Wall clock time and date at job start Mon Mar 30 2020 07:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.47404 * 2 1 4 4 C 1.46893 * 110.99993 * 193.95314 * 3 2 1 5 5 C 1.50710 * 109.47031 * 66.05021 * 4 3 2 6 6 H 1.07997 * 119.99936 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99966 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00329 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00024 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47060 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46942 * 119.99995 * 9 7 5 12 12 H 1.48501 * 109.47448 * 240.00126 * 9 7 5 13 13 C 1.40008 * 111.00018 * 70.00057 * 3 2 1 14 14 C 1.38434 * 119.90337 * 64.20578 * 13 3 2 15 15 C 1.39703 * 119.84188 * 180.29248 * 14 13 3 16 16 C 1.43197 * 120.17040 * 179.74708 * 15 14 13 17 17 N 6.13203 * 106.10255 * 77.38100 * 2 1 3 18 18 C 1.40336 * 119.65725 * 359.73251 * 15 14 13 19 19 N 1.39319 * 120.09892 * 179.97438 * 18 15 14 20 20 C 1.38796 * 119.80588 * 359.97438 * 18 15 14 21 21 C 1.38037 * 120.14916 * 359.97438 * 20 18 15 22 22 C 1.50706 * 119.81972 * 180.02562 * 21 20 18 23 23 H 1.09001 * 109.47310 * 59.99353 * 1 2 3 24 24 H 1.08995 * 109.47710 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46811 * 300.00403 * 1 2 3 26 26 H 1.09000 * 109.46413 * 240.00195 * 2 1 3 27 27 H 1.09001 * 109.47064 * 120.00156 * 2 1 3 28 28 H 1.09002 * 109.47619 * 186.04620 * 4 3 2 29 29 H 1.08994 * 109.47729 * 306.04823 * 4 3 2 30 30 H 0.96999 * 120.00651 * 180.02562 * 8 7 5 31 31 H 1.07998 * 120.08192 * 0.02562 * 14 13 3 32 32 H 0.97000 * 120.00228 * 180.02562 * 19 18 15 33 33 H 0.97006 * 119.99586 * 0.02562 * 19 18 15 34 34 H 1.07991 * 119.92453 * 180.02562 * 20 18 15 35 35 H 1.08999 * 109.47015 * 90.00467 * 22 21 20 36 36 H 1.09000 * 109.46646 * 209.99619 * 22 21 20 37 37 H 1.09000 * 109.47248 * 330.00337 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4500 1.4375 -0.3307 5 6 3.6535 0.9854 -1.7539 6 1 2.8052 0.6882 -2.3526 7 6 4.9226 0.9510 -2.2915 8 7 5.9558 1.3124 -1.5623 9 14 5.1750 0.3899 -4.0552 10 1 3.8628 0.0392 -4.6556 11 1 5.8003 1.4857 -4.8386 12 1 6.0624 -0.8007 -4.0738 13 6 1.7655 2.0070 1.2283 14 6 2.3746 1.5369 2.3791 15 6 2.1153 2.1547 3.6050 16 6 2.7373 1.6708 4.8006 17 7 3.2308 1.2871 5.7491 18 6 1.2424 3.2522 3.6585 19 7 0.9768 3.8750 4.8761 20 6 0.6443 3.7155 2.4948 21 6 0.9070 3.0996 1.2877 22 6 0.2540 3.6091 0.0286 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8114 2.4598 -0.2191 29 1 4.0028 0.7814 0.3416 30 1 6.8486 1.2886 -1.9406 31 1 3.0453 0.6918 2.3301 32 1 0.3729 4.6333 4.9116 33 1 1.3959 3.5503 5.6885 34 1 -0.0274 4.5602 2.5337 35 1 0.8884 4.3691 -0.4277 36 1 0.1171 2.7832 -0.6694 37 1 -0.7155 4.0436 0.2723 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383869120.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:19 Heat of formation + Delta-G solvation = 33.966584 kcal Electronic energy + Delta-G solvation = -19058.991611 eV Core-core repulsion = 16221.132593 eV Total energy + Delta-G solvation = -2837.859018 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.15544 -38.64432 -37.28735 -35.32158 -34.46173 -33.36448 -31.57910 -29.71123 -28.56934 -27.14800 -24.36121 -24.07542 -22.94214 -21.70197 -19.33896 -18.54720 -17.95271 -17.24350 -16.81751 -16.19911 -15.88521 -15.66049 -15.11901 -15.04601 -14.57417 -14.29720 -14.19828 -14.07956 -13.93528 -13.85258 -13.22626 -13.11549 -12.86304 -12.70508 -12.49292 -12.43715 -12.30266 -12.16512 -11.96951 -11.67982 -11.27865 -11.07630 -10.58569 -9.65468 -9.07183 -8.42667 -8.14720 -6.25364 -0.06943 0.57053 1.44401 1.45305 1.55379 1.58549 1.93394 2.44127 2.82448 2.91036 2.96261 3.17430 3.33921 3.85178 4.17168 4.32482 4.48519 4.51775 4.65670 4.78237 4.83425 4.94655 5.05831 5.09035 5.10857 5.20069 5.22100 5.25328 5.39151 5.46304 5.52487 5.71655 5.84430 5.89348 6.15235 6.33195 6.37327 6.41903 6.87432 6.91482 6.95766 7.44336 8.95361 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.021798 B = 0.005782 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.222792 B = 4841.347743 C = 5319.545766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 N -0.489 5.489 4 C 0.216 3.784 5 C -0.515 4.515 6 H 0.069 0.931 7 C 0.001 3.999 8 N -0.937 5.937 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.281 1.281 12 H -0.284 1.284 13 C 0.026 3.974 14 C -0.064 4.064 15 C -0.134 4.134 16 C 0.281 3.719 17 N -0.474 5.474 18 C 0.273 3.727 19 N -0.854 5.854 20 C -0.186 4.186 21 C 0.015 3.985 22 C -0.108 4.108 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.014 0.986 28 H 0.001 0.999 29 H -0.039 1.039 30 H 0.262 0.738 31 H 0.100 0.900 32 H 0.419 0.581 33 H 0.399 0.601 34 H 0.171 0.829 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.564 5.966 6.939 18.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.070 4.070 3 N -0.210 5.210 4 C 0.091 3.909 5 C -0.553 4.553 6 H 0.087 0.913 7 C -0.197 4.197 8 N -0.578 5.578 9 Si 0.792 3.208 10 H -0.182 1.182 11 H -0.206 1.206 12 H -0.210 1.210 13 C -0.070 4.070 14 C -0.087 4.087 15 C -0.144 4.144 16 C -0.031 4.031 17 N -0.152 5.152 18 C 0.162 3.838 19 N -0.392 5.392 20 C -0.209 4.209 21 C 0.013 3.987 22 C -0.164 4.164 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.033 0.967 28 H 0.019 0.981 29 H -0.021 1.021 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.252 0.748 33 H 0.227 0.773 34 H 0.189 0.811 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.891 5.638 8.003 17.821 hybrid contribution 1.479 -0.769 -0.129 1.672 sum -13.412 4.869 7.874 16.297 Atomic orbital electron populations 1.21662 0.93019 1.01823 1.02201 1.22106 0.96983 0.88197 0.99744 1.59851 1.18246 1.16810 1.26134 1.19370 0.82370 0.94267 0.94898 1.21503 0.92869 1.43075 0.97900 0.91256 1.25894 0.95722 0.95673 1.02413 1.70111 0.99388 1.49754 1.38569 0.85362 0.78495 0.77634 0.79295 1.18222 1.20650 1.20981 1.18739 1.01043 0.98922 0.88313 1.21417 0.97156 0.98199 0.91937 1.15346 1.08413 1.03514 0.87164 1.25834 0.92237 0.92493 0.92562 1.81208 1.11375 1.10227 1.12385 1.17565 0.89873 0.88338 0.88037 1.42429 1.53671 1.37527 1.05582 1.20613 1.06644 1.04749 0.88860 1.20063 0.91695 0.90657 0.96300 1.20779 1.00136 1.01635 0.93890 0.91818 0.91388 0.92675 0.91608 0.96747 0.98077 1.02136 0.92911 0.88140 0.74822 0.77311 0.81124 0.91335 0.91080 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 9.80 71.98 0.71 -2.92 16 2 C 0.06 2.10 5.44 86.30 0.47 2.57 16 3 N -0.49 -19.98 3.37 -699.56 -2.36 -22.34 16 4 C 0.22 11.29 4.30 85.56 0.37 11.65 16 5 C -0.52 -28.34 8.31 25.60 0.21 -28.13 16 6 H 0.07 3.69 7.23 -2.91 -0.02 3.67 16 7 C 0.00 0.03 5.46 84.65 0.46 0.50 16 8 N -0.94 -56.57 13.29 21.45 0.28 -56.29 16 9 Si 0.97 43.74 29.54 68.60 2.03 45.77 16 10 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 C 0.03 0.91 3.73 38.08 0.14 1.05 16 14 C -0.06 -2.26 8.23 22.67 0.19 -2.07 16 15 C -0.13 -4.00 5.75 -21.17 -0.12 -4.12 16 16 C 0.28 8.91 14.08 88.33 1.24 10.16 16 17 N -0.47 -16.28 18.54 19.00 0.35 -15.93 16 18 C 0.27 6.15 6.76 38.60 0.26 6.41 16 19 N -0.85 -13.06 9.00 -50.78 -0.46 -13.52 16 20 C -0.19 -3.84 9.51 22.36 0.21 -3.62 16 21 C 0.02 0.42 5.90 -19.71 -0.12 0.31 16 22 C -0.11 -2.57 9.76 71.24 0.70 -1.87 16 23 H 0.06 1.73 7.88 -2.39 -0.02 1.71 16 24 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.05 1.46 7.52 -2.38 -0.02 1.44 16 26 H 0.07 2.71 6.60 -2.39 -0.02 2.69 16 27 H 0.01 0.54 7.08 -2.39 -0.02 0.53 16 28 H 0.00 0.06 8.06 -2.39 -0.02 0.04 16 29 H -0.04 -2.25 7.45 -2.39 -0.02 -2.27 16 30 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 31 H 0.10 4.00 7.12 -2.91 -0.02 3.98 16 32 H 0.42 3.57 8.84 -92.71 -0.82 2.76 16 33 H 0.40 6.43 7.68 -92.70 -0.71 5.71 16 34 H 0.17 2.11 8.06 -2.92 -0.02 2.09 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 1.96 7.02 -2.39 -0.02 1.94 16 37 H 0.09 1.49 8.08 -2.39 -0.02 1.47 16 Total: -1.00 -67.37 315.30 4.14 -63.23 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -0.43 Total: 9.17 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 4.72 Total: -10.10 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -2.18 Total: -108.07 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -67.37 4.14 -63.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383869120.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.192 kcal (2) G-P(sol) polarization free energy of solvation -67.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds