Wall clock time and date at job start Mon Mar 30 2020 07:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46873 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46783 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46772 * 180.02562 * 12 11 10 14 14 C 1.46898 * 111.00074 * 180.02562 * 13 12 11 15 15 H 1.09002 * 115.54891 * 350.66939 * 14 13 12 16 16 C 1.52998 * 117.50332 * 136.37625 * 14 13 12 17 17 C 1.52996 * 117.50080 * 205.00337 * 14 13 12 18 18 H 1.08997 * 117.49980 * 0.02562 * 17 14 13 19 19 C 1.50697 * 117.50160 * 145.02242 * 17 14 13 20 20 C 1.38227 * 120.00228 * 59.72225 * 19 17 14 21 21 C 1.38243 * 120.00136 * 179.81468 * 20 19 17 22 22 C 1.38240 * 119.99688 * 0.41484 * 21 20 19 23 23 C 1.38232 * 119.99783 * 359.81725 * 22 21 20 24 24 C 1.38237 * 120.00517 * 359.97438 * 23 22 21 25 25 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 27 27 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 28 28 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 29 29 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 30 30 H 1.08994 * 109.47272 * 300.00031 * 11 10 9 31 31 H 1.09003 * 109.46507 * 60.00134 * 11 10 9 32 32 H 1.08994 * 109.47548 * 300.00237 * 12 11 10 33 33 H 1.08997 * 109.47413 * 60.00544 * 12 11 10 34 34 H 1.00900 * 110.99838 * 303.95186 * 13 12 11 35 35 H 1.08995 * 117.50043 * 214.98220 * 16 14 13 36 36 H 1.09009 * 117.49427 * 0.02562 * 16 14 13 37 37 H 1.08000 * 120.00079 * 359.97438 * 20 19 17 38 38 H 1.07998 * 120.00254 * 180.21095 * 21 20 19 39 39 H 1.07994 * 120.00038 * 179.79079 * 22 21 20 40 40 H 1.08006 * 119.99736 * 179.97438 * 23 22 21 41 41 H 1.07994 * 120.00129 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0009 12 6 6.0616 -4.0790 0.0015 13 7 7.5306 -4.0789 0.0020 14 6 8.0571 -5.4503 0.0019 15 1 7.3196 -6.2370 0.1609 16 6 9.2278 -5.7576 -0.9340 17 6 9.4583 -5.6692 0.5760 18 1 9.9894 -4.7957 0.9542 19 6 9.7134 -6.9561 1.3174 20 6 9.5518 -8.1685 0.6734 21 6 9.7895 -9.3490 1.3524 22 6 10.1804 -9.3172 2.6780 23 6 10.3373 -8.1049 3.3234 24 6 10.1038 -6.9243 2.6431 25 1 -0.4850 0.8400 -0.0004 26 1 3.8753 -0.6803 -0.8889 27 1 3.8746 -0.6799 0.8911 28 1 3.6579 -3.1505 0.8908 29 1 3.6587 -3.1502 -0.8892 30 1 5.9150 -2.1226 -0.8890 31 1 5.9149 -2.1227 0.8910 32 1 5.6983 -4.5925 0.8916 33 1 5.6983 -4.5931 -0.8883 34 1 7.8925 -3.5530 -0.7793 35 1 9.2606 -6.7466 -1.3910 36 1 9.6077 -4.9420 -1.5494 37 1 9.2424 -8.1935 -0.3610 38 1 9.6666 -10.2961 0.8483 39 1 10.3628 -10.2394 3.2095 40 1 10.6424 -8.0800 4.3591 41 1 10.2260 -5.9772 3.1475 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385776307.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:47 Heat of formation + Delta-G solvation = 10.932451 kcal Electronic energy + Delta-G solvation = -17682.867558 eV Core-core repulsion = 14947.550048 eV Total energy + Delta-G solvation = -2735.317510 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.59229 -38.65344 -36.93005 -35.11661 -33.57473 -31.81584 -31.32191 -29.72529 -26.04089 -24.70138 -23.36053 -22.72744 -22.56392 -21.65537 -21.03399 -18.85590 -18.06385 -16.91079 -16.62514 -16.37298 -16.05657 -15.67446 -15.55794 -14.87252 -14.78272 -14.39460 -14.16581 -13.79202 -13.73393 -13.54660 -13.35039 -12.92672 -12.77709 -12.40096 -12.25918 -12.13840 -11.89585 -11.76935 -11.73237 -11.45373 -11.32719 -11.30405 -11.10022 -10.76211 -9.81145 -9.67180 -9.05047 -8.29637 -6.33815 0.42336 0.51360 1.35830 1.38294 1.50868 2.36736 2.66254 3.01389 3.05626 3.15015 3.78351 3.94232 4.02142 4.04774 4.14312 4.16903 4.23986 4.28400 4.34437 4.46269 4.60661 4.62719 4.69120 4.74352 4.81296 4.90274 4.92958 5.10358 5.15300 5.19209 5.19662 5.21462 5.26104 5.57457 5.60711 5.64481 5.65358 5.68510 5.74933 6.05876 6.13928 6.29275 6.42174 6.74570 7.30964 8.87365 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.039459 B = 0.002590 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.431637 B =10807.492934 C =10927.116194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.001 4.001 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.246 1.246 6 H -0.284 1.284 7 C -0.535 4.535 8 H 0.029 0.971 9 C -0.013 4.013 10 C -0.095 4.095 11 C -0.107 4.107 12 C 0.071 3.929 13 N -0.664 5.664 14 C 0.031 3.969 15 H 0.104 0.896 16 C -0.181 4.181 17 C -0.112 4.112 18 H 0.111 0.889 19 C -0.062 4.062 20 C -0.134 4.134 21 C -0.126 4.126 22 C -0.136 4.136 23 C -0.126 4.126 24 C -0.131 4.131 25 H 0.266 0.734 26 H 0.019 0.981 27 H 0.018 0.982 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.350 0.650 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.864 -16.724 1.299 30.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.170 1.170 6 H -0.210 1.210 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.050 4.050 10 C -0.133 4.133 11 C -0.145 4.145 12 C -0.058 4.058 13 N -0.295 5.295 14 C -0.080 4.080 15 H 0.121 0.879 16 C -0.220 4.220 17 C -0.131 4.131 18 H 0.129 0.871 19 C -0.062 4.062 20 C -0.152 4.152 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.144 4.144 24 C -0.149 4.149 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.170 0.830 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.150 0.850 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 25.746 -16.527 1.979 30.658 hybrid contribution -0.623 0.510 -0.762 1.109 sum 25.123 -16.017 1.217 29.819 Atomic orbital electron populations 1.70082 1.08366 1.28183 1.52818 1.26102 0.95693 1.03784 0.94119 0.85587 0.79449 0.77899 0.79280 1.18984 1.16970 1.20969 1.21575 0.92451 0.93027 1.50258 0.95246 1.19545 0.93588 0.95433 0.96437 1.21289 0.94663 0.96909 1.00483 1.21495 0.94358 0.96235 1.02366 1.21888 0.86626 0.96801 1.00500 1.60116 1.07693 1.11912 1.49732 1.22507 0.90597 0.91025 1.03823 0.87863 1.23699 1.02030 1.04359 0.91878 1.21297 1.00231 0.96313 0.95283 0.87092 1.19332 0.99054 0.93603 0.94199 1.21280 1.01094 0.92066 1.00766 1.21445 0.99104 0.98665 0.95122 1.21475 0.99980 0.98643 0.95250 1.21432 0.99781 0.92418 1.00793 1.21212 1.00327 0.99152 0.94165 0.92510 0.96256 0.96375 0.93622 0.93363 0.91568 0.91857 0.91667 0.94583 0.83013 0.87192 0.87236 0.84993 0.84217 0.84180 0.84414 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.16 13.96 21.45 0.30 -60.86 16 2 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 3 Si 0.95 45.13 27.47 68.60 1.88 47.01 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 6 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.54 -31.81 9.66 25.60 0.25 -31.57 16 8 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 9 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 10 C -0.10 -3.73 5.15 30.60 0.16 -3.57 16 11 C -0.11 -3.22 5.47 30.60 0.17 -3.05 16 12 C 0.07 1.81 5.54 86.30 0.48 2.29 16 13 N -0.66 -14.70 6.78 -491.58 -3.33 -18.03 16 14 C 0.03 0.61 5.94 44.91 0.27 0.88 16 15 H 0.10 2.15 7.90 -2.39 -0.02 2.13 16 16 C -0.18 -2.73 9.56 30.59 0.29 -2.43 16 17 C -0.11 -2.05 5.97 -11.54 -0.07 -2.12 16 18 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 19 C -0.06 -1.17 5.61 -19.87 -0.11 -1.28 16 20 C -0.13 -2.26 9.29 22.27 0.21 -2.05 16 21 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 22 C -0.14 -1.99 10.05 22.27 0.22 -1.76 16 23 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 24 C -0.13 -2.42 9.74 22.27 0.22 -2.20 16 25 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 26 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 27 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 28 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.35 6.77 8.52 -89.69 -0.76 6.00 16 35 H 0.11 1.40 6.18 -2.39 -0.01 1.38 16 36 H 0.11 1.44 8.09 -2.38 -0.02 1.43 16 37 H 0.13 1.82 6.03 -2.91 -0.02 1.80 16 38 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -68.13 337.55 2.13 -66.00 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.17 Total: 16.27 kcal Atomic # 6 Polarization: -53.50 SS G_CDS: 3.11 Total: -50.39 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -3.03 Total: -78.89 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Total: -68.13 2.13 -66.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385776307.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.933 kcal (2) G-P(sol) polarization free energy of solvation -68.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds