Wall clock time and date at job start Mon Mar 30 2020 06:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99779 * 2 1 4 4 H 1.48502 * 109.46746 * 269.99858 * 3 2 1 5 5 H 1.48497 * 109.46759 * 29.99870 * 3 2 1 6 6 H 1.48498 * 109.47070 * 150.00064 * 3 2 1 7 7 C 1.37873 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00105 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00236 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47025 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46573 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46573 * 180.02562 * 11 10 9 13 13 N 1.46497 * 109.47031 * 180.02562 * 12 11 10 14 14 N 1.39861 * 125.46777 * 270.02559 * 13 12 11 15 15 C 1.30233 * 110.09818 * 179.97438 * 14 13 12 16 16 C 1.45966 * 107.80201 * 0.02562 * 15 14 13 17 17 C 1.40004 * 133.84707 * 179.97438 * 16 15 14 18 18 C 1.36292 * 119.87845 * 180.02562 * 17 16 15 19 19 C 1.39633 * 120.56218 * 359.95347 * 18 17 16 20 20 N 1.39660 * 119.74604 * 180.02562 * 19 18 17 21 21 C 1.38255 * 120.50215 * 0.02653 * 19 18 17 22 22 C 1.37076 * 125.46833 * 89.99557 * 13 12 11 23 23 H 0.96997 * 120.00133 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47327 * 59.99595 * 9 7 2 25 25 H 1.09001 * 109.46671 * 299.99939 * 9 7 2 26 26 H 1.08999 * 109.46863 * 60.00004 * 10 9 7 27 27 H 1.08993 * 109.47410 * 299.99784 * 10 9 7 28 28 H 1.08997 * 109.46726 * 60.00609 * 11 10 9 29 29 H 1.09001 * 109.47191 * 299.99893 * 11 10 9 30 30 H 1.09004 * 109.47303 * 60.00210 * 12 11 10 31 31 H 1.09001 * 109.47275 * 299.99842 * 12 11 10 32 32 H 1.08002 * 126.09852 * 180.25916 * 15 14 13 33 33 H 1.08001 * 120.06051 * 359.97058 * 17 16 15 34 34 H 1.07995 * 119.71885 * 179.97438 * 18 17 16 35 35 H 0.97005 * 120.00146 * 180.02562 * 20 19 18 36 36 H 0.96997 * 120.00254 * 0.02662 * 20 19 18 37 37 H 1.08001 * 120.16026 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5517 -2.6363 0.0009 12 6 6.0617 -4.0788 0.0002 13 7 7.5267 -4.0788 0.0007 14 7 8.3387 -4.0775 -1.1380 15 6 9.5943 -4.0773 -0.7924 16 6 9.6557 -4.0791 0.6660 17 6 10.7053 -4.0802 1.5925 18 6 10.4322 -4.0825 2.9278 19 6 9.1119 -4.0827 3.3825 20 7 8.8516 -4.0845 4.7546 21 6 8.0606 -4.0812 2.4847 22 6 8.3216 -4.0794 1.1174 23 1 -0.4850 0.8400 0.0004 24 1 3.8746 -0.6799 0.8910 25 1 3.8752 -0.6803 -0.8889 26 1 3.6586 -3.1500 -0.8893 27 1 3.6580 -3.1505 0.8907 28 1 5.9149 -2.1226 0.8910 29 1 5.9150 -2.1224 -0.8890 30 1 5.6984 -4.5922 -0.8901 31 1 5.6985 -4.5931 0.8899 32 1 10.4394 -4.0724 -1.4648 33 1 11.7294 -4.0802 1.2498 34 1 11.2438 -4.0837 3.6403 35 1 7.9359 -4.0850 5.0746 36 1 9.5865 -4.0851 5.3877 37 1 7.0415 -4.0818 2.8425 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385370936.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:58 Heat of formation + Delta-G solvation = 45.737602 kcal Electronic energy + Delta-G solvation = -18172.451402 eV Core-core repulsion = 15335.102813 eV Total energy + Delta-G solvation = -2837.348589 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.04027 -38.76988 -37.12121 -35.14645 -34.42820 -33.44122 -31.51773 -29.74487 -28.94709 -26.70559 -23.93883 -23.59866 -22.60298 -21.88427 -21.27300 -18.90480 -18.36584 -17.96024 -17.38165 -16.47787 -16.40297 -16.02508 -15.84078 -15.25586 -14.95003 -14.70492 -14.35129 -14.11177 -14.02081 -13.77042 -13.30660 -13.28593 -12.94375 -12.56609 -12.25450 -11.98903 -11.81808 -11.67440 -11.59158 -11.45545 -11.35112 -11.07035 -10.82237 -10.79465 -8.80750 -8.38149 -8.32471 -6.36436 0.24788 0.74735 1.32706 1.33667 1.46133 1.53428 1.72055 2.33023 2.98671 3.01670 3.02667 3.59545 3.77438 3.94243 3.99317 4.11140 4.25235 4.31585 4.44679 4.50390 4.60500 4.71810 4.73944 4.82045 4.96214 5.07111 5.08679 5.18358 5.32352 5.47861 5.54684 5.55373 5.63323 5.67570 5.93068 6.17603 6.25533 6.58575 6.71305 6.83744 7.02016 7.28452 8.84286 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.024387 B = 0.003973 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.883216 B = 7045.310049 C = 7526.627396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.251 1.251 7 C -0.533 4.533 8 H 0.035 0.965 9 C -0.012 4.012 10 C -0.090 4.090 11 C -0.119 4.119 12 C 0.146 3.854 13 N -0.420 5.420 14 N -0.306 5.306 15 C 0.085 3.915 16 C -0.257 4.257 17 C 0.008 3.992 18 C -0.226 4.226 19 C 0.264 3.736 20 N -0.861 5.861 21 C -0.265 4.265 22 C 0.154 3.846 23 H 0.267 0.733 24 H 0.017 0.983 25 H 0.012 0.988 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.228 0.772 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.405 0.595 36 H 0.412 0.588 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.328 -9.420 7.745 29.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.773 3.227 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.175 1.175 7 C -0.571 4.571 8 H 0.054 0.946 9 C -0.050 4.050 10 C -0.129 4.129 11 C -0.157 4.157 12 C 0.025 3.975 13 N -0.208 5.208 14 N -0.117 5.117 15 C -0.112 4.112 16 C -0.266 4.266 17 C -0.013 4.013 18 C -0.249 4.249 19 C 0.153 3.847 20 N -0.400 5.400 21 C -0.294 4.294 22 C 0.038 3.962 23 H 0.076 0.924 24 H 0.035 0.965 25 H 0.031 0.969 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.245 0.755 33 H 0.178 0.822 34 H 0.171 0.829 35 H 0.234 0.766 36 H 0.243 0.757 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 25.181 -9.329 6.728 27.683 hybrid contribution -0.318 0.799 0.817 1.186 sum 24.863 -8.530 7.545 27.347 Atomic orbital electron populations 1.70059 1.08183 1.28186 1.52649 1.25998 0.95619 1.03434 0.94132 0.85672 0.79370 0.78502 0.79190 1.19255 1.20554 1.17523 1.21512 0.92031 0.93262 1.50338 0.94625 1.19526 0.93987 0.95262 0.96178 1.21243 0.92766 0.97359 1.01486 1.21872 0.95941 0.96186 1.01732 1.21623 0.73740 0.97577 1.04571 1.48467 1.05772 1.65299 1.01215 1.76539 1.03796 1.21272 1.10107 1.25648 0.94777 0.97070 0.93659 1.20093 0.93115 1.19455 0.93927 1.20449 0.98481 0.91272 0.91093 1.20524 0.94672 1.13155 0.96530 1.17606 0.92860 0.89347 0.84852 1.42525 1.11836 1.83068 1.02523 1.19323 0.99054 1.22062 0.88975 1.18831 0.91362 0.96585 0.89374 0.92422 0.96494 0.96916 0.92605 0.92171 0.92433 0.92774 0.88893 0.88200 0.75531 0.82190 0.82918 0.76602 0.75744 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 2 C 0.00 0.30 5.47 84.65 0.46 0.76 16 3 Si 0.95 45.69 27.47 68.60 1.88 47.58 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.25 -11.42 6.54 99.48 0.65 -10.77 16 7 C -0.53 -31.62 9.66 25.60 0.25 -31.37 16 8 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 9 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 10 C -0.09 -3.56 5.15 30.60 0.16 -3.41 16 11 C -0.12 -3.99 5.54 30.60 0.17 -3.82 16 12 C 0.15 4.27 6.37 86.38 0.55 4.82 16 13 N -0.42 -12.86 3.65 -339.67 -1.24 -14.10 16 14 N -0.31 -9.24 12.40 -53.07 -0.66 -9.90 16 15 C 0.09 1.97 12.28 86.93 1.07 3.04 16 16 C -0.26 -6.11 6.36 -20.21 -0.13 -6.23 16 17 C 0.01 0.13 10.05 22.24 0.22 0.36 16 18 C -0.23 -3.55 9.80 22.15 0.22 -3.33 16 19 C 0.26 4.95 6.74 38.23 0.26 5.21 16 20 N -0.86 -10.37 9.08 -51.33 -0.47 -10.84 16 21 C -0.27 -6.53 9.83 22.50 0.22 -6.31 16 22 C 0.15 4.35 6.86 39.19 0.27 4.62 16 23 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 24 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 25 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 31 H 0.10 2.59 8.13 -2.39 -0.02 2.57 16 32 H 0.23 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 35 H 0.40 4.33 8.83 -92.70 -0.82 3.51 16 36 H 0.41 2.79 8.84 -92.71 -0.82 1.97 16 37 H 0.12 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -75.29 315.28 3.04 -72.24 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -0.61 Total: 11.52 kcal Atomic # 6 Polarization: -39.98 SS G_CDS: 3.84 Total: -36.14 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -2.06 Total: -95.19 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.88 Total: 47.58 kcal Total: -75.29 3.04 -72.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385370936.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.980 kcal (2) G-P(sol) polarization free energy of solvation -75.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds