Wall clock time and date at job start Mon Mar 30 2020 07:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99573 * 2 1 4 4 H 1.48507 * 109.46837 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47285 * 299.99884 * 3 2 1 6 6 H 1.48500 * 109.47109 * 60.00065 * 3 2 1 7 7 C 1.37869 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00048 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00191 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47481 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47521 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47111 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.47152 * 179.97438 * 12 11 10 14 14 C 1.46429 * 110.99863 * 48.68313 * 13 12 11 15 15 C 1.53368 * 108.67774 * 178.97486 * 14 13 12 16 16 C 1.53043 * 107.95057 * 291.85449 * 15 14 13 17 17 C 1.50805 * 109.66162 * 47.35392 * 16 15 14 18 18 C 1.38617 * 118.12644 * 164.37414 * 17 16 15 19 19 C 1.38050 * 120.48231 * 179.38502 * 18 17 16 20 20 C 1.38314 * 119.89017 * 0.22116 * 19 18 17 21 21 C 1.37810 * 119.95326 * 359.64232 * 20 19 18 22 22 C 1.38368 * 122.00403 * 344.01601 * 17 16 15 23 23 H 0.96997 * 120.00298 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47302 * 60.00031 * 9 7 2 25 25 H 1.09004 * 109.47309 * 299.99848 * 9 7 2 26 26 H 1.09002 * 109.47254 * 59.99848 * 10 9 7 27 27 H 1.08996 * 109.46923 * 299.99980 * 10 9 7 28 28 H 1.09001 * 109.46569 * 59.99988 * 11 10 9 29 29 H 1.09000 * 109.46621 * 300.00255 * 11 10 9 30 30 H 1.09001 * 109.47326 * 60.00558 * 12 11 10 31 31 H 1.08992 * 109.47452 * 300.00334 * 12 11 10 32 32 H 1.08994 * 109.60625 * 298.73947 * 14 13 12 33 33 H 1.09002 * 109.59863 * 59.06124 * 14 13 12 34 34 H 1.09009 * 109.76324 * 51.46260 * 15 14 13 35 35 H 1.08997 * 109.76829 * 172.18256 * 15 14 13 36 36 H 1.09003 * 109.43786 * 287.29393 * 16 15 14 37 37 H 1.09001 * 109.44092 * 167.41231 * 16 15 14 38 38 H 1.07997 * 119.75587 * 359.36184 * 18 17 16 39 39 H 1.08002 * 120.05217 * 179.97438 * 19 18 17 40 40 H 1.08002 * 120.02647 * 179.90083 * 20 19 18 41 41 H 1.07996 * 119.79013 * 180.27502 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 -0.0001 12 6 2.4748 -6.1499 -0.0008 13 7 1.7404 -7.4222 -0.0008 14 6 0.6960 -7.4252 -1.0271 15 6 -0.0176 -8.7824 -0.9977 16 6 0.9706 -9.8455 -1.4831 17 6 2.2928 -9.6679 -0.7800 18 6 3.2040 -10.7114 -0.8285 19 6 4.4340 -10.5962 -0.2125 20 6 4.7607 -9.4340 0.4625 21 6 3.8610 -8.3913 0.5125 22 6 2.6140 -8.5034 -0.1053 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8721 -3.6042 0.8905 27 1 2.8720 -3.6042 -0.8894 28 1 0.8542 -5.0445 -0.8904 29 1 0.8535 -5.0450 0.8896 30 1 3.1014 -6.0926 0.8893 31 1 3.1014 -6.0917 -0.8906 32 1 -0.0210 -6.6304 -0.8216 33 1 1.1461 -7.2672 -2.0072 34 1 -0.3339 -9.0106 0.0202 35 1 -0.8858 -8.7568 -1.6563 36 1 1.1148 -9.7425 -2.5587 37 1 0.5736 -10.8367 -1.2643 38 1 2.9495 -11.6213 -1.3516 39 1 5.1385 -11.4137 -0.2543 40 1 5.7218 -9.3421 0.9466 41 1 4.1206 -7.4833 1.0366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385215096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:44 Heat of formation + Delta-G solvation = -10.579038 kcal Electronic energy + Delta-G solvation = -18760.985553 eV Core-core repulsion = 16024.735235 eV Total energy + Delta-G solvation = -2736.250318 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.54270 -38.21896 -36.49649 -35.34840 -33.98530 -31.29203 -31.03850 -29.71354 -27.04369 -25.59224 -24.24850 -23.70361 -22.10394 -21.48422 -20.37724 -18.45810 -17.94664 -17.04954 -16.88955 -16.51498 -16.29824 -15.55077 -15.20563 -14.91331 -14.56491 -14.41696 -14.26881 -14.04385 -13.70060 -13.57592 -13.20888 -13.02695 -12.86551 -12.49423 -12.35935 -12.31576 -12.11671 -11.98050 -11.71133 -11.42923 -11.35885 -11.22202 -11.07794 -10.71162 -10.56639 -9.61658 -8.58832 -8.20872 -6.32158 0.49337 0.52661 1.39302 1.39566 1.53090 2.40103 2.63124 2.98796 3.12112 3.70584 3.81848 3.89228 3.97220 4.14884 4.16876 4.23348 4.40470 4.43263 4.46740 4.51955 4.58434 4.65169 4.72338 4.79427 4.83204 4.91225 5.00346 5.05429 5.12838 5.20638 5.25669 5.25920 5.27903 5.36612 5.52524 5.58403 5.69579 5.75165 5.85239 5.93507 6.12091 6.24649 6.42324 6.85322 7.37296 8.91183 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035233 B = 0.003508 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.528622 B = 7980.386008 C = 8636.098800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.096 4.096 11 C -0.109 4.109 12 C 0.069 3.931 13 N -0.502 5.502 14 C 0.047 3.953 15 C -0.118 4.118 16 C -0.075 4.075 17 C -0.143 4.143 18 C -0.098 4.098 19 C -0.158 4.158 20 C -0.103 4.103 21 C -0.182 4.182 22 C 0.109 3.891 23 H 0.264 0.736 24 H -0.009 1.009 25 H -0.010 1.010 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.598 -23.126 -2.661 23.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.134 4.134 11 C -0.147 4.147 12 C -0.056 4.056 13 N -0.215 5.215 14 C -0.079 4.079 15 C -0.156 4.156 16 C -0.111 4.111 17 C -0.146 4.146 18 C -0.117 4.117 19 C -0.177 4.177 20 C -0.121 4.121 21 C -0.203 4.203 22 C 0.010 3.990 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.155 -22.975 -2.232 23.652 hybrid contribution 0.409 1.349 -0.386 1.462 sum 5.564 -21.625 -2.619 22.483 Atomic orbital electron populations 1.70103 1.07810 1.27713 1.51793 1.26004 0.95799 1.03433 0.94742 0.85392 0.79078 0.78711 0.77828 1.18572 1.20286 1.20330 1.21761 0.93572 0.92506 1.50373 0.92223 1.19006 0.94441 0.93128 0.94729 1.21391 0.98040 0.93378 1.00618 1.21638 0.97977 0.93084 1.01971 1.22220 0.95516 0.86234 1.01626 1.58166 1.13895 1.02241 1.47192 1.22308 0.93590 1.00060 0.91922 1.21716 0.98430 0.92805 1.02613 1.20555 0.90858 1.00250 0.99484 1.19858 0.98765 0.94319 1.01698 1.21255 0.93340 0.98221 0.98840 1.21304 0.97637 0.98636 1.00108 1.21216 0.99458 0.93051 0.98399 1.21353 0.93735 1.01148 1.04041 1.18923 0.91259 0.92285 0.96556 0.92764 0.99071 0.99129 0.92878 0.93085 0.92015 0.92218 0.89691 0.93935 0.89664 0.93926 0.91532 0.88539 0.90093 0.88931 0.83879 0.83895 0.84326 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.61 13.29 21.44 0.28 -57.33 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.10 -3.99 5.15 30.60 0.16 -3.83 16 11 C -0.11 -3.74 4.58 30.59 0.14 -3.60 16 12 C 0.07 2.03 4.33 86.30 0.37 2.41 16 13 N -0.50 -14.00 4.65 -695.88 -3.24 -17.24 16 14 C 0.05 1.17 4.72 86.52 0.41 1.58 16 15 C -0.12 -2.30 6.19 30.73 0.19 -2.11 16 16 C -0.07 -1.32 5.81 29.90 0.17 -1.14 16 17 C -0.14 -3.21 5.74 -19.71 -0.11 -3.33 16 18 C -0.10 -1.84 9.63 22.32 0.21 -1.63 16 19 C -0.16 -2.87 10.05 22.24 0.22 -2.65 16 20 C -0.10 -2.11 10.04 22.19 0.22 -1.89 16 21 C -0.18 -4.55 9.03 22.50 0.20 -4.35 16 22 C 0.11 2.88 5.81 38.30 0.22 3.10 16 23 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 24 H -0.01 -0.53 8.14 -2.39 -0.02 -0.54 16 25 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 26 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.06 2.10 6.35 -2.39 -0.02 2.08 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.08 2.41 6.35 -2.39 -0.02 2.39 16 31 H 0.04 1.25 8.12 -2.39 -0.02 1.23 16 32 H 0.09 2.22 6.28 -2.39 -0.01 2.20 16 33 H 0.04 1.06 8.11 -2.39 -0.02 1.04 16 34 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.12 3.03 5.98 -2.91 -0.02 3.01 16 Total: -1.00 -66.53 324.10 3.31 -63.21 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.98 Total: 11.56 kcal Atomic # 6 Polarization: -50.26 SS G_CDS: 3.26 Total: -47.00 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -2.95 Total: -74.57 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -66.53 3.31 -63.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385215096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.636 kcal (2) G-P(sol) polarization free energy of solvation -66.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds