Wall clock time and date at job start Mon Mar 30 2020 07:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00304 * 2 1 4 4 H 1.48496 * 109.47524 * 240.00076 * 3 2 1 5 5 H 1.48506 * 109.46883 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47277 * 119.99742 * 3 2 1 7 7 C 1.37878 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00337 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00275 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46911 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47084 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47032 * 180.02562 * 12 11 10 14 14 C 1.46905 * 110.99648 * 180.02562 * 13 12 11 15 15 H 1.09002 * 115.55023 * 350.58122 * 14 13 12 16 16 C 1.53002 * 117.49993 * 136.25433 * 14 13 12 17 17 C 1.53000 * 117.49884 * 204.91153 * 14 13 12 18 18 H 1.08999 * 117.49959 * 144.99278 * 17 14 13 19 19 C 1.50701 * 117.49727 * 359.97438 * 17 14 13 20 20 C 1.38237 * 120.00429 * 299.72921 * 19 17 14 21 21 C 1.38230 * 119.99963 * 179.76242 * 20 19 17 22 22 C 1.38237 * 120.00561 * 0.48588 * 21 20 19 23 23 C 1.38233 * 119.99508 * 359.78922 * 22 21 20 24 24 C 1.38234 * 120.00190 * 359.95515 * 23 22 21 25 25 H 0.97002 * 119.99679 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46775 * 59.99547 * 9 7 2 27 27 H 1.08998 * 109.46905 * 300.00102 * 9 7 2 28 28 H 1.09003 * 109.46668 * 60.00045 * 10 9 7 29 29 H 1.08998 * 109.47631 * 300.00175 * 10 9 7 30 30 H 1.09003 * 109.47191 * 60.00643 * 11 10 9 31 31 H 1.08998 * 109.47755 * 300.00284 * 11 10 9 32 32 H 1.09003 * 109.46602 * 60.00257 * 12 11 10 33 33 H 1.08998 * 109.47036 * 300.00699 * 12 11 10 34 34 H 1.00900 * 110.99930 * 303.94917 * 13 12 11 35 35 H 1.09000 * 117.49996 * 215.00488 * 16 14 13 36 36 H 1.08999 * 117.49664 * 0.02562 * 16 14 13 37 37 H 1.08002 * 119.99497 * 359.97438 * 20 19 17 38 38 H 1.08001 * 119.99847 * 180.24905 * 21 20 19 39 39 H 1.08001 * 120.00374 * 179.76526 * 22 21 20 40 40 H 1.07996 * 120.00091 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.00409 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4744 -6.1501 0.0018 13 7 1.7399 -7.4222 0.0018 14 6 2.6644 -8.5639 0.0031 15 1 3.7144 -8.3187 -0.1572 16 6 2.3464 -9.7295 0.9417 17 6 2.1529 -9.8878 -0.5684 18 1 2.8663 -10.5136 -1.1046 19 6 0.7390 -9.9209 -1.0889 20 6 -0.3163 -9.6392 -0.2416 21 6 -1.6128 -9.6648 -0.7203 22 6 -1.8549 -9.9820 -2.0439 23 6 -0.8000 -10.2693 -2.8898 24 6 0.4969 -10.2385 -2.4124 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6043 0.8906 29 1 2.8719 -3.6044 -0.8894 30 1 0.8533 -5.0451 -0.8886 31 1 0.8538 -5.0446 0.8913 32 1 3.1010 -6.0918 0.8919 33 1 3.1012 -6.0927 -0.8881 34 1 1.1032 -7.4721 0.7830 35 1 3.1871 -10.2512 1.3991 36 1 1.4509 -9.6494 1.5580 37 1 -0.1275 -9.3957 0.7935 38 1 -2.4370 -9.4407 -0.0593 39 1 -2.8682 -10.0057 -2.4169 40 1 -0.9891 -10.5175 -3.9237 41 1 1.3212 -10.4626 -3.0733 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385776321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:50 Heat of formation + Delta-G solvation = 27.315590 kcal Electronic energy + Delta-G solvation = -18122.104213 eV Core-core repulsion = 15387.497129 eV Total energy + Delta-G solvation = -2734.607084 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.80121 -37.64752 -35.42702 -33.32233 -31.62861 -30.91931 -30.30090 -27.78433 -24.34749 -23.86061 -22.66359 -21.53129 -21.40862 -20.27459 -19.77536 -17.05285 -16.23520 -15.97037 -15.63194 -15.07410 -14.70043 -14.46313 -14.38002 -13.63278 -13.47115 -13.11407 -12.99074 -12.66955 -12.32758 -12.02653 -11.68048 -11.57014 -11.16300 -11.09677 -11.02818 -10.90052 -10.60325 -10.49245 -10.40898 -10.38668 -9.60461 -9.23950 -8.99670 -8.89739 -8.64568 -8.30435 -8.10356 -5.95529 -3.97833 1.36020 1.42677 3.35552 3.39673 3.42253 3.50958 3.99006 4.03298 4.49394 4.52281 4.72180 4.85584 4.96566 4.99479 5.09779 5.13906 5.39688 5.41644 5.44884 5.50418 5.52206 5.58955 5.63405 5.86581 5.91952 6.02063 6.03877 6.18021 6.28449 6.48148 6.52285 6.53101 6.64248 6.84865 6.98362 7.01244 7.07390 7.25123 7.37736 7.73169 7.89504 8.05590 8.48274 9.09468 9.65811 11.15807 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026828 B = 0.003168 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.442348 B = 8837.020004 C = 9467.843824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.115 4.115 12 C 0.061 3.939 13 N -0.654 5.654 14 C 0.043 3.957 15 H 0.112 0.888 16 C -0.203 4.203 17 C -0.115 4.115 18 H 0.111 0.889 19 C -0.026 4.026 20 C -0.109 4.109 21 C -0.116 4.116 22 C -0.130 4.130 23 C -0.119 4.119 24 C -0.117 4.117 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.014 0.986 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.341 0.659 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.307 -23.561 -0.914 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.153 4.153 12 C -0.067 4.067 13 N -0.283 5.283 14 C -0.068 4.068 15 H 0.130 0.870 16 C -0.241 4.241 17 C -0.134 4.134 18 H 0.129 0.871 19 C -0.027 4.027 20 C -0.127 4.127 21 C -0.134 4.134 22 C -0.148 4.148 23 C -0.137 4.137 24 C -0.135 4.135 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.161 0.839 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.062 -23.408 -1.595 23.486 hybrid contribution 0.718 0.996 0.857 1.497 sum 1.779 -22.412 -0.738 22.495 Atomic orbital electron populations 1.69959 1.06045 1.26614 1.50931 1.25032 0.94847 0.99210 0.95424 0.86670 0.79589 0.83223 0.78578 1.20252 1.21297 1.20298 1.21257 0.92973 0.91241 1.50465 0.92834 1.19086 0.94026 0.91324 0.97150 1.21582 0.99074 0.93920 1.00064 1.21634 0.97880 0.93830 1.02001 1.22129 0.96255 0.88095 1.00215 1.60190 1.18226 1.00783 1.49092 1.22521 0.96164 0.86304 1.01816 0.87014 1.23628 1.03661 1.04282 0.92542 1.21397 0.95041 1.01489 0.95494 0.87144 1.18906 0.92822 0.97486 0.93452 1.20898 0.92292 1.00052 0.99461 1.21090 0.96727 0.99775 0.95818 1.21083 0.98880 1.00791 0.94058 1.21062 0.92796 1.00393 0.99443 1.20878 0.96716 1.01025 0.94907 0.93000 0.96616 0.96748 0.93680 0.93432 0.91638 0.92798 0.95311 0.91125 0.83938 0.88435 0.88294 0.86621 0.86348 0.86481 0.86423 0.86508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C -0.12 -2.01 5.47 -26.73 -0.15 -2.16 16 12 C 0.06 0.87 5.54 -3.82 -0.02 0.85 16 13 N -0.65 -8.28 5.65 -106.72 -0.60 -8.88 16 14 C 0.04 0.46 6.26 -67.71 -0.42 0.03 16 15 H 0.11 1.11 7.90 -51.93 -0.41 0.70 16 16 C -0.20 -1.78 9.56 -26.69 -0.26 -2.03 16 17 C -0.11 -1.14 6.05 -91.74 -0.55 -1.69 16 18 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 19 C -0.03 -0.30 5.24 -104.62 -0.55 -0.85 16 20 C -0.11 -1.22 8.44 -39.58 -0.33 -1.55 16 21 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 22 C -0.13 -1.38 10.05 -39.58 -0.40 -1.77 16 23 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 24 C -0.12 -1.29 9.74 -39.58 -0.39 -1.68 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.34 4.11 7.87 -39.29 -0.31 3.80 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.85 6.11 -51.93 -0.32 0.53 16 37 H 0.12 1.15 5.65 -52.49 -0.30 0.85 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -31.30 338.16 -11.13 -42.44 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.79 Total: 1.20 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: -4.55 Total: -30.06 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.13 Total: -35.67 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.30 -11.13 -42.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385776321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.751 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds