Wall clock time and date at job start Mon Mar 30 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47344 * 2 1 4 4 C 1.46495 * 120.00405 * 275.36801 * 3 2 1 5 5 C 1.50702 * 109.47003 * 274.99807 * 4 3 2 6 6 H 1.07996 * 119.99971 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99968 * 179.97438 * 5 4 3 8 8 N 1.31520 * 120.00017 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00247 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46717 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47264 * 120.00208 * 9 7 5 12 12 H 1.48495 * 109.47078 * 240.00579 * 9 7 5 13 13 S 1.65605 * 119.99598 * 95.36627 * 3 2 1 14 14 O 1.42101 * 102.99745 * 215.05580 * 13 3 2 15 15 C 1.81401 * 102.99780 * 101.20463 * 13 3 2 16 16 C 1.52996 * 109.47292 * 300.88311 * 15 13 3 17 17 C 1.52997 * 109.47435 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.47401 * 60.00016 * 17 16 15 19 19 C 1.53002 * 109.47100 * 300.00421 * 18 17 16 20 20 C 1.53006 * 109.46780 * 180.88542 * 15 13 3 21 21 H 1.08993 * 109.46993 * 175.08574 * 1 2 3 22 22 H 1.08993 * 109.46656 * 295.08464 * 1 2 3 23 23 H 1.08994 * 109.46846 * 55.08102 * 1 2 3 24 24 H 1.09009 * 109.47249 * 240.00324 * 2 1 3 25 25 H 1.09006 * 109.47134 * 120.00633 * 2 1 3 26 26 H 1.09002 * 109.46990 * 34.99352 * 4 3 2 27 27 H 1.08995 * 109.47420 * 155.00062 * 4 3 2 28 28 H 0.96996 * 119.99682 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.47519 * 60.89027 * 15 13 3 30 30 H 1.09004 * 109.47022 * 300.00445 * 16 15 13 31 31 H 1.08995 * 109.46985 * 60.00321 * 16 15 13 32 32 H 1.09004 * 109.47145 * 300.00083 * 17 16 15 33 33 H 1.08996 * 109.47645 * 180.02562 * 17 16 15 34 34 H 1.08997 * 109.47729 * 180.02562 * 18 17 16 35 35 H 1.09004 * 109.46916 * 59.99927 * 18 17 16 36 36 H 1.08998 * 109.47016 * 299.99958 * 19 18 17 37 37 H 1.08995 * 109.47271 * 179.97438 * 19 18 17 38 38 H 1.08994 * 109.47264 * 299.99723 * 20 15 13 39 39 H 1.08998 * 109.47403 * 60.00147 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1507 2.1114 -1.2631 5 6 3.4835 1.7929 -1.8902 6 1 4.1637 1.1140 -1.3974 7 6 3.8340 2.3673 -3.0936 8 7 3.0054 3.1936 -3.6940 9 14 5.4858 1.9719 -3.8714 10 1 6.2269 1.0220 -3.0032 11 1 5.2701 1.3572 -5.2058 12 1 6.2731 3.2217 -4.0235 13 16 2.4209 2.1170 1.4280 14 8 2.0293 3.4661 1.2137 15 6 4.2315 2.0086 1.4466 16 6 4.6553 0.5400 1.3804 17 6 6.1824 0.4485 1.3968 18 6 6.7171 1.0759 2.6857 19 6 6.2934 2.5446 2.7521 20 6 4.7667 2.6362 2.7354 21 1 -0.3633 -1.0238 -0.0880 22 1 -0.3632 0.4357 0.9307 23 1 -0.3633 0.5882 -0.8426 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5140 0.8900 26 1 1.3501 1.8139 -1.9403 27 1 2.0858 3.1825 -1.0721 28 1 3.2522 3.5979 -4.5404 29 1 4.6365 2.5428 0.5871 30 1 4.2503 0.0059 2.2400 31 1 4.2740 0.0930 0.4624 32 1 6.5877 0.9827 0.5374 33 1 6.4843 -0.5977 1.3492 34 1 7.8051 1.0111 2.6973 35 1 6.3119 0.5417 3.5451 36 1 6.6986 3.0788 1.8927 37 1 6.6740 2.9914 3.6705 38 1 4.4648 3.6825 2.7826 39 1 4.3618 2.1021 3.5950 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385461709.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:01 Heat of formation + Delta-G solvation = -93.013003 kcal Electronic energy + Delta-G solvation = -18789.846140 eV Core-core repulsion = 16049.632074 eV Total energy + Delta-G solvation = -2740.214066 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.98005 -37.34624 -36.67362 -34.71826 -31.67848 -31.55180 -31.24794 -28.28384 -24.88694 -23.58028 -23.36955 -22.65581 -20.60043 -18.73457 -18.40332 -17.27855 -16.85434 -16.63510 -15.89828 -15.55441 -15.03513 -14.95826 -14.72043 -14.37316 -14.13923 -13.80515 -13.33077 -13.26583 -13.19668 -12.93233 -12.89907 -12.68761 -12.51544 -12.18001 -12.11714 -11.95255 -11.92382 -11.72782 -11.50607 -11.25196 -10.90110 -10.77321 -10.64438 -9.50537 -8.97651 -8.21151 -6.38411 1.26975 1.28478 1.32538 1.40728 1.78584 2.31341 3.04584 3.20083 3.88453 3.90791 4.13959 4.18780 4.39204 4.47326 4.61327 4.63306 4.68344 4.70902 4.78423 4.84414 4.87894 4.98580 5.15809 5.17462 5.20728 5.28028 5.28733 5.32690 5.40141 5.43563 5.51042 5.56644 5.67079 5.67387 5.81693 6.09715 6.27569 6.79469 7.31971 8.83492 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.014423 B = 0.010212 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.854259 B = 2741.088721 C = 3803.532646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.129 3.871 3 N -0.879 5.879 4 C 0.267 3.733 5 C -0.527 4.527 6 H 0.073 0.927 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.960 3.040 10 H -0.257 1.257 11 H -0.273 1.273 12 H -0.289 1.289 13 S 1.537 4.463 14 O -0.961 6.961 15 C -0.447 4.447 16 C -0.082 4.082 17 C -0.119 4.119 18 C -0.108 4.108 19 C -0.116 4.116 20 C -0.093 4.093 21 H 0.089 0.911 22 H 0.066 0.934 23 H 0.017 0.983 24 H 0.052 0.948 25 H 0.121 0.879 26 H -0.005 1.005 27 H -0.021 1.021 28 H 0.262 0.738 29 H 0.040 0.960 30 H 0.114 0.886 31 H 0.055 0.945 32 H 0.019 0.981 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.025 0.975 37 H 0.081 0.919 38 H 0.034 0.966 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.001 -12.265 17.064 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.003 3.997 3 N -0.709 5.709 4 C 0.140 3.860 5 C -0.567 4.567 6 H 0.091 0.909 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.784 3.216 10 H -0.181 1.181 11 H -0.198 1.198 12 H -0.216 1.216 13 S 1.641 4.359 14 O -0.948 6.948 15 C -0.565 4.565 16 C -0.120 4.120 17 C -0.157 4.157 18 C -0.145 4.145 19 C -0.154 4.154 20 C -0.132 4.132 21 H 0.108 0.892 22 H 0.085 0.915 23 H 0.037 0.963 24 H 0.070 0.930 25 H 0.138 0.862 26 H 0.013 0.987 27 H -0.003 1.003 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.132 0.868 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.044 0.956 37 H 0.099 0.901 38 H 0.053 0.947 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.282 -11.735 17.459 21.160 hybrid contribution 1.725 1.977 -3.309 4.223 sum 4.006 -9.758 14.150 17.649 Atomic orbital electron populations 1.22252 0.96687 1.02540 1.01224 1.21318 0.93673 0.81158 1.03544 1.54758 1.77650 1.21314 1.17218 1.18420 0.94878 0.89840 0.82831 1.22042 1.03002 1.26438 1.05193 0.90920 1.25975 1.00960 0.95081 0.98127 1.70128 1.38179 1.31814 1.17779 0.85479 0.79413 0.77932 0.78737 1.18087 1.19835 1.21555 1.66389 0.85441 0.88409 0.95653 1.92917 1.77643 1.40571 1.83671 1.28164 1.23533 1.03149 1.01622 1.21159 0.96145 0.91319 1.03392 1.21528 0.95961 1.00831 0.97425 1.21493 1.00336 0.94625 0.98087 1.21506 0.95021 0.97993 1.00910 1.21228 0.96920 0.99101 0.95967 0.89188 0.91475 0.96321 0.92985 0.86156 0.98738 1.00333 0.92932 0.94120 0.86759 0.92583 0.96176 0.90204 0.91856 0.88772 0.95650 0.90062 0.94738 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 10.23 71.98 0.74 -3.68 16 2 C 0.13 3.74 5.98 86.38 0.52 4.26 16 3 N -0.88 -35.75 2.16 -519.84 -1.12 -36.88 16 4 C 0.27 15.11 5.40 85.63 0.46 15.57 16 5 C -0.53 -30.43 9.09 25.60 0.23 -30.20 16 6 H 0.07 3.95 6.77 -2.91 -0.02 3.93 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -60.54 13.29 21.45 0.28 -60.25 16 9 Si 0.96 46.51 29.54 68.60 2.03 48.53 16 10 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 13 S 1.54 53.91 12.94 -56.49 -0.73 53.17 16 14 O -0.96 -49.71 16.63 -148.98 -2.48 -52.18 16 15 C -0.45 -15.02 2.80 30.59 0.09 -14.94 16 16 C -0.08 -2.11 5.11 30.59 0.16 -1.95 16 17 C -0.12 -3.00 5.92 30.59 0.18 -2.82 16 18 C -0.11 -2.17 5.92 30.59 0.18 -1.99 16 19 C -0.12 -2.85 5.92 30.58 0.18 -2.67 16 20 C -0.09 -2.49 5.21 30.58 0.16 -2.33 16 21 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.02 0.61 8.05 -2.39 -0.02 0.59 16 24 H 0.05 1.70 8.11 -2.38 -0.02 1.68 16 25 H 0.12 2.11 7.99 -2.38 -0.02 2.10 16 26 H -0.01 -0.33 8.02 -2.39 -0.02 -0.35 16 27 H -0.02 -1.45 6.92 -2.39 -0.02 -1.47 16 28 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 29 H 0.04 1.87 7.85 -2.39 -0.02 1.85 16 30 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.06 1.68 6.26 -2.39 -0.01 1.67 16 32 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -86.68 320.75 2.33 -84.36 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 0.99 Total: 3.76 kcal Atomic # 6 Polarization: -43.87 SS G_CDS: 3.36 Total: -40.52 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -0.84 Total: -97.13 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -2.48 Total: -52.18 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Atomic # 16 Polarization: 53.91 SS G_CDS: -0.73 Total: 53.17 kcal Total: -86.68 2.33 -84.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385461709.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.656 kcal (2) G-P(sol) polarization free energy of solvation -86.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds