Wall clock time and date at job start Mon Mar 30 2020 07:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99573 * 2 1 4 4 H 1.48507 * 109.46837 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47285 * 299.99884 * 3 2 1 6 6 H 1.48500 * 109.47109 * 60.00065 * 3 2 1 7 7 C 1.37869 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00048 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00191 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47481 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47521 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47111 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.47152 * 179.97438 * 12 11 10 14 14 C 1.46429 * 110.99863 * 48.68313 * 13 12 11 15 15 C 1.53368 * 108.67774 * 178.97486 * 14 13 12 16 16 C 1.53043 * 107.95057 * 291.85449 * 15 14 13 17 17 C 1.50805 * 109.66162 * 47.35392 * 16 15 14 18 18 C 1.38617 * 118.12644 * 164.37414 * 17 16 15 19 19 C 1.38050 * 120.48231 * 179.38502 * 18 17 16 20 20 C 1.38314 * 119.89017 * 0.22116 * 19 18 17 21 21 C 1.37810 * 119.95326 * 359.64232 * 20 19 18 22 22 C 1.38368 * 122.00403 * 344.01601 * 17 16 15 23 23 H 0.96997 * 120.00298 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47302 * 60.00031 * 9 7 2 25 25 H 1.09004 * 109.47309 * 299.99848 * 9 7 2 26 26 H 1.09002 * 109.47254 * 59.99848 * 10 9 7 27 27 H 1.08996 * 109.46923 * 299.99980 * 10 9 7 28 28 H 1.09001 * 109.46569 * 59.99988 * 11 10 9 29 29 H 1.09000 * 109.46621 * 300.00255 * 11 10 9 30 30 H 1.09001 * 109.47326 * 60.00558 * 12 11 10 31 31 H 1.08992 * 109.47452 * 300.00334 * 12 11 10 32 32 H 1.08994 * 109.60625 * 298.73947 * 14 13 12 33 33 H 1.09002 * 109.59863 * 59.06124 * 14 13 12 34 34 H 1.09009 * 109.76324 * 51.46260 * 15 14 13 35 35 H 1.08997 * 109.76829 * 172.18256 * 15 14 13 36 36 H 1.09003 * 109.43786 * 287.29393 * 16 15 14 37 37 H 1.09001 * 109.44092 * 167.41231 * 16 15 14 38 38 H 1.07997 * 119.75587 * 359.36184 * 18 17 16 39 39 H 1.08002 * 120.05217 * 179.97438 * 19 18 17 40 40 H 1.08002 * 120.02647 * 179.90083 * 20 19 18 41 41 H 1.07996 * 119.79013 * 180.27502 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 -0.0001 12 6 2.4748 -6.1499 -0.0008 13 7 1.7404 -7.4222 -0.0008 14 6 0.6960 -7.4252 -1.0271 15 6 -0.0176 -8.7824 -0.9977 16 6 0.9706 -9.8455 -1.4831 17 6 2.2928 -9.6679 -0.7800 18 6 3.2040 -10.7114 -0.8285 19 6 4.4340 -10.5962 -0.2125 20 6 4.7607 -9.4340 0.4625 21 6 3.8610 -8.3913 0.5125 22 6 2.6140 -8.5034 -0.1053 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8721 -3.6042 0.8905 27 1 2.8720 -3.6042 -0.8894 28 1 0.8542 -5.0445 -0.8904 29 1 0.8535 -5.0450 0.8896 30 1 3.1014 -6.0926 0.8893 31 1 3.1014 -6.0917 -0.8906 32 1 -0.0210 -6.6304 -0.8216 33 1 1.1461 -7.2672 -2.0072 34 1 -0.3339 -9.0106 0.0202 35 1 -0.8858 -8.7568 -1.6563 36 1 1.1148 -9.7425 -2.5587 37 1 0.5736 -10.8367 -1.2643 38 1 2.9495 -11.6213 -1.3516 39 1 5.1385 -11.4137 -0.2543 40 1 5.7218 -9.3421 0.9466 41 1 4.1206 -7.4833 1.0366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385215096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:45 Heat of formation + Delta-G solvation = 5.221464 kcal Electronic energy + Delta-G solvation = -18760.300392 eV Core-core repulsion = 16024.735235 eV Total energy + Delta-G solvation = -2735.565157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.61896 -37.21001 -35.15738 -33.90737 -32.18519 -30.37380 -29.88320 -28.28157 -25.61534 -24.23646 -23.34796 -22.40857 -20.69771 -20.01632 -19.50658 -17.04876 -16.27388 -16.04330 -15.85702 -15.11986 -14.68254 -14.39857 -14.21945 -13.67407 -13.61995 -13.41346 -13.03020 -12.58590 -12.47274 -12.19793 -11.75191 -11.55743 -11.50459 -11.29672 -11.05071 -10.89758 -10.63097 -10.61868 -10.47752 -10.24997 -9.77201 -9.64966 -9.29419 -9.02595 -8.77396 -8.34273 -7.63008 -5.99136 -4.01366 1.34529 1.41046 3.31290 3.38707 3.42930 3.57624 3.90742 4.46662 4.55308 4.70924 4.81252 4.91365 5.01837 5.21154 5.26529 5.31146 5.36364 5.38204 5.42075 5.50204 5.57658 5.73913 5.77690 5.80558 5.83147 6.00136 6.02576 6.12618 6.17290 6.25086 6.42765 6.44121 6.53775 6.74916 6.79292 6.89881 7.07419 7.17366 7.36934 7.69167 7.83856 8.01438 8.44333 9.06223 9.62780 11.12252 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035233 B = 0.003508 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.528622 B = 7980.386008 C = 8636.098800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.122 4.122 12 C 0.057 3.943 13 N -0.493 5.493 14 C 0.052 3.948 15 C -0.123 4.123 16 C -0.076 4.076 17 C -0.132 4.132 18 C -0.094 4.094 19 C -0.159 4.159 20 C -0.096 4.096 21 C -0.164 4.164 22 C 0.137 3.863 23 H 0.259 0.741 24 H 0.014 0.986 25 H 0.016 0.984 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.307 -21.782 -2.176 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.160 4.160 12 C -0.067 4.067 13 N -0.205 5.205 14 C -0.074 4.074 15 C -0.161 4.161 16 C -0.114 4.114 17 C -0.135 4.135 18 C -0.112 4.112 19 C -0.178 4.178 20 C -0.114 4.114 21 C -0.184 4.184 22 C 0.037 3.963 23 H 0.069 0.931 24 H 0.033 0.967 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.853 -21.606 -1.747 22.017 hybrid contribution 0.807 0.997 -0.535 1.390 sum 4.661 -20.609 -2.282 21.252 Atomic orbital electron populations 1.69974 1.06049 1.26443 1.51083 1.25032 0.94848 0.99260 0.95395 0.86555 0.80136 0.83860 0.77570 1.19744 1.21031 1.21012 1.21314 0.93072 0.91162 1.50263 0.92686 1.19090 0.93991 0.91323 0.97169 1.21597 0.99140 0.93663 1.00284 1.21844 0.97974 0.93855 1.02301 1.22455 0.96355 0.86395 1.01532 1.58143 1.13514 1.02564 1.46320 1.22250 0.93911 0.98855 0.92422 1.21729 0.97795 0.93979 1.02573 1.20504 0.91989 0.99619 0.99243 1.19510 0.97519 0.94526 1.01953 1.20899 0.93562 0.97725 0.99064 1.20917 0.97238 0.98332 1.01308 1.20922 0.98957 0.93196 0.98343 1.21212 0.93264 1.00478 1.03491 1.18712 0.90769 0.91833 0.94978 0.93088 0.96721 0.96579 0.93279 0.93505 0.92078 0.91429 0.90015 0.93763 0.88698 0.93582 0.90644 0.90527 0.91034 0.90809 0.86437 0.86510 0.86230 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.87 9.11 -34.45 -0.31 -15.18 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 11 C -0.12 -2.05 4.58 -26.73 -0.12 -2.17 16 12 C 0.06 0.83 4.33 -3.83 -0.02 0.82 16 13 N -0.49 -6.86 4.65 -171.30 -0.80 -7.66 16 14 C 0.05 0.64 4.72 -3.89 -0.02 0.62 16 15 C -0.12 -1.27 6.19 -26.52 -0.16 -1.43 16 16 C -0.08 -0.76 5.81 -27.81 -0.16 -0.92 16 17 C -0.13 -1.59 5.74 -104.38 -0.60 -2.19 16 18 C -0.09 -1.00 9.63 -39.51 -0.38 -1.38 16 19 C -0.16 -1.66 10.05 -39.62 -0.40 -2.05 16 20 C -0.10 -1.06 10.04 -39.71 -0.40 -1.46 16 21 C -0.16 -2.09 9.03 -39.22 -0.35 -2.44 16 22 C 0.14 1.85 5.81 -83.86 -0.49 1.36 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.01 6.35 -51.93 -0.33 0.68 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 1.15 6.35 -51.93 -0.33 0.82 16 31 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 32 H 0.09 1.20 6.28 -51.93 -0.33 0.88 16 33 H 0.05 0.58 8.11 -51.93 -0.42 0.16 16 34 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 41 H 0.13 1.56 5.98 -52.49 -0.31 1.24 16 LS Contribution 324.10 15.07 4.88 4.88 Total: -1.00 -30.79 324.10 -10.74 -41.54 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.76 Total: -2.28 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -3.79 Total: -26.85 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: -0.06 Total: -34.07 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.79 -10.74 -41.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385215096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.757 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds