Wall clock time and date at job start Mon Mar 30 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99779 * 2 1 4 4 H 1.48502 * 109.46746 * 269.99858 * 3 2 1 5 5 H 1.48497 * 109.46759 * 29.99870 * 3 2 1 6 6 H 1.48498 * 109.47070 * 150.00064 * 3 2 1 7 7 C 1.37873 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00105 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00236 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47025 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46573 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46573 * 180.02562 * 11 10 9 13 13 N 1.46497 * 109.47031 * 180.02562 * 12 11 10 14 14 N 1.39861 * 125.46777 * 270.02559 * 13 12 11 15 15 C 1.30233 * 110.09818 * 179.97438 * 14 13 12 16 16 C 1.45966 * 107.80201 * 0.02562 * 15 14 13 17 17 C 1.40004 * 133.84707 * 179.97438 * 16 15 14 18 18 C 1.36292 * 119.87845 * 180.02562 * 17 16 15 19 19 C 1.39633 * 120.56218 * 359.95347 * 18 17 16 20 20 N 1.39660 * 119.74604 * 180.02562 * 19 18 17 21 21 C 1.38255 * 120.50215 * 0.02653 * 19 18 17 22 22 C 1.37076 * 125.46833 * 89.99557 * 13 12 11 23 23 H 0.96997 * 120.00133 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47327 * 59.99595 * 9 7 2 25 25 H 1.09001 * 109.46671 * 299.99939 * 9 7 2 26 26 H 1.08999 * 109.46863 * 60.00004 * 10 9 7 27 27 H 1.08993 * 109.47410 * 299.99784 * 10 9 7 28 28 H 1.08997 * 109.46726 * 60.00609 * 11 10 9 29 29 H 1.09001 * 109.47191 * 299.99893 * 11 10 9 30 30 H 1.09004 * 109.47303 * 60.00210 * 12 11 10 31 31 H 1.09001 * 109.47275 * 299.99842 * 12 11 10 32 32 H 1.08002 * 126.09852 * 180.25916 * 15 14 13 33 33 H 1.08001 * 120.06051 * 359.97058 * 17 16 15 34 34 H 1.07995 * 119.71885 * 179.97438 * 18 17 16 35 35 H 0.97005 * 120.00146 * 180.02562 * 20 19 18 36 36 H 0.96997 * 120.00254 * 0.02662 * 20 19 18 37 37 H 1.08001 * 120.16026 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5517 -2.6363 0.0009 12 6 6.0617 -4.0788 0.0002 13 7 7.5267 -4.0788 0.0007 14 7 8.3387 -4.0775 -1.1380 15 6 9.5943 -4.0773 -0.7924 16 6 9.6557 -4.0791 0.6660 17 6 10.7053 -4.0802 1.5925 18 6 10.4322 -4.0825 2.9278 19 6 9.1119 -4.0827 3.3825 20 7 8.8516 -4.0845 4.7546 21 6 8.0606 -4.0812 2.4847 22 6 8.3216 -4.0794 1.1174 23 1 -0.4850 0.8400 0.0004 24 1 3.8746 -0.6799 0.8910 25 1 3.8752 -0.6803 -0.8889 26 1 3.6586 -3.1500 -0.8893 27 1 3.6580 -3.1505 0.8907 28 1 5.9149 -2.1226 0.8910 29 1 5.9150 -2.1224 -0.8890 30 1 5.6984 -4.5922 -0.8901 31 1 5.6985 -4.5931 0.8899 32 1 10.4394 -4.0724 -1.4648 33 1 11.7294 -4.0802 1.2498 34 1 11.2438 -4.0837 3.6403 35 1 7.9359 -4.0850 5.0746 36 1 9.5865 -4.0851 5.3877 37 1 7.0415 -4.0818 2.8425 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385370936.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:59 Heat of formation + Delta-G solvation = 68.118528 kcal Electronic energy + Delta-G solvation = -18171.480892 eV Core-core repulsion = 15335.102813 eV Total energy + Delta-G solvation = -2836.378079 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.13531 -37.94955 -35.65867 -33.86640 -33.11763 -31.89542 -30.32933 -28.34386 -28.11553 -25.13731 -22.97442 -22.17310 -21.73478 -20.31283 -20.08470 -17.48517 -17.15115 -16.68484 -16.61884 -15.27431 -15.02792 -14.93042 -14.27394 -14.12128 -13.94541 -13.61963 -12.99612 -12.68979 -12.63915 -12.48165 -12.17934 -11.89963 -11.22541 -11.18601 -10.88555 -10.73213 -10.53858 -10.36045 -10.07726 -9.88310 -9.73266 -9.54667 -9.17700 -8.53244 -7.89553 -7.58274 -6.04025 -4.01951 1.07020 1.60623 2.50541 2.62568 3.31661 3.38732 3.43321 3.66818 3.81961 4.46069 4.51622 4.63335 4.83769 5.05716 5.20589 5.24711 5.30454 5.35555 5.45613 5.51463 5.57453 5.84388 5.96084 6.03475 6.09147 6.27371 6.31896 6.45481 6.56113 6.66519 6.70043 6.88539 7.12841 7.30143 7.31661 7.43156 7.54658 7.78659 7.79999 8.54183 9.00754 9.58913 11.09465 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.024387 B = 0.003973 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.883216 B = 7045.310049 C = 7526.627396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.099 4.099 11 C -0.137 4.137 12 C 0.140 3.860 13 N -0.402 5.402 14 N -0.260 5.260 15 C 0.073 3.927 16 C -0.234 4.234 17 C 0.002 3.998 18 C -0.224 4.224 19 C 0.259 3.741 20 N -0.874 5.874 21 C -0.235 4.235 22 C 0.179 3.821 23 H 0.263 0.737 24 H 0.015 0.985 25 H 0.011 0.989 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.191 0.809 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.400 0.600 36 H 0.398 0.602 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.952 -9.828 6.689 25.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.175 4.175 12 C 0.019 3.981 13 N -0.189 5.189 14 N -0.072 5.072 15 C -0.125 4.125 16 C -0.243 4.243 17 C -0.019 4.019 18 C -0.247 4.247 19 C 0.151 3.849 20 N -0.413 5.413 21 C -0.264 4.264 22 C 0.062 3.938 23 H 0.072 0.928 24 H 0.033 0.967 25 H 0.029 0.971 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.207 0.793 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.228 0.772 36 H 0.227 0.773 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 21.783 -9.720 5.632 24.510 hybrid contribution 0.691 1.007 1.037 1.602 sum 22.474 -8.713 6.669 25.009 Atomic orbital electron populations 1.69914 1.06291 1.26871 1.51284 1.25032 0.94725 0.99178 0.94568 0.86780 0.80337 0.83630 0.78561 1.20262 1.21371 1.19079 1.21159 0.89531 0.94461 1.50710 0.91023 1.19561 0.97066 0.92193 0.96253 1.21404 0.90696 1.00306 1.01311 1.22128 0.98393 0.94418 1.02580 1.21810 0.73039 0.99372 1.03866 1.48529 1.05901 1.63769 1.00696 1.76592 1.02502 1.18639 1.09423 1.24953 0.94696 0.99824 0.92996 1.19743 0.92957 1.18314 0.93330 1.20026 0.97506 0.93011 0.91352 1.20116 0.94379 1.14268 0.95912 1.17400 0.92735 0.90825 0.83982 1.42500 1.10811 1.84567 1.03373 1.19202 0.98443 1.19748 0.88958 1.18420 0.90483 0.95892 0.89004 0.92754 0.96708 0.97073 0.92441 0.92579 0.92053 0.91620 0.89007 0.89453 0.79257 0.85629 0.86025 0.77185 0.77346 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 7 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -1.94 5.15 -26.73 -0.14 -2.07 16 11 C -0.14 -2.30 5.54 -26.73 -0.15 -2.45 16 12 C 0.14 2.03 6.37 -4.04 -0.03 2.00 16 13 N -0.40 -6.15 3.65 -58.71 -0.21 -6.36 16 14 N -0.26 -3.97 12.40 31.88 0.40 -3.58 16 15 C 0.07 0.90 12.28 -15.14 -0.19 0.71 16 16 C -0.23 -2.99 6.36 -105.16 -0.67 -3.66 16 17 C 0.00 0.02 10.05 -39.62 -0.40 -0.38 16 18 C -0.22 -2.14 9.80 -39.76 -0.39 -2.53 16 19 C 0.26 2.71 6.74 -83.76 -0.56 2.15 16 20 N -0.87 -6.36 9.08 32.42 0.29 -6.07 16 21 C -0.23 -2.97 9.83 -39.22 -0.39 -3.36 16 22 C 0.18 2.57 6.86 -84.18 -0.58 1.99 16 23 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 24 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 25 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.09 1.12 8.13 -51.93 -0.42 0.70 16 32 H 0.19 1.52 8.06 -52.49 -0.42 1.09 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.40 2.52 8.83 -40.82 -0.36 2.16 16 36 H 0.40 1.99 8.84 -40.82 -0.36 1.63 16 37 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 315.28 15.07 4.75 4.75 Total: -1.00 -34.11 315.28 -8.00 -42.10 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.30 Total: 0.68 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -4.03 Total: -21.59 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 1.25 Total: -43.50 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.11 -8.00 -42.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385370936.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.220 kcal (2) G-P(sol) polarization free energy of solvation -34.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds