Wall clock time and date at job start Mon Mar 30 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47344 * 2 1 4 4 C 1.46495 * 120.00405 * 275.36801 * 3 2 1 5 5 C 1.50702 * 109.47003 * 274.99807 * 4 3 2 6 6 H 1.07996 * 119.99971 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99968 * 179.97438 * 5 4 3 8 8 N 1.31520 * 120.00017 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00247 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46717 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47264 * 120.00208 * 9 7 5 12 12 H 1.48495 * 109.47078 * 240.00579 * 9 7 5 13 13 S 1.65605 * 119.99598 * 95.36627 * 3 2 1 14 14 O 1.42101 * 102.99745 * 215.05580 * 13 3 2 15 15 C 1.81401 * 102.99780 * 101.20463 * 13 3 2 16 16 C 1.52996 * 109.47292 * 300.88311 * 15 13 3 17 17 C 1.52997 * 109.47435 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.47401 * 60.00016 * 17 16 15 19 19 C 1.53002 * 109.47100 * 300.00421 * 18 17 16 20 20 C 1.53006 * 109.46780 * 180.88542 * 15 13 3 21 21 H 1.08993 * 109.46993 * 175.08574 * 1 2 3 22 22 H 1.08993 * 109.46656 * 295.08464 * 1 2 3 23 23 H 1.08994 * 109.46846 * 55.08102 * 1 2 3 24 24 H 1.09009 * 109.47249 * 240.00324 * 2 1 3 25 25 H 1.09006 * 109.47134 * 120.00633 * 2 1 3 26 26 H 1.09002 * 109.46990 * 34.99352 * 4 3 2 27 27 H 1.08995 * 109.47420 * 155.00062 * 4 3 2 28 28 H 0.96996 * 119.99682 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.47519 * 60.89027 * 15 13 3 30 30 H 1.09004 * 109.47022 * 300.00445 * 16 15 13 31 31 H 1.08995 * 109.46985 * 60.00321 * 16 15 13 32 32 H 1.09004 * 109.47145 * 300.00083 * 17 16 15 33 33 H 1.08996 * 109.47645 * 180.02562 * 17 16 15 34 34 H 1.08997 * 109.47729 * 180.02562 * 18 17 16 35 35 H 1.09004 * 109.46916 * 59.99927 * 18 17 16 36 36 H 1.08998 * 109.47016 * 299.99958 * 19 18 17 37 37 H 1.08995 * 109.47271 * 179.97438 * 19 18 17 38 38 H 1.08994 * 109.47264 * 299.99723 * 20 15 13 39 39 H 1.08998 * 109.47403 * 60.00147 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1507 2.1114 -1.2631 5 6 3.4835 1.7929 -1.8902 6 1 4.1637 1.1140 -1.3974 7 6 3.8340 2.3673 -3.0936 8 7 3.0054 3.1936 -3.6940 9 14 5.4858 1.9719 -3.8714 10 1 6.2269 1.0220 -3.0032 11 1 5.2701 1.3572 -5.2058 12 1 6.2731 3.2217 -4.0235 13 16 2.4209 2.1170 1.4280 14 8 2.0293 3.4661 1.2137 15 6 4.2315 2.0086 1.4466 16 6 4.6553 0.5400 1.3804 17 6 6.1824 0.4485 1.3968 18 6 6.7171 1.0759 2.6857 19 6 6.2934 2.5446 2.7521 20 6 4.7667 2.6362 2.7354 21 1 -0.3633 -1.0238 -0.0880 22 1 -0.3632 0.4357 0.9307 23 1 -0.3633 0.5882 -0.8426 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5140 0.8900 26 1 1.3501 1.8139 -1.9403 27 1 2.0858 3.1825 -1.0721 28 1 3.2522 3.5979 -4.5404 29 1 4.6365 2.5428 0.5871 30 1 4.2503 0.0059 2.2400 31 1 4.2740 0.0930 0.4624 32 1 6.5877 0.9827 0.5374 33 1 6.4843 -0.5977 1.3492 34 1 7.8051 1.0111 2.6973 35 1 6.3119 0.5417 3.5451 36 1 6.6986 3.0788 1.8927 37 1 6.6740 2.9914 3.6705 38 1 4.4648 3.6825 2.7826 39 1 4.3618 2.1021 3.5950 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385461709.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:01 Heat of formation + Delta-G solvation = -68.353816 kcal Electronic energy + Delta-G solvation = -18788.776838 eV Core-core repulsion = 16049.632074 eV Total energy + Delta-G solvation = -2739.144764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -37.83162 -35.67078 -34.86432 -32.60773 -30.43713 -30.41847 -29.69323 -26.31607 -23.02995 -22.37326 -22.22465 -21.11243 -19.44546 -17.06101 -16.31168 -15.76621 -15.21653 -14.94787 -14.23378 -14.15456 -13.87955 -13.81746 -13.04147 -12.90474 -12.70419 -12.11844 -12.01966 -11.89962 -11.62467 -11.39149 -11.16187 -10.96544 -10.87970 -10.83292 -10.71671 -10.44754 -10.42539 -10.12710 -10.04539 -9.79439 -9.53929 -9.20805 -8.40722 -7.75918 -7.30429 -5.99422 -4.05595 2.79892 3.26964 3.31147 3.35382 3.39622 4.43028 4.72937 5.01263 5.07186 5.18548 5.32204 5.47080 5.55105 5.60576 5.76532 5.81424 5.83314 5.87370 5.89613 5.93621 6.02219 6.09254 6.24338 6.38215 6.39793 6.42771 6.52854 6.56367 6.70314 6.71640 6.83676 6.92729 7.56252 7.69227 7.95266 8.06746 8.33515 9.01918 9.59521 11.07389 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.014423 B = 0.010212 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.854259 B = 2741.088721 C = 3803.532646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.139 3.861 3 N -0.872 5.872 4 C 0.245 3.755 5 C -0.528 4.528 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 S 1.466 4.534 14 O -0.888 6.888 15 C -0.454 4.454 16 C -0.081 4.081 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.114 4.114 20 C -0.090 4.090 21 H 0.054 0.946 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.022 0.978 27 H 0.037 0.963 28 H 0.260 0.740 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.580 -9.027 14.290 16.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.011 3.989 3 N -0.703 5.703 4 C 0.121 3.879 5 C -0.568 4.568 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.212 1.212 13 S 1.568 4.432 14 O -0.874 6.874 15 C -0.569 4.569 16 C -0.120 4.120 17 C -0.155 4.155 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.129 4.129 21 H 0.073 0.927 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.889 -8.460 14.671 16.958 hybrid contribution 2.159 0.975 -2.519 3.458 sum 3.048 -7.485 12.152 14.594 Atomic orbital electron populations 1.22269 0.97837 1.00886 1.01976 1.20907 0.92601 0.83840 1.01507 1.54858 1.76622 1.19443 1.19339 1.19080 0.95971 0.92411 0.80461 1.21733 1.02694 1.27030 1.05357 0.91982 1.24992 0.96946 0.95164 0.97201 1.69969 1.35832 1.30286 1.17169 0.86593 0.84343 0.78122 0.79280 1.19714 1.21015 1.21175 1.67534 0.85857 0.91659 0.98185 1.93041 1.75087 1.36506 1.82749 1.28233 1.25326 1.01086 1.02296 1.21048 0.95375 0.93594 1.01942 1.21496 0.96572 0.99719 0.97681 1.21495 0.99502 0.96023 0.98162 1.21476 0.96086 0.96622 1.01070 1.21101 0.95783 0.99999 0.95998 0.92703 0.93267 0.92377 0.91348 0.92015 0.95971 0.94530 0.92975 0.88068 0.92182 0.90650 0.92194 0.92613 0.92910 0.92200 0.92281 0.92649 0.92402 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 10.23 37.16 0.38 -1.99 16 2 C 0.14 2.15 5.98 -4.04 -0.02 2.12 16 3 N -0.87 -17.45 2.16 -115.66 -0.25 -17.70 16 4 C 0.25 6.53 5.40 -5.20 -0.03 6.50 16 5 C -0.53 -14.68 9.09 -34.44 -0.31 -14.99 16 6 H 0.06 1.66 6.77 -52.49 -0.36 1.30 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -27.48 13.29 55.43 0.74 -26.74 16 9 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 S 1.47 25.87 12.94 -107.50 -1.39 24.48 16 14 O -0.89 -21.91 16.63 -35.23 -0.59 -22.49 16 15 C -0.45 -7.76 2.80 -26.73 -0.07 -7.84 16 16 C -0.08 -1.18 5.11 -26.73 -0.14 -1.31 16 17 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 16 18 C -0.11 -1.39 5.92 -26.73 -0.16 -1.55 16 19 C -0.11 -1.53 5.92 -26.75 -0.16 -1.69 16 20 C -0.09 -1.29 5.21 -26.75 -0.14 -1.43 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.96 8.05 -51.93 -0.42 0.55 16 24 H 0.07 1.16 8.11 -51.92 -0.42 0.74 16 25 H 0.06 0.69 7.99 -51.93 -0.41 0.28 16 26 H 0.02 0.63 8.02 -51.93 -0.42 0.21 16 27 H 0.04 1.14 6.92 -51.93 -0.36 0.78 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.10 2.23 7.85 -51.92 -0.41 1.83 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.23 6.26 -51.93 -0.33 0.91 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 320.75 15.07 4.83 4.83 Total: -1.00 -35.78 320.75 -9.49 -45.27 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -6.90 Total: -2.34 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -0.91 Total: -22.37 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.49 Total: -44.44 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.59 Total: -22.49 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 25.87 SS G_CDS: -1.39 Total: 24.48 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.78 -9.49 -45.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385461709.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.087 kcal (2) G-P(sol) polarization free energy of solvation -35.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds