybrid contribution 0.181 -0.362 -0.422 0.584 sum -3.463 9.457 -0.962 10.117 Atomic orbital electron populations 1.22413 0.88907 1.01286 0.99343 1.61447 1.05963 1.11622 1.44546 1.21859 0.99976 0.88307 0.94427 1.22315 0.99440 0.93834 0.95268 1.24018 1.02810 0.92224 0.99404 1.22550 0.73189 0.95500 0.88127 1.92967 1.57992 1.95872 1.70327 1.92967 1.47430 1.84736 1.93308 1.24052 1.04640 0.98179 0.90855 1.21502 1.00804 0.91461 0.86803 1.19119 0.93976 0.91260 0.91808 1.20410 1.06057 1.20336 1.05849 0.94866 1.25114 0.96399 0.94884 0.97820 1.69893 1.19595 1.23474 1.38186 0.85998 0.77968 0.78545 0.81796 1.20802 1.20880 1.21414 1.23009 1.02126 1.01582 0.98363 1.22879 0.90977 1.04109 1.05562 0.96582 0.91554 0.92546 0.95002 0.91478 0.88020 0.87926 0.90762 0.87074 0.85873 0.99723 0.88748 0.93590 0.91413 0.90630 0.90058 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 9.12 127.69 1.17 2.16 16 2 N -0.51 -20.18 4.06 -922.47 -3.74 -23.92 16 3 C 0.08 2.69 4.78 86.30 0.41 3.10 16 4 C -0.09 -2.51 3.66 -10.27 -0.04 -2.55 16 5 C -0.15 -4.56 7.44 31.18 0.23 -4.33 16 6 C 0.24 6.70 3.28 31.18 0.10 6.80 16 7 F -0.19 -5.57 17.38 44.97 0.78 -4.79 16 8 F -0.20 -6.06 17.42 44.97 0.78 -5.27 16 9 C -0.14 -3.09 7.43 31.12 0.23 -2.86 16 10 C 0.12 5.33 3.90 86.30 0.34 5.67 16 11 C 0.04 1.84 1.65 -52.93 -0.09 1.75 16 12 C -0.49 -25.81 8.74 25.60 0.22 -25.58 16 13 H 0.03 1.83 7.82 -2.91 -0.02 1.81 16 14 C 0.06 3.08 5.31 84.66 0.45 3.53 16 15 N -0.87 -44.31 10.10 21.45 0.22 -44.09 16 16 Si 0.93 42.57 29.54 68.60 2.03 44.60 16 17 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 20 C -0.21 -9.25 9.96 30.62 0.30 -8.94 16 21 C -0.20 -8.22 8.36 30.62 0.26 -7.96 16 22 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 23 H 0.07 2.04 6.34 -2.39 -0.02 2.03 16 24 H 0.06 2.13 6.02 -2.38 -0.01 2.11 16 25 H 0.03 0.94 8.12 -2.39 -0.02 0.92 16 26 H 0.07 2.41 7.60 -2.39 -0.02 2.39 16 27 H 0.10 2.79 6.31 -2.38 -0.02 2.78 16 28 H 0.10 3.43 7.92 -2.39 -0.02 3.42 16 29 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.12 2.45 8.10 -2.39 -0.02 2.43 16 32 H -0.02 -0.63 8.00 -2.39 -0.02 -0.65 16 33 H 0.09 4.58 5.62 -2.39 -0.01 4.57 16 34 H 0.25 12.47 8.32 -92.71 -0.77 11.70 16 35 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.08 3.05 8.06 -2.39 -0.02 3.03 16 38 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -53.98 310.53 4.69 -49.29 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 1.04 Total: 13.39 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 3.59 Total: -29.20 kcal Atomic # 7 Polarization: -64.49 SS G_CDS: -3.53 Total: -68.02 kcal Atomic # 9 Polarization: -11.63 SS G_CDS: 1.56 Total: -10.06 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -53.98 4.69 -49.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383547360.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.373 kcal (2) G-P(sol) polarization free energy of solvation -53.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds