Wall clock time and date at job start Mon Mar 30 2020 07:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46873 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46783 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46772 * 180.02562 * 12 11 10 14 14 C 1.46898 * 111.00074 * 180.02562 * 13 12 11 15 15 H 1.09002 * 115.54891 * 350.66939 * 14 13 12 16 16 C 1.52998 * 117.50332 * 136.37625 * 14 13 12 17 17 C 1.52996 * 117.50080 * 205.00337 * 14 13 12 18 18 H 1.08997 * 117.49980 * 0.02562 * 17 14 13 19 19 C 1.50697 * 117.50160 * 145.02242 * 17 14 13 20 20 C 1.38227 * 120.00228 * 59.72225 * 19 17 14 21 21 C 1.38243 * 120.00136 * 179.81468 * 20 19 17 22 22 C 1.38240 * 119.99688 * 0.41484 * 21 20 19 23 23 C 1.38232 * 119.99783 * 359.81725 * 22 21 20 24 24 C 1.38237 * 120.00517 * 359.97438 * 23 22 21 25 25 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 27 27 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 28 28 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 29 29 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 30 30 H 1.08994 * 109.47272 * 300.00031 * 11 10 9 31 31 H 1.09003 * 109.46507 * 60.00134 * 11 10 9 32 32 H 1.08994 * 109.47548 * 300.00237 * 12 11 10 33 33 H 1.08997 * 109.47413 * 60.00544 * 12 11 10 34 34 H 1.00900 * 110.99838 * 303.95186 * 13 12 11 35 35 H 1.08995 * 117.50043 * 214.98220 * 16 14 13 36 36 H 1.09009 * 117.49427 * 0.02562 * 16 14 13 37 37 H 1.08000 * 120.00079 * 359.97438 * 20 19 17 38 38 H 1.07998 * 120.00254 * 180.21095 * 21 20 19 39 39 H 1.07994 * 120.00038 * 179.79079 * 22 21 20 40 40 H 1.08006 * 119.99736 * 179.97438 * 23 22 21 41 41 H 1.07994 * 120.00129 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0009 12 6 6.0616 -4.0790 0.0015 13 7 7.5306 -4.0789 0.0020 14 6 8.0571 -5.4503 0.0019 15 1 7.3196 -6.2370 0.1609 16 6 9.2278 -5.7576 -0.9340 17 6 9.4583 -5.6692 0.5760 18 1 9.9894 -4.7957 0.9542 19 6 9.7134 -6.9561 1.3174 20 6 9.5518 -8.1685 0.6734 21 6 9.7895 -9.3490 1.3524 22 6 10.1804 -9.3172 2.6780 23 6 10.3373 -8.1049 3.3234 24 6 10.1038 -6.9243 2.6431 25 1 -0.4850 0.8400 -0.0004 26 1 3.8753 -0.6803 -0.8889 27 1 3.8746 -0.6799 0.8911 28 1 3.6579 -3.1505 0.8908 29 1 3.6587 -3.1502 -0.8892 30 1 5.9150 -2.1226 -0.8890 31 1 5.9149 -2.1227 0.8910 32 1 5.6983 -4.5925 0.8916 33 1 5.6983 -4.5931 -0.8883 34 1 7.8925 -3.5530 -0.7793 35 1 9.2606 -6.7466 -1.3910 36 1 9.6077 -4.9420 -1.5494 37 1 9.2424 -8.1935 -0.3610 38 1 9.6666 -10.2961 0.8483 39 1 10.3628 -10.2394 3.2095 40 1 10.6424 -8.0800 4.3591 41 1 10.2260 -5.9772 3.1475 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385776307.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:48 Heat of formation + Delta-G solvation = 28.401872 kcal Electronic energy + Delta-G solvation = -17682.110027 eV Core-core repulsion = 14947.550048 eV Total energy + Delta-G solvation = -2734.559979 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.91615 -37.84759 -35.59473 -33.43918 -31.87868 -31.17826 -30.42367 -28.19195 -24.40791 -24.00567 -22.66501 -21.71246 -21.29114 -20.42076 -19.91918 -17.40811 -16.64903 -15.98829 -15.70229 -15.26216 -14.89084 -14.67251 -14.15960 -13.85413 -13.64133 -13.25568 -13.05037 -12.71276 -12.53183 -12.19406 -11.95234 -11.80477 -11.49867 -11.30252 -11.18766 -11.00505 -10.75964 -10.61268 -10.49872 -9.86465 -9.66556 -9.49027 -9.16504 -9.13546 -8.92829 -8.50582 -8.21984 -6.01261 -3.98829 1.08023 1.16061 3.33042 3.35580 3.40324 3.45115 3.81831 3.91451 4.48367 4.50250 4.60649 4.71449 4.76064 4.84694 4.88561 5.01944 5.23875 5.31449 5.34043 5.36305 5.41369 5.46383 5.58248 5.74629 5.80340 5.80997 5.88131 6.04935 6.13638 6.24484 6.27559 6.37227 6.42308 6.66936 6.76060 6.77207 6.90013 7.06159 7.27996 7.36273 7.49373 7.83869 8.57958 9.04058 9.61700 11.12352 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.039459 B = 0.002590 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.431637 B =10807.492934 C =10927.116194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.265 1.265 6 H -0.288 1.288 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.101 4.101 11 C -0.119 4.119 12 C 0.061 3.939 13 N -0.660 5.660 14 C 0.045 3.955 15 H 0.110 0.890 16 C -0.200 4.200 17 C -0.112 4.112 18 H 0.116 0.884 19 C -0.045 4.045 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.129 4.129 23 C -0.118 4.118 24 C -0.112 4.112 25 H 0.262 0.738 26 H 0.010 0.990 27 H 0.015 0.985 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.343 0.657 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.414 -16.726 1.639 28.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.190 1.190 6 H -0.214 1.214 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.139 4.139 11 C -0.157 4.157 12 C -0.068 4.068 13 N -0.290 5.290 14 C -0.066 4.066 15 H 0.128 0.872 16 C -0.238 4.238 17 C -0.131 4.131 18 H 0.134 0.866 19 C -0.045 4.045 20 C -0.142 4.142 21 C -0.136 4.136 22 C -0.147 4.147 23 C -0.136 4.136 24 C -0.130 4.130 25 H 0.072 0.928 26 H 0.028 0.972 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.162 0.838 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 23.273 -16.508 2.323 28.628 hybrid contribution 0.191 0.627 -0.891 1.106 sum 23.464 -15.881 1.432 28.369 Atomic orbital electron populations 1.69924 1.06313 1.26825 1.51439 1.25059 0.94749 0.99238 0.94648 0.86754 0.80397 0.83549 0.78443 1.20372 1.18951 1.21442 1.21191 0.89696 0.94400 1.50481 0.91130 1.19571 0.96958 0.92466 0.96153 1.21415 0.91681 0.99829 1.00993 1.21684 0.97634 0.94407 1.01977 1.22118 0.85390 0.98665 1.00592 1.60186 1.08943 1.10745 1.49112 1.22547 0.90238 0.92004 1.01840 0.87220 1.23636 1.04315 1.03417 0.92455 1.21328 1.01091 0.96400 0.94283 0.86587 1.19191 0.98256 0.93213 0.93851 1.21075 1.01002 0.92027 1.00097 1.21125 0.99639 0.98002 0.94834 1.21142 1.00622 0.97906 0.95051 1.21154 1.00042 0.92504 0.99878 1.21017 0.99654 0.98486 0.93875 0.92806 0.97211 0.96630 0.92759 0.93025 0.92686 0.91594 0.90917 0.95019 0.83798 0.88374 0.88229 0.86040 0.86175 0.86253 0.86066 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.43 13.96 55.43 0.77 -27.66 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.46 16 10 C -0.10 -2.00 5.15 -26.73 -0.14 -2.14 16 11 C -0.12 -1.90 5.47 -26.73 -0.15 -2.05 16 12 C 0.06 0.82 5.54 -3.82 -0.02 0.80 16 13 N -0.66 -7.85 6.78 -106.73 -0.72 -8.57 16 14 C 0.04 0.47 5.94 -67.72 -0.40 0.07 16 15 H 0.11 1.19 7.90 -51.93 -0.41 0.78 16 16 C -0.20 -1.70 9.56 -26.73 -0.26 -1.96 16 17 C -0.11 -1.08 5.97 -91.77 -0.55 -1.63 16 18 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 19 C -0.04 -0.44 5.61 -104.63 -0.59 -1.03 16 20 C -0.12 -1.13 9.29 -39.58 -0.37 -1.50 16 21 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 22 C -0.13 -1.06 10.05 -39.58 -0.40 -1.45 16 23 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 24 C -0.11 -1.07 9.74 -39.58 -0.39 -1.46 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 27 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.34 3.69 8.52 -39.29 -0.33 3.36 16 35 H 0.10 0.74 6.18 -51.93 -0.32 0.42 16 36 H 0.10 0.79 8.09 -51.92 -0.42 0.37 16 37 H 0.12 0.94 6.03 -52.49 -0.32 0.63 16 38 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -31.45 337.55 -10.93 -42.38 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.81 Total: 0.58 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -4.59 Total: -29.28 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.05 Total: -36.23 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.45 -10.93 -42.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385776307.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.781 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds